Entry: PS00306

General information about the entry
Entry name CASEIN_ALPHA_BETA
Accession number PS00306
Entry type PATTERN
Date APR-1990 (CREATED); NOV-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00277
Name and characterization of the entry
DescriptionCaseins alpha/beta signature.
Pattern C-L-[LV]-A-x-A-[LVF]-A.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 40 hits in 40 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 32 hits in 32 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 8 hits in 8 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 80.00 %
  • Recall (true hits / (true hits + false negatives)): 82.05 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CASA1_BOVIN (P02662), CASA1_BUBBU (O62823), CASA1_CAMDR (O97943), 
CASA1_CAPHI (P18626), CASA1_CAVPO (P04656), CASA1_HUMAN (P47710), 
CASA1_MOUSE (P19228), CASA1_RABIT (P09115), CASA1_RAT   (P02661), 
CASA1_SHEEP (P04653), CASA2_BOVIN (P02663), CASA2_CAPHI (P33049), 
CASA2_CAVPO (P04655), CASA2_EQUAS (B7VGF9), CASA2_PIG   (P39036), 
CASA2_RABIT (P50419), CASA2_SHEEP (P04654), CASB_BOVIN  (P02666), 
CASB_BUBBU  (Q9TSI0), CASB_HORSE  (Q9GKK3), CASB_HUMAN  (P05814), 
CASB_MOUSE  (P10598), CASB_RABIT  (P09116), CASB_RAT    (P02665), 
CASB_SHEEP  (P11839), CS2LA_RABIT (P50418), CS2LA_RAT   (P02667), 
CS2LB_MOUSE (P02664), CS2LB_RAT   (Q8CGR3), SERA_MACFA  (Q60HD7), 
SERA_PANTR  (A5A6P1), SERA_PONAB  (Q5R7M2)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CASA1_MACEU (P28549), CASA1_PIG   (P39035), CASA2_CAMDR (O97944), 
CASB_CAMDR  (Q9TVD0), CASB_CAPHI  (P33048), CASB_MACEU  (P28550), 
CASB_PIG    (P39037)
False positive hits (sequences which do not belong to the set under consideration):
CRCB1_THEFY (Q47KG0), FAAH1_PIG   (Q9TUI8), LCP2A_DROME (Q7JZV0), 
MMLH_CUPPJ  (O51798), SERA_HUMAN  (O43175), SERPH_BOVIN (Q2KJH6), 
SERPH_MOUSE (P19324), SERPH_RAT   (P29457)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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