PROSITE entry PS00310
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
Entry name [info] | LAMP_1 |
Accession [info] | PS00310 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00280 |
Name and characterization of the entry
Description [info] | Lysosome-associated membrane glycoproteins duplicated domain signature. |
Pattern [info] |
[STA]-C-[LIVM]-[LIVMFYW]-A-x-[LIVMFYW]-x(3)-[LIVMFYW]-x(3)-Y. |
Numerical results [info]
Total number of hits | 28 in 23 different sequences |
Number of true positive hits | 23 in 18 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 5 in 5 different sequences |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 82.14 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 2 |
Site [info] | disulfide at position 2 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
18 sequences
LAMP1_BOVIN (Q05204), LAMP1_CHICK (P05300), LAMP1_CRIGR (P49129), LAMP1_HUMAN (P11279), LAMP1_MOUSE (P11438), LAMP1_RAT (P14562), LAMP2_CHICK (Q90617), LAMP2_CRIGR (P49130), LAMP2_HUMAN (P13473), LAMP2_MOUSE (P17047), LAMP2_RAT (P17046), LAMP5_BOVIN (A4FV27), LAMP5_DANRE (A8WFR0), LAMP5_HUMAN (Q9UJQ1), LAMP5_MOUSE (Q9D387), LAMP5_PONAB (Q5R5V2), LAMP5_RAT (Q5PPI4), LAMP5_XENTR (A4IGL3)» more
|
UniProtKB/Swiss-Prot False positive sequences |
5 sequences
FTSW_IDILO (Q5R0M2), MTMRA_MOUSE (Q7TPM9), MTRAA_XENLA (Q5U581), MTRAB_XENLA (Q6NU08), SCP43_ARATH (Q84W27)» more |
PDB [Detailed view] |
5 PDB
5GV0; 5GV3; 8ATH; 8FY5; 8FYF |