Entry: PS00310

General information about the entry
Entry name LAMP_1
Accession number PS00310
Entry type PATTERN
Date APR-1990 (CREATED); APR-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00280
Name and characterization of the entry
DescriptionLysosome-associated membrane glycoproteins duplicated domain signature.
Pattern [STA]-C-[LIVM]-[LIVMFYW]-A-x-[LIVMFYW]-x(3)-[LIVMFYW]-x(3)-Y.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 28 hits in 23 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 23 hits in 18 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 5 hits in 5 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 82.14 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • `Interesting' site in the pattern: 2,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
LAMP1_BOVIN (Q05204), LAMP1_CHICK (P05300), LAMP1_CRIGR (P49129), 
LAMP1_HUMAN (P11279), LAMP1_MOUSE (P11438), LAMP1_RAT   (P14562), 
LAMP2_CHICK (Q90617), LAMP2_CRIGR (P49130), LAMP2_HUMAN (P13473), 
LAMP2_MOUSE (P17047), LAMP2_RAT   (P17046), LAMP5_BOVIN (A4FV27), 
LAMP5_DANRE (A8WFR0), LAMP5_HUMAN (Q9UJQ1), LAMP5_MOUSE (Q9D387), 
LAMP5_PONAB (Q5R5V2), LAMP5_RAT   (Q5PPI4), LAMP5_XENTR (A4IGL3)
False positive hits (sequences which do not belong to the set under consideration):
FTSW_IDILO  (Q5R0M2), MTMRA_MOUSE (Q7TPM9), MTRAA_XENLA (Q5U581), 
MTRAB_XENLA (Q6NU08), SCP43_ARATH (Q84W27)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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