Entry: PS00308

General information about the entry
Entry name LECTIN_LEGUME_ALPHA
Accession number PS00308
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00278
Name and characterization of the entry
DescriptionLegume lectins alpha-chain signature.
Pattern [LIV]-{LA}-[EDQ]-[FYWKR]-V-{VF}-[LIVF]-G-[LF]-[ST].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 95 hits in 95 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 78 hits in 78 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 17 hits in 17 different sequences
  • Number of known missed hits: 10
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 8
  • Precision (true hits / (true hits + false positives)): 82.11 %
  • Recall (true hits / (true hits + false negatives)): 88.64 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AR5A_PHAVU  (Q42460), AR5B_PHAVU  (Q41116), ARC1_PHAVU  (P19329), 
ARC2_PHAVU  (P19330), ARC4_PHAVU  (Q43629), CONA_CANBR  (P55915), 
CONA_CANCT  (P81461), CONA_CANEN  (P02866), CONA_CANGL  (P14894), 
CONA_CANLI  (P81460), CONA_CANRO  (P81364), LCB1_ROBPS  (Q41159), 
LCB2_ROBPS  (Q42372), LCB3_ROBPS  (Q41160), LCS1_ROBPS  (Q41162), 
LCS2_ROBPS  (Q41161), LEA1_PHAVU  (P02873), LEA2_PHAVU  (Q41114), 
LEC1_CLAKE  (Q39528), LEC1_CRAMO  (P83721), LEC1_CYTSE  (P22970), 
LEC1_DOLBI  (P05045), LEC1_LABAL  (P23558), LEC1_LATOC  (P12306), 
LEC1_MEDTR  (Q01806), LEC1_ULEEU  (P22972), LEC2_CLAKE  (Q39529), 
LEC2_CYTSC  (P29257), LEC2_CYTSE  (P22971), LEC2_LATOC  (P12307), 
LEC2_MEDTR  (Q01807), LEC2_ULEEU  (P22973), LEC4_GRISI  (P24146), 
LEC5_DOLBI  (P19588), LECA2_LABPU (B3EWQ9), LECA_CRAFL  (P81517), 
LECA_CYMRO  (P86184), LECA_DIOGR  (P08902), LECA_DIOGU  (P81637), 
LECA_DIORO  (P58908), LECA_DIOSC  (B3EWJ2), LECA_DIOVI  (P58907), 
LECA_DIOWI  (P86624), LECA_LABPU  (P38662), LECA_LATAP  (P07441), 
LECA_LATCI  (P07440), LECA_LATCY  (P07442), LECA_LATHI  (P07443), 
LECA_LATOD  (P02869), LECA_LATSA  (P12308), LECA_LATTI  (P07444), 
LECA_SPAPA  (P86352), LECA_VICCR  (P02868), LECA_VICSA  (P16350), 
LECB_SPAPA  (P86353), LECB_STYJP  (P93538), LECG_ARAHY  (P02872), 
LECR_CLAKE  (Q39527), LECS_STYJP  (P93535), LECS_VATMA  (P81371), 
LEC_BAUPU   (P16030), LEC_ERYCG   (P83410), LEC_ERYCO   (P16404), 
LEC_LATSP   (P16349), LEC_LENCC   (Q93WH6), LEC_LENCO   (Q93X49), 
LEC_LENCT   (Q8VXF2), LEC_LENCU   (P02870), LEC_LOTTE   (P19664), 
LEC_ONOVI   (P02874), LEC_PEA     (P02867), LEC_PHALU   (P16300), 
LEC_SOYBN   (P05046), LEC_VICFA   (P02871), LEC_VICVI   (P56625), 
PHAE_PHAVU  (P05088), PHAL_PHAVU  (P05087), PHAM_PHAVU  (P15231)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LEC1_PSOTE  (O24313), LEC2_CYMRO  (P86795), LECC1_ARAHY (Q70DJ5), 
LECN_PEA    (P16270), LECR_PEA    (Q40987), LEC_ACAFA   (P84849), 
LEC_LEUMI   (P42088), LRK62_ARATH (Q9M021), LRK63_ARATH (Q9M020), 
LRK64_ARATH (Q66GN2)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
LEAH_PHAVU  (P81870), LEC3_ULEEU  (P23032), LEC_CROJU   (P16352), 
LEC_CROPI   (P16351), LEC_MACAX   (P02875), LG29_VIGUS  (P83955), 
LG31_VIGUS  (P83956), PVAP_PHAVU  (P84869)
False positive hits (sequences which do not belong to the set under consideration):
O4A16_HUMAN (Q8NH70), O4A47_HUMAN (Q6IF82), OL470_MOUSE (Q8VF65), 
OL478_MOUSE (Q8VG04), OLF3_CANFA  (Q95156), OR4A4_HUMAN (Q8NGN8), 
OR4A5_HUMAN (Q8NH83), OR4A8_HUMAN (P0C604), OR4CF_HUMAN (Q8NGM1), 
OR4K1_HUMAN (Q8NGD4), OR4KF_HUMAN (Q8NH41), OR4Q3_HUMAN (Q8NH05), 
OR6C3_HUMAN (Q9NZP0), OR6J1_HUMAN (Q8NGC5), OR7AH_HUMAN (O14581), 
PRPF3_MOUSE (Q922U1), SYFB_SYMTH  (Q67QF2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DGL; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1IOA; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D7F; 2DH1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2EF6; 2EIG; 2ENR; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3UJO; 3UJQ; 3UK9; 3UL2; 4DPN; 4H55; 4I30; 5CNA;

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