Entry: PS00261

General information about the entry

Entry name [info] GLYCO_HORMONE_BETA_1
Accession [info] PS00261
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-NOV-1995 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00234

Name and characterization of the entry

Description [info] Glycoprotein hormones beta chain signature 1.
Pattern [info] 
C-[STAGM]-G-[HFYL]-C-x-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 129 in 125 different sequences
Number of true positive hits 105 in 105 different sequences
Number of 'unknown' hits 0
Number of false positive hits 24 in 20 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 81.40 %
Recall (true positives / (true positives + false negatives)) 93.75 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] disulfide at position 1
Site [info] disulfide at position 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 105 sequences 

CGB1_HUMAN  (A6NKQ9    ), CGB2_HUMAN  (Q6NT52    ), CGB3_HUMAN  (P0DN86    ), 

CGB7_HUMAN  (P0DN87    ), CGHB_AOTNA  (Q3HRV3    ), CGHB_CALJA  (P51500    ), 
CGHB_PAPAN  (P07434    ), CGHB_SAIBB  (Q3S2X5    ), FSHB_AILME  (Q8WN19    ), 
FSHB_AOTNA  (Q3HRV4    ), FSHB_BOVIN  (P04837    ), FSHB_BUBBU  (Q6SV86    ), 
FSHB_CAPHI  (Q8HY83    ), FSHB_CAVPO  (Q9JK69    ), FSHB_CERNI  (Q8HY84    ), 
FSHB_GORGO  (A1BN60    ), FSHB_HORSE  (P01226    ), FSHB_HUMAN  (P01225    ), 
FSHB_LITCT  (Q9PS36    ), FSHB_MACFA  (Q6EV79    ), FSHB_MASCO  (Q6SI68    ), 
FSHB_MERUN  (Q6U830    ), FSHB_MONDO  (Q95J82    ), FSHB_MOUSE  (Q60687    ), 
FSHB_PANTA  (Q9BDJ0    ), FSHB_PANTR  (Q2PUH2    ), FSHB_PHOSU  (Q9QYB0    ), 
FSHB_PIG    (P01228    ), FSHB_PONPY  (A1BN61    ), FSHB_RABIT  (Q6IY73    ), 
FSHB_SAIBB  (Q3YC02    ), FSHB_SHEEP  (P01227    ), FSHB_STRCA  (P80663    ), 
FSHB_TRIVU  (O46430    ), GTHB1_ANGJA (Q9YGK3    ), GTHB1_CARAU (Q98848    ), 
GTHB1_CORAU (P48250    ), GTHB1_CYPCA (O13050    ), GTHB1_ICTPU (Q9DG81    ), 
GTHB1_ONCKE (P10257    ), GTHB1_ONCMA (P48252    ), GTHB2_ACALA (Q90225    ), 
GTHB2_ANGAN (P27767    ), GTHB2_CARAU (Q98849    ), GTHB2_CLAGA (P53543    ), 
GTHB2_CLUPA (Q9YGH2    ), GTHB2_CORAU (P48251    ), GTHB2_CTEID (P30984    ), 
GTHB2_CYPCA (P01235    ), GTHB2_FUNHE (P30972    ), GTHB2_HYPMO (P37038    ), 
GTHB2_ICTPU (Q9DG80    ), GTHB2_MORSA (Q91121    ), GTHB2_ONCKE (P10256    ), 
GTHB2_ONCMA (P48253    ), GTHB2_ONCTS (P07732    ), GTHB2_THUOB (P37206    ), 
GTHB2_TRITC (Q9PW98    ), GTHB_MURCI  (P12837    ), LSHB_AILFU  (Q8HZR9    ), 
LSHB_AILME  (Q8WN18    ), LSHB_BALAC  (P33088    ), LSHB_BOVIN  (P04651    ), 
LSHB_CANLF  (P18842    ), LSHB_CERSI  (O77835    ), LSHB_COTJA  (P45657    ), 
LSHB_EQUAS  (P19794    ), LSHB_EQUBU  (O46641    ), LSHB_FELCA  (O77805    ), 
LSHB_GORGO  (Q2Q1P1    ), LSHB_HORSE  (P08751    ), LSHB_HUMAN  (P01229    ), 
LSHB_LITCT  (P80071    ), LSHB_MACFA  (Q6EV78    ), LSHB_MACRU  (O46483    ), 
LSHB_MELGA  (P45646    ), LSHB_MONDO  (Q95J85    ), LSHB_MOUSE  (O09108    ), 
LSHB_PANTA  (Q9BDI9    ), LSHB_PANTR  (Q2Q1P2    ), LSHB_PHOSU  (Q9QYA9    ), 
LSHB_PHYCD  (P25330    ), LSHB_PIG    (P01232    ), LSHB_PONPY  (Q2Q1P0    ), 
LSHB_RABIT  (Q6IY74    ), LSHB_RAT    (P01230    ), LSHB_SHEEP  (P01231    ), 
LSHB_STRCA  (P80664    ), LSHB_TRIVU  (O46482    ), TSHB_ANGAN  (Q08127    ), 
TSHB_ANGJA  (Q7ZZV4    ), TSHB_BOVIN  (P01223    ), TSHB_CANLF  (P54828    ), 
TSHB_CHICK  (O57340    ), TSHB_FELCA  (Q52R90    ), TSHB_HORSE  (Q28376    ), 
TSHB_HUMAN  (P01222    ), TSHB_LAMGL  (P79357    ), TSHB_MONDO  (Q95J88    ), 
TSHB_MOUSE  (P12656    ), TSHB_ONCMY  (P37240    ), TSHB_PHOSU  (Q62590    ), 
TSHB_PIG    (P01224    ), TSHB_RAT    (P04652    ), TSHB_SALSA  (O73824    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

FSHB_RAT    (P18427    ), GPHB5_HUMAN (Q86YW7    ), GPHB5_MOUSE (Q812B2    ), 

GTHB1_FUNHE (P30971    ), GTHB1_MORSA (Q91120    ), GTHB1_THUOB (P37205    ), 
GTHB1_TRITC (Q9PW99    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 20 sequences 

005L_IIV3   (Q197F5    ), BRAT1_DANRE (Q1RLU1    ), CDNF_MOUSE  (Q8CC36    ), 

CE034_MOUSE (Q3UJC8    ), CNT3B_HUMAN (Q96NU0    ), CNTP2_HUMAN (Q9UHC6    ), 
CNTP2_MOUSE (Q9CPW0    ), CNTP2_PONAB (Q5RD64    ), CNTP3_HUMAN (Q9BZ76    ), 
CP089_HUMAN (Q6UX73    ), CTP5B_MOUSE (Q0V8T8    ), DPOL_HBVGO  (Q9YPV8    ), 
SSPO_BOVIN  (P98167    ), SSPO_HUMAN  (A2VEC9    ), SSPO_MOUSE  (Q8CG65    ), 
SSPO_RAT    (Q700K0    ), THIM_GRABC  (Q0BVF4    ), VF337_IIV6  (Q91FI7    ), 
ZMYM4_HUMAN (Q5VZL5    ), ZMYM4_MOUSE (A2A791    )
» more

PDB
[Detailed view]		 7 PDB

1FL7; 1HCN; 1HRP; 1QFW; 1XWD; 4AY9; 4MQW

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