Entry: PS00276

General information about the entry
Entry name CHANNEL_COLICIN
Accession number PS00276
Entry type PATTERN
Date APR-1990 (CREATED); APR-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00249
Name and characterization of the entry
DescriptionChannel forming colicins signature.
Pattern T-x(2)-W-x-P-[LIVMFY](3)-x(2)-E.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 16 hits in 16 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 11 hits in 11 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 5 hits in 5 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 68.75 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CE05_ECOLX  (Q47500), CE10_ECOLX  (Q47125), CEA1_ECOLX  (P02978), 
CEA1_SHISO  (P21178), CEAB_ECOLX  (P05819), CEAK_ECOLX  (Q47502), 
CEAN_ECOLX  (P08083), CEA_CITFR   (P04480), CEA_ECOLX   (Q47108), 
CEIA_ECOLX  (P06716), CEIB_ECOLX  (P04479)
False positive hits (sequences which do not belong to the set under consideration):
DSC1_SCHPO  (O43085), PK1L2_HUMAN (Q7Z442), PK1L2_MOUSE (Q7TN88), 
SRE31_CAEEL (O62266), SRE32_CAEEL (P90837)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A87; 1CII; 1COL; 1RH1; 2I88;

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