Entry: PS00308

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General information about the entry

Entry name [info] LECTIN_LEGUME_ALPHA
Accession [info] PS00308
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JAN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins alpha-chain signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_03 which contains 547'964 sequence entries.

Total number of hits 96 in 96 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 10
Number of 'partial' sequences 8
Precision (true positives / (true positives + false positives)) 82.29 %
Recall (true positives / (true positives + false negatives)) 88.76 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
79 sequences

AR5A_PHAVU  (Q42460), AR5B_PHAVU  (Q41116), ARC1_PHAVU  (P19329), 
ARC2_PHAVU  (P19330), ARC4_PHAVU  (Q43629), CONA_CANBR  (P55915), 
CONA_CANCT  (P81461), CONA_CANEN  (P02866), CONA_CANGL  (P14894), 
CONA_CANLI  (P81460), CONA_CANRO  (P81364), LCB1_ROBPS  (Q41159), 
LCB2_ROBPS  (Q42372), LCB3_ROBPS  (Q41160), LCS1_ROBPS  (Q41162), 
LCS2_ROBPS  (Q41161), LEA1_PHAVU  (P02873), LEA2_PHAVU  (Q41114), 
LEC1_CLAKE  (Q39528), LEC1_CRAMO  (P83721), LEC1_CYTSE  (P22970), 
LEC1_LABAL  (P23558), LEC1_LATOC  (P12306), LEC1_MEDTR  (Q01806), 
LEC1_ULEEU  (P22972), LEC1_VIGUC  (P05045), LEC2_CLAKE  (Q39529), 
LEC2_CYTSC  (P29257), LEC2_CYTSE  (P22971), LEC2_LATOC  (P12307), 
LEC2_MEDTR  (Q01807), LEC2_ULEEU  (P22973), LEC4_GRISI  (P24146), 
LEC5_VIGUC  (P19588), LECA2_LABPU (B3EWQ9), LECA_CRAFL  (P81517), 
LECA_CYMRO  (P86184), LECA_DIOGR  (P08902), LECA_DIOGU  (P81637), 
LECA_DIORO  (P58908), LECA_DIOSC  (B3EWJ2), LECA_DIOVI  (P58907), 
LECA_DIOWI  (P86624), LECA_LABPU  (P38662), LECA_LATAP  (P07441), 
LECA_LATCI  (P07440), LECA_LATCY  (P07442), LECA_LATHI  (P07443), 
LECA_LATOD  (P02869), LECA_LATSA  (P12308), LECA_LATTI  (P07444), 
LECA_SPAPA  (P86352), LECA_VICCR  (P02868), LECA_VICSA  (P16350), 
LECB_SPAPA  (P86353), LECB_STYJP  (P93538), LECG_ARAHY  (P02872), 
LECR_CLAKE  (Q39527), LECS_STYJP  (P93535), LECS_VATGU  (P86893), 
LECS_VATMA  (P81371), LEC_BAUPU   (P16030), LEC_ERYCG   (P83410), 
LEC_ERYCO   (P16404), LEC_LATSP   (P16349), LEC_LENCC   (Q93WH6), 
LEC_LENCO   (Q93X49), LEC_LENCT   (Q8VXF2), LEC_LENCU   (P02870), 
LEC_LOTTE   (P19664), LEC_ONOVI   (P02874), LEC_PEA     (P02867), 
LEC_PHALU   (P16300), LEC_SOYBN   (P05046), LEC_VICFA   (P02871), 
LEC_VICVI   (P56625), PHAE_PHAVU  (P05088), PHAL_PHAVU  (P05087), 
PHAM_PHAVU  (P15231)
» More

False negative sequences
10 sequences

LEC1_PSOTE  (O24313), LEC2_CYMRO  (P86795), LECC1_ARAHY (Q70DJ5), 
LECN_PEA    (P16270), LECR_PEA    (Q40987), LEC_LEUMI   (P42088), 
LEC_VACFA   (P84849), LRK62_ARATH (Q9M021), LRK63_ARATH (Q9M020), 
» More

'Partial' sequences
8 sequences

LEAH_PHAVU  (P81870), LEC3_ULEEU  (P23032), LEC_CROJU   (P16352), 
LEC_CROPI   (P16351), LEC_MACAX   (P02875), LG29_VIGUS  (P83955), 
LG31_VIGUS  (P83956), PVAP_PHAVU  (P84869)
» More

False positive sequences
17 sequences

O4A16_HUMAN (Q8NH70), O4A47_HUMAN (Q6IF82), OL470_MOUSE (Q8VF65), 
OL478_MOUSE (Q8VG04), OLF3_CANFA  (Q95156), OR4A4_HUMAN (Q8NGN8), 
» More

[Detailed view]
183 PDB

1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DGL; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1IOA; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D7F; 2DH1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2EF6; 2EIG; 2ENR; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3UJO; 3UJQ; 3UK9; 3UL2; 3WCR; 3WCS; 3WOG; 4D69; 4DPN; 4H55; 4I30; 4M3C; 4MYE; 4P9W; 4P9X; 4P9Y; 5CNA
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