Entry: PS00271

General information about the entry
Entry name THIONIN
Accession number PS00271
Entry type PATTERN
Date APR-1990 (CREATED); APR-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00244
Name and characterization of the entry
DescriptionPlant thionins signature.
Pattern C-C-x(5)-R-x(2)-[FY]-x(2)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 27 hits in 27 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 27 hits in 27 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 96.43 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 2,disulfide
  • `Interesting' site in the pattern: 8,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CRAM_CRAAB  (P01542), THN1_VISAL  (P01537), THN1_WHEAT  (P01544), 
THN21_ARATH (Q42596), THN22_ARATH (Q42597), THN23_ARATH (Q8VZK8), 
THN24_ARATH (Q9C8D6), THN2_VISAL  (P32880), THN2_WHEAT  (P32032), 
THN3_HORVU  (P08772), THN3_VISAL  (P01538), THN5_HORVU  (P09617), 
THN6_HORVU  (P09618), THN7_HORVU  (Q42838), THNA_HORVU  (P01545), 
THNA_PHOLI  (P01540), THNB_HORVU  (P21742), THNB_PHOLI  (P59358), 
THNB_VISAL  (P08943), THNB_WHEAT  (P01543), THNC_VISAL  (P83554), 
THND_HELPU  (P60057), THNX_HORVU  (Q8H0Q5), THN_BRARP   (Q9SBK8), 
THN_DENCL   (P01541), THN_PHOTO   (P01539), THN_PYRPU   (P07504)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
THN5_WHEAT  (Q05806)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1AB1; 1BHP; 1CBN; 1CCM; 1CCN; 1CNR; 1CRN; 1CXR; 1ED0; 1EJG; 1JMN; 1JMP; 1JXT; 1JXU; 1JXW; 1JXX; 1JXY; 1NBL; 1OKH; 1ORL; 1WUW; 1YV8; 1YVA; 2EYA; 2EYB; 2EYC; 2EYD; 2FD7; 2FD9; 2PLH; 2V9B; 3C8P; 3NIR; 3SZS; 3U7T; 4FC1;

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