PROSITE entry PS00261
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General information about the entry
| Entry name [info] | GLYCO_HORMONE_BETA_1 |
| Accession [info] | PS00261 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00234 |
Name and characterization of the entry
| Description [info] | Glycoprotein hormones beta chain signature 1. |
| Pattern [info] |
C-[STAGM]-G-[HFYL]-C-x-[ST]. |
Numerical results [info]
| Total number of hits | 133 in 129 different sequences |
| Number of true positive hits | 105 in 105 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 28 in 24 different sequences |
| Number of false negative sequences | 7 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 78.95 % |
| Recall (true positives / (true positives + false negatives)) | 93.75 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Site [info] | disulfide at position 1 |
| Site [info] | disulfide at position 5 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
105 sequences
CGB1_HUMAN (A6NKQ9), CGB2_HUMAN (Q6NT52), CGB3_HUMAN (P0DN86), CGB7_HUMAN (P0DN87), CGHB_AOTNA (Q3HRV3), CGHB_CALJA (P51500), CGHB_PAPAN (P07434), CGHB_SAIBB (Q3S2X5), FSHB_AILME (Q8WN19), FSHB_AOTNA (Q3HRV4), FSHB_AQUCT (Q9PS36), FSHB_BOVIN (P04837), FSHB_BUBBU (Q6SV86), FSHB_CAPHI (Q8HY83), FSHB_CAVPO (Q9JK69), FSHB_CERNI (Q8HY84), FSHB_GORGO (A1BN60), FSHB_HORSE (P01226), FSHB_HUMAN (P01225), FSHB_MACFA (Q6EV79), FSHB_MASCO (Q6SI68), FSHB_MERUN (Q6U830), FSHB_MONDO (Q95J82), FSHB_MOUSE (Q60687), FSHB_PANTA (Q9BDJ0), FSHB_PANTR (Q2PUH2), FSHB_PHOSU (Q9QYB0), FSHB_PIG(P01228), FSHB_PONPY (A1BN61), FSHB_RABIT (Q6IY73), FSHB_SAIBB (Q3YC02), FSHB_SHEEP (P01227), FSHB_STRCA (P80663), FSHB_TRIVU (O46430), GTHB1_ANGJA (Q9YGK3), GTHB1_CARAU (Q98848), GTHB1_CORAU (P48250), GTHB1_CYPCA (O13050), GTHB1_ICTPU (Q9DG81), GTHB1_ONCKE (P10257), GTHB1_ONCMA (P48252), GTHB2_ACALA (Q90225), GTHB2_ANGAN (P27767), GTHB2_CARAU (Q98849), GTHB2_CLAGA (P53543), GTHB2_CLUPA (Q9YGH2), GTHB2_CORAU (P48251), GTHB2_CTEID (P30984), GTHB2_CYPCA (P01235), GTHB2_FUNHE (P30972), GTHB2_HYPMO (P37038), GTHB2_ICTPU (Q9DG80), GTHB2_MORSA (Q91121), GTHB2_ONCKE (P10256), GTHB2_ONCMA (P48253), GTHB2_ONCTS (P07732), GTHB2_THUOB (P37206), GTHB2_TRITC (Q9PW98), GTHB_MURCI (P12837), LSHB_AILFU (Q8HZR9), LSHB_AILME (Q8WN18), LSHB_AQUCT (P80071), LSHB_BALAC (P33088), LSHB_BOVIN (P04651), LSHB_CANLF (P18842), LSHB_CERSI (O77835), LSHB_COTJA (P45657), LSHB_EQUAS (P19794), LSHB_EQUQB (O46641), LSHB_FELCA (O77805), LSHB_GORGO (Q2Q1P1), LSHB_HORSE (P08751), LSHB_HUMAN (P01229), LSHB_MACFA (Q6EV78), LSHB_MELGA (P45646), LSHB_MONDO (Q95J85), LSHB_MOUSE (O09108), LSHB_OSPRU (O46483), LSHB_PANTA (Q9BDI9), LSHB_PANTR (Q2Q1P2), LSHB_PHOSU (Q9QYA9), LSHB_PHYMC (P25330), LSHB_PIG(P01232), LSHB_PONPY (Q2Q1P0), LSHB_RABIT (Q6IY74), LSHB_RAT(P01230), LSHB_SHEEP (P01231), LSHB_STRCA (P80664), LSHB_TRIVU (O46482), TSHB_ANGAN (Q08127), TSHB_ANGJA (Q7ZZV4), TSHB_BOVIN (P01223), TSHB_CANLF (P54828), TSHB_CHICK (O57340), TSHB_FELCA (Q52R90), TSHB_HORSE (Q28376), TSHB_HUMAN (P01222), TSHB_LAMGL (P79357), TSHB_MONDO (Q95J88), TSHB_MOUSE (P12656), TSHB_ONCMY (P37240), TSHB_PHOSU (Q62590), TSHB_PIG(P01224), TSHB_RAT(P04652), TSHB_SALSA (O73824)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
7 sequences
FSHB_RAT(P18427), GPHB5_HUMAN (Q86YW7), GPHB5_MOUSE (Q812B2), GTHB1_FUNHE (P30971), GTHB1_MORSA (Q91120), GTHB1_THUOB (P37205), GTHB1_TRITC (Q9PW99)» more |
| UniProtKB/Swiss-Prot False positive sequences |
24 sequences
005L_IIV3 (Q197F5), BRAT1_DANRE (Q1RLU1), CDNF_MOUSE (Q8CC36), CE034_MOUSE (Q3UJC8), CNT3B_HUMAN (Q96NU0), CNTP2_HUMAN (Q9UHC6), CNTP2_MOUSE (Q9CPW0), CNTP2_PONAB (Q5RD64), CNTP3_HUMAN (Q9BZ76), CP089_HUMAN (Q6UX73), CTP5B_MOUSE (Q0V8T8), DPOL_HBVGO (Q9YPV8), FABH_CUTAC (P0DW99), ORC3_ORYSJ (Q0IY07), PID4_CAEEL (O44749), SSPO_BOVIN (P98167), SSPO_HUMAN (A2VEC9), SSPO_MOUSE (Q8CG65), SSPO_RAT(Q700K0), TBWKD_DROME (Q9VGL8), THIM_GRABC (Q0BVF4), VF337_IIV6 (Q91FI7), ZMYM4_HUMAN (Q5VZL5), ZMYM4_MOUSE (A2A791)» more |
| PDB [Detailed view] |
15 PDB
1FL7; 1HCN; 1HRP; 1QFW; 1XWD; 4AY9; 4MQW; 6P57; 7FIG; 7FIH; 7FII; 7T9I; 7UTZ; 7XW5; 8I2G » more |