Entry: PS00308

General information about the entry

Entry name [info] LECTIN_LEGUME_ALPHA
Accession [info] PS00308
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-DEC-2004 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins alpha-chain signature.
Pattern [info] 
[LIV]-{LA}-[EDQ]-[FYWKR]-V-{VF}-[LIVF]-G-[LF]-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 107 in 107 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits 0
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 10
Number of 'partial' sequences 8
Precision (true positives / (true positives + false positives)) 84.11 %
Recall (true positives / (true positives + false negatives)) 90.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 90 sequences 

AR5A_PHAVU  (Q42460    ), AR5B_PHAVU  (Q41116    ), ARC1_PHAVU  (P19329    ), 

ARC2_PHAVU  (P19330    ), ARC4_PHAVU  (Q43629    ), CONA_CANBR  (P55915    ), 
CONA_CANCT  (P81461    ), CONA_CANEN  (P02866    ), CONA_CANGL  (P14894    ), 
CONA_CANLI  (P81460    ), CONA_CANRO  (P81364    ), CONV_CANCT  (C0HJY1    ), 
FRIL_LABPU  (Q9ZTA9    ), LCB1_ROBPS  (Q41159    ), LCB2_ROBPS  (Q42372    ), 
LCB3_ROBPS  (Q41160    ), LCS1_ROBPS  (Q41162    ), LCS2_ROBPS  (Q41161    ), 
LEA1_PHAVU  (P02873    ), LEA2_PHAVU  (Q41114    ), LEC1_CLAKE  (Q39528    ), 
LEC1_CRAMO  (P83721    ), LEC1_CYTSE  (P22970    ), LEC1_LABAL  (P23558    ), 
LEC1_LATOC  (P12306    ), LEC1_MEDTR  (Q01806    ), LEC1_ULEEU  (P22972    ), 
LEC1_VIGUC  (P05045    ), LEC2_CLAKE  (Q39529    ), LEC2_CYTSC  (P29257    ), 
LEC2_CYTSE  (P22971    ), LEC2_LATOC  (P12307    ), LEC2_MEDTR  (Q01807    ), 
LEC2_ULEEU  (P22973    ), LEC4_GRISI  (P24146    ), LEC5_VIGUC  (P19588    ), 
LECA2_LABPU (B3EWQ9    ), LECA_BIOPE  (J9PBR3    ), LECA_CANBL  (A0A023GPI8), 
LECA_CANBN  (P58906    ), LECA_CANGR  (A0A067XG71), LECA_CRAAG  (P81517    ), 
LECA_CYMRO  (P86184    ), LECA_DIOGR  (P08902    ), LECA_DIOGU  (P81637    ), 
LECA_DIOLA  (C0HK27    ), LECA_DIORF  (C0HK81    ), LECA_DIORO  (P58908    ), 
LECA_DIOSC  (B3EWJ2    ), LECA_DIOVI  (P58907    ), LECA_DIOWI  (P86624    ), 
LECA_LABPU  (P38662    ), LECA_LATAP  (P07441    ), LECA_LATCI  (P07440    ), 
LECA_LATCY  (P07442    ), LECA_LATHI  (P07443    ), LECA_LATOD  (P02869    ), 
LECA_LATSA  (P12308    ), LECA_LATTI  (P07444    ), LECA_SPAPA  (P86352    ), 
LECA_VICCR  (P02868    ), LECA_VICSA  (P16350    ), LECB_SPAPA  (P86353    ), 
LECB_STYJP  (P93538    ), LECC1_CENMI (C0HK20    ), LECC1_CENTO (C0HJX1    ), 
LECG_ARAHY  (P02872    ), LECR_CLAKE  (Q39527    ), LECS_STYJP  (P93535    ), 
LECS_VATGU  (P86893    ), LECS_VATMA  (P81371    ), LEC_BAUPU   (P16030    ), 
LEC_ERYCG   (P83410    ), LEC_ERYCO   (P16404    ), LEC_LATSP   (P16349    ), 
LEC_LENCC   (Q93WH6    ), LEC_LENCO   (Q93X49    ), LEC_LENCT   (Q8VXF2    ), 
LEC_LENCU   (P02870    ), LEC_LOTTE   (P19664    ), LEC_ONOVI   (P02874    ), 
LEC_PEA     (P02867    ), LEC_PHALU   (P16300    ), LEC_SOYBN   (P05046    ), 
LEC_VICFA   (P02871    ), LEC_VICVI   (P56625    ), MALB_MAAAM  (P93248    ), 
PHAE_PHAVU  (P05088    ), PHAL_PHAVU  (P05087    ), PHAM_PHAVU  (P15231    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 10 sequences 

LEC1_PSOTE  (O24313    ), LEC2_CYMRO  (P86795    ), LECC1_ARAHY (Q70DJ5    ), 

LECN_PEA    (P16270    ), LECR_PEA    (Q40987    ), LEC_LEUMI   (P42088    ), 
LEC_VACFA   (P84849    ), LRK62_ARATH (Q9M021    ), LRK63_ARATH (Q9M020    ), 
LRK64_ARATH (Q66GN2    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 8 sequences 

LEAH_PHAVU  (P81870    ), LEC3_ULEEU  (P23032    ), LEC_CROJU   (P16352    ), 

LEC_CROPI   (P16351    ), LEC_MACAX   (P02875    ), LG29_VIGUS  (P83955    ), 
LG31_VIGUS  (P83956    ), PVAP_PHAVU  (P84869    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 17 sequences 

O4A16_HUMAN (Q8NH70    ), O4A47_HUMAN (Q6IF82    ), OL470_MOUSE (Q8VF65    ), 

OL478_MOUSE (Q8VG04    ), OLF3_CANLF  (Q95156    ), OR4A4_HUMAN (Q8NGN8    ), 
OR4A5_HUMAN (Q8NH83    ), OR4A8_HUMAN (P0C604    ), OR4CF_HUMAN (Q8NGM1    ), 
OR4K1_HUMAN (Q8NGD4    ), OR4KF_HUMAN (Q8NH41    ), OR4Q3_HUMAN (Q8NH05    ), 
OR6C3_HUMAN (Q9NZP0    ), OR6J1_HUMAN (Q8NGC5    ), OR7AH_HUMAN (O14581    ), 
PRPF3_MOUSE (Q922U1    ), SYFB_SYMTH  (Q67QF2    )
» more

PDB
[Detailed view]		 209 PDB

1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DGL; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1IOA; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QMO; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D7F; 2DH1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2EF6; 2EIG; 2ENR; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3U4X; 3UJO; 3UJQ; 3UK9; 3UL2; 3WCR; 3WCS; 3WOG; 4CZS; 4D69; 4DPN; 4H55; 4I30; 4K1Y; 4K1Z; 4K20; 4K21; 4L8Q; 4M3C; 4MYE; 4NOT; 4P14; 4P9W; 4P9X; 4P9Y; 4PCR; 4PF5; 4TYS; 4TZD; 4U2A; 4U36; 4WV8; 4XTM; 4XTP; 4XXA; 4Z8B; 5AVA; 5BYN; 5CNA; 5EYX; 5EYY; 5F5Q
» more

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