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Entry: PS00344
General information about the entry
Entry nameGATA_ZN_FINGER_1
Accession numberPS00344
Entry typePATTERN
DateNOV-1990 (CREATED); APR-2006 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00300
Name and characterization of the entry
DescriptionGATA-type zinc finger domain.
PatternC-x-[DNEHQSTI]-C-x(4,6)-[ST]-x(2)-[WM]-[HR]-[RKENAMSLPGQT]-x(3,4)-[GNEP]- x(3,6)-C-[NES]-[ASNR]-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 158 hits in 115 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 158 hits in 115 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 36
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 81.44 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • `Interesting' site in the pattern: 1,zinc
  • `Interesting' site in the pattern: 4,zinc
  • `Interesting' site in the pattern: 14,zinc
  • `Interesting' site in the pattern: 17,zinc
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
AMS2_SCHPO  (Q9URT4), AREA_ASPNG  (O13412), AREA_ASPOR  (O13415), 
AREA_EMENI  (P17429), AREA_GIBFU  (P78688), AREA_PENCH  (Q01582), 
AREA_PENRO  (O13508), ASD4_NEUCR  (Q9HEV5), ASH1_YEAST  (P34233), 
CGPB_FUSSO  (Q00858), DAL80_YEAST (P26343), ECM23_YEAST (Q02710), 
ELT1_CAEEL  (P28515), ELT2_CAEEL  (Q10655), FEP1_SCHPO  (Q10134), 
GAF1_SCHPO  (Q10280), GAT10_ARATH (Q8VZP4), GAT11_ARATH (Q6DBP8), 
GAT12_ARATH (P69781), GAT13_ARATH (Q9SKN6), GAT14_ARATH (Q9M1U2), 
GAT15_ARATH (Q8LG10), GAT16_ARATH (Q9FJ10), GAT17_ARATH (Q9LIB5), 
GAT18_ARATH (Q8LC79), GAT19_ARATH (Q6QPM2), GAT1A_XENLA (P23767), 
GAT1B_XENLA (P23768), GAT1_YEAST  (P43574), GAT20_ARATH (Q9ZPX0), 
GAT21_ARATH (Q5HZ36), GAT22_ARATH (Q9SZI6), GAT23_ARATH (Q8LC59), 
GAT24_ARATH (Q8GXL7), GAT25_ARATH (Q9LRH6), GAT26_ARATH (Q8W4H1), 
GAT27_ARATH (Q5PP38), GAT28_ARATH (Q8H1G0), GAT2_YEAST  (P40209), 
GAT3_YEAST  (Q07928), GAT4_YEAST  (P40569), GAT5A_XENLA (P43695), 
GAT5B_XENLA (P43696), GAT6A_XENLA (Q91678), GAT6B_XENLA (P70005), 
GATA1_ARATH (Q8LAU9), GATA1_CHICK (P17678), GATA1_HUMAN (P15976), 
GATA1_MOUSE (P17679), GATA1_RAT   (P43429), GATA2_ARATH (O49741), 
GATA2_CHICK (P23824), GATA2_HUMAN (P23769), GATA2_MOUSE (O09100), 
GATA2_RAT   (Q924Y4), GATA2_XENLA (P23770), GATA3_ARATH (Q8L4M6), 
GATA3_BOVIN (Q08DV0), GATA3_CHICK (P23825), GATA3_DANRE (Q91428), 
GATA3_HUMAN (P23771), GATA3_MOUSE (P23772), GATA3_XENLA (P23773), 
GATA4_ARATH (O49743), GATA4_CANFA (Q0Q0E4), GATA4_CHICK (P43691), 
GATA4_HUMAN (P43694), GATA4_MOUSE (Q08369), GATA4_RAT   (P46152), 
GATA4_XENLA (Q91677), GATA5_ARATH (Q9FH57), GATA5_BOVIN (Q3SZJ5), 
GATA5_CHICK (P43692), GATA5_HUMAN (Q9BWX5), GATA5_MOUSE (P97489), 
GATA6_ARATH (Q9SD38), GATA6_CHICK (P43693), GATA6_HUMAN (Q92908), 
GATA6_MOUSE (Q61169), GATA6_PIG   (Q95JA5), GATA6_RAT   (P46153), 
GATA7_ARATH (O65515), GATA8_ARATH (Q9SV30), GATA9_ARATH (O82632), 
GATAB_BOMMO (P52167), GATAC_DROME (P91623), GLN3_YEAST  (P18494), 
GTAB_DICDI  (Q54V32), GTAE_DICDI  (Q55GK0), GTAF_DICDI  (Q55EQ0), 
GTAG_DICDI  (Q55C49), GTAH_DICDI  (Q75JZ0), GTAI_DICDI  (Q54TM6), 
GTAK_DICDI  (Q5KSV0), GTAL_DICDI  (Q54NM5), GTAM_DICDI  (Q54L83), 
GTAN_DICDI  (Q54KX0), GTAP_DICDI  (B0G188), GTAR_DICDI  (Q54WY0), 
GTAU_DICDI  (Q54US7), GZF3_YEAST  (P42944), NIT2_NEUCR  (P19212), 
NRFA_PENUR  (Q92269), NUT1_MAGO7  (Q01168), P66A_HUMAN  (Q86YP4), 
PNR_DROME   (P52168), SREP_PENCH  (Q92259), SRP_DROME   (P52172), 
TRPS1_HUMAN (Q9UHF7), TRPS1_MOUSE (Q925H1), TRPS1_XENLA (Q90ZS6), 
URB1_USTMA  (P40349), WC1_NEUCR   (Q01371), WC2_NEUCR   (P78714), 
YCF8_SCHPO  (O94720)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
EGL27_CAEEL (Q09228), GAT29_ARATH (Q9LT45), GATA1_BOVIN (A2VDY6), 
GATD1_DANRE (Q1L8G7), GATD1_HUMAN (Q8WUU5), GATD1_MOUSE (Q920S3), 
GATD1_XENLA (Q7ZXY4), GTAA_DICDI  (Q550D5), GTAC_DICDI  (Q75JZ1), 
GTAD_DICDI  (Q54L72), GTAJ_DICDI  (Q54TE3), GTAO_DICDI  (Q54HA4), 
GTAQ_DICDI  (Q54L80), GTAT_DICDI  (Q54V37), GTAV_DICDI  (Q54UG8), 
GTAW_DICDI  (Q54L82), GTAX_DICDI  (Q54FV1), GTAY_DICDI  (Q54X31), 
MTA1_HUMAN  (Q13330), MTA1_MOUSE  (Q8K4B0), MTA1_RAT    (Q62599), 
MTA2_HUMAN  (O94776), MTA2_MOUSE  (Q9R190), MTA3_BOVIN  (A6QL72), 
MTA3_HUMAN  (Q9BTC8), MTA3_MOUSE  (Q924K8), P66A_MOUSE  (Q8CHY6), 
P66B_HUMAN  (Q8WXI9), P66B_MOUSE  (Q8VHR5), RCOR_CAEEL  (Q18919), 
RERE_HUMAN  (Q9P2R6), RERE_MOUSE  (Q80TZ9), RERE_RAT    (Q62901), 
SRD1_YEAST  (P09007), ZGLP1_HUMAN (P0C6A0), ZGLP1_MOUSE (Q1WG82)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1GAT; 1GAU; 1GNF; 1Y0J; 2GAT; 2L6Y; 2L6Z; 2VUS; 2VUT; 2VUU; 3DFV; 3DFX; 3GAT; 4GAT; 5GAT; 6GAT; 7GAT;

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