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Entry: PS00310

General information about the entry

Entry name [info] LAMP_1
Accession [info] PS00310
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-APR-1990 DATA UPDATE; 27-SEP-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00280

Name and characterization of the entry

Description [info] Lysosome-associated membrane glycoproteins duplicated domain signature.
Pattern [info]
[STA]-C-[LIVM]-[LIVMFYW]-A-x-[LIVMFYW]-x(3)-[LIVMFYW]-x(3)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_09 which contains 555'594 sequence entries.


Total number of hits 28 in 23 different sequences
Number of true positive hits 23 in 18 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 82.14 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] disulfide at position 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
18 sequences

LAMP1_BOVIN (Q05204    ), LAMP1_CHICK (P05300    ), LAMP1_CRIGR (P49129    ), 
LAMP1_HUMAN (P11279    ), LAMP1_MOUSE (P11438    ), LAMP1_RAT   (P14562    ), 
LAMP2_CHICK (Q90617    ), LAMP2_CRIGR (P49130    ), LAMP2_HUMAN (P13473    ), 
LAMP2_MOUSE (P17047    ), LAMP2_RAT   (P17046    ), LAMP5_BOVIN (A4FV27    ), 
LAMP5_DANRE (A8WFR0    ), LAMP5_HUMAN (Q9UJQ1    ), LAMP5_MOUSE (Q9D387    ), 
LAMP5_PONAB (Q5R5V2    ), LAMP5_RAT   (Q5PPI4    ), LAMP5_XENTR (A4IGL3    )
» more

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

FTSW_IDILO  (Q5R0M2    ), MTMRA_MOUSE (Q7TPM9    ), MTRAA_XENLA (Q5U581    ), 
MTRAB_XENLA (Q6NU08    ), SCP43_ARATH (Q84W27    )
» more

PDB
[Detailed view]
1 PDB

5GV0

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