Entry: PS00308

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General information about the entry

Entry name [info] LECTIN_LEGUME_ALPHA
Accession [info] PS00308
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins alpha-chain signature.
Pattern [info]
[LIV]-{LA}-[EDQ]-[FYWKR]-V-{VF}-[LIVF]-G-[LF]-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 96 in 96 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 10
Number of 'partial' sequences 8
Precision (true positives / (true positives + false positives)) 82.29 %
Recall (true positives / (true positives + false negatives)) 88.76 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

AR5A_PHAVU  (Q42460), AR5B_PHAVU  (Q41116), ARC1_PHAVU  (P19329), 
ARC2_PHAVU  (P19330), ARC4_PHAVU  (Q43629), CONA_CANBR  (P55915), 
CONA_CANCT  (P81461), CONA_CANEN  (P02866), CONA_CANGL  (P14894), 
CONA_CANLI  (P81460), CONA_CANRO  (P81364), LCB1_ROBPS  (Q41159), 
LCB2_ROBPS  (Q42372), LCB3_ROBPS  (Q41160), LCS1_ROBPS  (Q41162), 
LCS2_ROBPS  (Q41161), LEA1_PHAVU  (P02873), LEA2_PHAVU  (Q41114), 
LEC1_CLAKE  (Q39528), LEC1_CRAMO  (P83721), LEC1_CYTSE  (P22970), 
LEC1_LABAL  (P23558), LEC1_LATOC  (P12306), LEC1_MEDTR  (Q01806), 
LEC1_ULEEU  (P22972), LEC1_VIGUC  (P05045), LEC2_CLAKE  (Q39529), 
LEC2_CYTSC  (P29257), LEC2_CYTSE  (P22971), LEC2_LATOC  (P12307), 
LEC2_MEDTR  (Q01807), LEC2_ULEEU  (P22973), LEC4_GRISI  (P24146), 
LEC5_VIGUC  (P19588), LECA2_LABPU (B3EWQ9), LECA_CRAFL  (P81517), 
LECA_CYMRO  (P86184), LECA_DIOGR  (P08902), LECA_DIOGU  (P81637), 
LECA_DIORO  (P58908), LECA_DIOSC  (B3EWJ2), LECA_DIOVI  (P58907), 
LECA_DIOWI  (P86624), LECA_LABPU  (P38662), LECA_LATAP  (P07441), 
LECA_LATCI  (P07440), LECA_LATCY  (P07442), LECA_LATHI  (P07443), 
LECA_LATOD  (P02869), LECA_LATSA  (P12308), LECA_LATTI  (P07444), 
LECA_SPAPA  (P86352), LECA_VICCR  (P02868), LECA_VICSA  (P16350), 
LECB_SPAPA  (P86353), LECB_STYJP  (P93538), LECG_ARAHY  (P02872), 
LECR_CLAKE  (Q39527), LECS_STYJP  (P93535), LECS_VATGU  (P86893), 
LECS_VATMA  (P81371), LEC_BAUPU   (P16030), LEC_ERYCG   (P83410), 
LEC_ERYCO   (P16404), LEC_LATSP   (P16349), LEC_LENCC   (Q93WH6), 
LEC_LENCO   (Q93X49), LEC_LENCT   (Q8VXF2), LEC_LENCU   (P02870), 
LEC_LOTTE   (P19664), LEC_ONOVI   (P02874), LEC_PEA     (P02867), 
LEC_PHALU   (P16300), LEC_SOYBN   (P05046), LEC_VICFA   (P02871), 
LEC_VICVI   (P56625), PHAE_PHAVU  (P05088), PHAL_PHAVU  (P05087), 
PHAM_PHAVU  (P15231)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

LEC1_PSOTE  (O24313), LEC2_CYMRO  (P86795), LECC1_ARAHY (Q70DJ5), 
LECN_PEA    (P16270), LECR_PEA    (Q40987), LEC_LEUMI   (P42088), 
LEC_VACFA   (P84849), LRK62_ARATH (Q9M021), LRK63_ARATH (Q9M020), 
LRK64_ARATH (Q66GN2)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
8 sequences

LEAH_PHAVU  (P81870), LEC3_ULEEU  (P23032), LEC_CROJU   (P16352), 
LEC_CROPI   (P16351), LEC_MACAX   (P02875), LG29_VIGUS  (P83955), 
LG31_VIGUS  (P83956), PVAP_PHAVU  (P84869)
» More

UniProtKB/Swiss-Prot
False positive sequences
17 sequences

O4A16_HUMAN (Q8NH70), O4A47_HUMAN (Q6IF82), OL470_MOUSE (Q8VF65), 
OL478_MOUSE (Q8VG04), OLF3_CANFA  (Q95156), OR4A4_HUMAN (Q8NGN8), 
OR4A5_HUMAN (Q8NH83), OR4A8_HUMAN (P0C604), OR4CF_HUMAN (Q8NGM1), 
OR4K1_HUMAN (Q8NGD4), OR4KF_HUMAN (Q8NH41), OR4Q3_HUMAN (Q8NH05), 
OR6C3_HUMAN (Q9NZP0), OR6J1_HUMAN (Q8NGC5), OR7AH_HUMAN (O14581), 
PRPF3_MOUSE (Q922U1), SYFB_SYMTH  (Q67QF2)
» More

PDB
[Detailed view]
175 PDB

1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DGL; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1IOA; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D7F; 2DH1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2EF6; 2EIG; 2ENR; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3UJO; 3UJQ; 3UK9; 3UL2; 4DPN; 4H55; 4I30; 4M3C; 5CNA
» More

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