Entry: PS00308

General information about the entry

Entry name [info] LECTIN_LEGUME_ALPHA
Accession [info] PS00308
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); OCT-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins alpha-chain signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_11 which contains 549'832 sequence entries.

Total number of hits 97 in 97 different sequences
Number of true positive hits 80 in 80 different sequences
Number of 'unknown' hits 0
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 10
Number of 'partial' sequences 8
Precision (true positives / (true positives + false positives)) 82.47 %
Recall (true positives / (true positives + false negatives)) 88.89 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
80 sequences

AR5A_PHAVU  (Q42460), AR5B_PHAVU  (Q41116), ARC1_PHAVU  (P19329), 
ARC2_PHAVU  (P19330), ARC4_PHAVU  (Q43629), CONA_CANBR  (P55915), 
CONA_CANCT  (P81461), CONA_CANEN  (P02866), CONA_CANGL  (P14894), 
CONA_CANLI  (P81460), CONA_CANRO  (P81364), FRIL_LABPU  (Q9ZTA9), 
LCB1_ROBPS  (Q41159), LCB2_ROBPS  (Q42372), LCB3_ROBPS  (Q41160), 
LCS1_ROBPS  (Q41162), LCS2_ROBPS  (Q41161), LEA1_PHAVU  (P02873), 
LEA2_PHAVU  (Q41114), LEC1_CLAKE  (Q39528), LEC1_CRAMO  (P83721), 
LEC1_CYTSE  (P22970), LEC1_LABAL  (P23558), LEC1_LATOC  (P12306), 
LEC1_MEDTR  (Q01806), LEC1_ULEEU  (P22972), LEC1_VIGUC  (P05045), 
LEC2_CLAKE  (Q39529), LEC2_CYTSC  (P29257), LEC2_CYTSE  (P22971), 
LEC2_LATOC  (P12307), LEC2_MEDTR  (Q01807), LEC2_ULEEU  (P22973), 
LEC4_GRISI  (P24146), LEC5_VIGUC  (P19588), LECA2_LABPU (B3EWQ9), 
LECA_CRAFL  (P81517), LECA_CYMRO  (P86184), LECA_DIOGR  (P08902), 
LECA_DIOGU  (P81637), LECA_DIORO  (P58908), LECA_DIOSC  (B3EWJ2), 
LECA_DIOVI  (P58907), LECA_DIOWI  (P86624), LECA_LABPU  (P38662), 
LECA_LATAP  (P07441), LECA_LATCI  (P07440), LECA_LATCY  (P07442), 
LECA_LATHI  (P07443), LECA_LATOD  (P02869), LECA_LATSA  (P12308), 
LECA_LATTI  (P07444), LECA_SPAPA  (P86352), LECA_VICCR  (P02868), 
LECA_VICSA  (P16350), LECB_SPAPA  (P86353), LECB_STYJP  (P93538), 
LECG_ARAHY  (P02872), LECR_CLAKE  (Q39527), LECS_STYJP  (P93535), 
LECS_VATGU  (P86893), LECS_VATMA  (P81371), LEC_BAUPU   (P16030), 
LEC_ERYCG   (P83410), LEC_ERYCO   (P16404), LEC_LATSP   (P16349), 
LEC_LENCC   (Q93WH6), LEC_LENCO   (Q93X49), LEC_LENCT   (Q8VXF2), 
LEC_LENCU   (P02870), LEC_LOTTE   (P19664), LEC_ONOVI   (P02874), 
LEC_PEA     (P02867), LEC_PHALU   (P16300), LEC_SOYBN   (P05046), 
LEC_VICFA   (P02871), LEC_VICVI   (P56625), PHAE_PHAVU  (P05088), 
PHAL_PHAVU  (P05087), PHAM_PHAVU  (P15231)
» more

False negative sequences
10 sequences

LEC1_PSOTE  (O24313), LEC2_CYMRO  (P86795), LECC1_ARAHY (Q70DJ5), 
LECN_PEA    (P16270), LECR_PEA    (Q40987), LEC_LEUMI   (P42088), 
LEC_VACFA   (P84849), LRK62_ARATH (Q9M021), LRK63_ARATH (Q9M020), 
» more

'Partial' sequences
8 sequences

LEAH_PHAVU  (P81870), LEC3_ULEEU  (P23032), LEC_CROJU   (P16352), 
LEC_CROPI   (P16351), LEC_MACAX   (P02875), LG29_VIGUS  (P83955), 
LG31_VIGUS  (P83956), PVAP_PHAVU  (P84869)
» more

False positive sequences
17 sequences

O4A16_HUMAN (Q8NH70), O4A47_HUMAN (Q6IF82), OL470_MOUSE (Q8VF65), 
OL478_MOUSE (Q8VG04), OLF3_CANFA  (Q95156), OR4A4_HUMAN (Q8NGN8), 
» more

[Detailed view]
194 PDB

1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DGL; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1IOA; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QMO; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D7F; 2DH1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2EF6; 2EIG; 2ENR; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3UJO; 3UJQ; 3UK9; 3UL2; 3WCR; 3WCS; 3WOG; 4CZS; 4D69; 4DPN; 4H55; 4I30; 4M3C; 4MYE; 4NOT; 4P14; 4P9W; 4P9X; 4P9Y; 4PCR; 4PF5; 4TYS; 4TZD; 4U2A; 4U36; 4Z8B; 5CNA
» more

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