Entry: PS00344

General information about the entry

Entry name [info] GATA_ZN_FINGER_1
Accession [info] PS00344
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); APR-2006 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00300

Name and characterization of the entry

Description [info] GATA-type zinc finger domain.
Pattern [info]
C-x-[DNEHQSTI]-C-x(4,6)-[ST]-x(2)-[WM]-[HR]-[RKENAMSLPGQT]-x(3,4)-[GNEP]-
x(3,6)-C-[NES]-[ASNR]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 169 in 125 different sequences
Number of true positive hits 169 in 125 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 38
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 81.64 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] zinc at position 1
Site [info] zinc at position 4
Site [info] zinc at position 14
Site [info] zinc at position 17
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
125 sequences

AMS2_SCHPO  (Q9URT4    ), AREA_ASPNG  (O13412    ), AREA_ASPOR  (O13415    ), 
AREA_EMENI  (P17429    ), AREA_GIBFU  (P78688    ), AREA_PENCH  (Q01582    ), 
AREA_PENRO  (O13508    ), ASD4_NEUCR  (Q9HEV5    ), ASH1_YEAST  (P34233    ), 
CGPB_FUSSO  (Q00858    ), DAL80_YEAST (P26343    ), ECM23_YEAST (Q02710    ), 
ELT1_CAEEL  (P28515    ), ELT2_CAEEL  (Q10655    ), ELT7_CAEEL  (O61924    ), 
FEP1_SCHPO  (Q10134    ), GAF1_SCHPO  (Q10280    ), GAT10_ARATH (Q8VZP4    ), 
GAT11_ARATH (Q6DBP8    ), GAT12_ARATH (P69781    ), GAT13_ARATH (Q9SKN6    ), 
GAT14_ARATH (Q9M1U2    ), GAT15_ARATH (Q8LG10    ), GAT16_ARATH (Q9FJ10    ), 
GAT17_ARATH (Q9LIB5    ), GAT17_ORYSJ (Q6Z433    ), GAT18_ARATH (Q8LC79    ), 
GAT18_ORYSI (A2XKR7    ), GAT18_ORYSJ (Q10F25    ), GAT19_ARATH (Q6QPM2    ), 
GAT19_ORYSI (B8AR30    ), GAT19_ORYSJ (Q0DNU1    ), GAT1A_XENLA (P23767    ), 
GAT1B_XENLA (P23768    ), GAT1_CANAL  (Q5A432    ), GAT1_YEAST  (P43574    ), 
GAT20_ARATH (Q9ZPX0    ), GAT20_ORYSJ (Q5Z4U5    ), GAT21_ARATH (Q5HZ36    ), 
GAT22_ARATH (Q9SZI6    ), GAT23_ARATH (Q8LC59    ), GAT24_ARATH (Q8GXL7    ), 
GAT25_ARATH (Q9LRH6    ), GAT26_ARATH (Q8W4H1    ), GAT27_ARATH (Q5PP38    ), 
GAT28_ARATH (Q8H1G0    ), GAT2_YEAST  (P40209    ), GAT3_YEAST  (Q07928    ), 
GAT4_YEAST  (P40569    ), GAT5A_XENLA (P43695    ), GAT5B_XENLA (P43696    ), 
GAT6A_XENLA (Q91678    ), GAT6B_XENLA (P70005    ), GATA1_ARATH (Q8LAU9    ), 
GATA1_CHICK (P17678    ), GATA1_HUMAN (P15976    ), GATA1_MOUSE (P17679    ), 
GATA1_RAT   (P43429    ), GATA2_ARATH (O49741    ), GATA2_CHICK (P23824    ), 
GATA2_HUMAN (P23769    ), GATA2_MOUSE (O09100    ), GATA2_RAT   (Q924Y4    ), 
GATA2_XENLA (P23770    ), GATA3_ARATH (Q8L4M6    ), GATA3_BOVIN (Q08DV0    ), 
GATA3_CHICK (P23825    ), GATA3_DANRE (Q91428    ), GATA3_HUMAN (P23771    ), 
GATA3_MOUSE (P23772    ), GATA3_XENLA (P23773    ), GATA4_ARATH (O49743    ), 
GATA4_CANLF (Q0Q0E4    ), GATA4_CHICK (P43691    ), GATA4_HUMAN (P43694    ), 
GATA4_MOUSE (Q08369    ), GATA4_RAT   (P46152    ), GATA4_XENLA (Q91677    ), 
GATA5_ARATH (Q9FH57    ), GATA5_BOVIN (Q3SZJ5    ), GATA5_CHICK (P43692    ), 
GATA5_HUMAN (Q9BWX5    ), GATA5_MOUSE (P97489    ), GATA6_ARATH (Q9SD38    ), 
GATA6_CHICK (P43693    ), GATA6_HUMAN (Q92908    ), GATA6_MOUSE (Q61169    ), 
GATA6_PIG   (Q95JA5    ), GATA6_RAT   (P46153    ), GATA7_ARATH (O65515    ), 
GATA8_ARATH (Q9SV30    ), GATA9_ARATH (O82632    ), GATAB_BOMMO (P52167    ), 
GATAC_DROME (P91623    ), GLN3_YEAST  (P18494    ), GTAB_DICDI  (Q54V32    ), 
GTAE_DICDI  (Q55GK0    ), GTAF_DICDI  (Q55EQ0    ), GTAG_DICDI  (Q55C49    ), 
GTAH_DICDI  (Q75JZ0    ), GTAI_DICDI  (Q54TM6    ), GTAK_DICDI  (Q5KSV0    ), 
GTAL_DICDI  (Q54NM5    ), GTAM_DICDI  (Q54L83    ), GTAN_DICDI  (Q54KX0    ), 
GTAP_DICDI  (B0G188    ), GTAR_DICDI  (Q54WY0    ), GTAU_DICDI  (Q54US7    ), 
GZF3_CANAL  (Q5A201    ), GZF3_YEAST  (P42944    ), NIT2_NEUCR  (P19212    ), 
NRFA_PENUR  (Q92269    ), NUT1_MAGO7  (Q01168    ), P66A_HUMAN  (Q86YP4    ), 
PNR_DROME   (P52168    ), SFU1_CANAL  (Q5AP95    ), SREP_PENCH  (Q92259    ), 
SRP_DROME   (P52172    ), TRPS1_HUMAN (Q9UHF7    ), TRPS1_MOUSE (Q925H1    ), 
TRPS1_XENLA (Q90ZS6    ), URB1_USTMA  (P40349    ), WC1_NEUCR   (Q01371    ), 
WC2_NEUCR   (P78714    ), YCF8_SCHPO  (O94720    )
» more

UniProtKB/Swiss-Prot
False negative sequences
38 sequences

ASH1_CANAL  (Q5A5Q6    ), BRG1_CANAL  (Q59LY1    ), EGL27_CAEEL (Q09228    ), 
GAT29_ARATH (Q9LT45    ), GATA1_BOVIN (A2VDY6    ), GATD1_DANRE (Q1L8G7    ), 
GATD1_HUMAN (Q8WUU5    ), GATD1_MOUSE (Q920S3    ), GATD1_XENLA (Q7ZXY4    ), 
GTAA_DICDI  (Q550D5    ), GTAC_DICDI  (Q75JZ1    ), GTAD_DICDI  (Q54L72    ), 
GTAJ_DICDI  (Q54TE3    ), GTAO_DICDI  (Q54HA4    ), GTAQ_DICDI  (Q54L80    ), 
GTAT_DICDI  (Q54V37    ), GTAV_DICDI  (Q54UG8    ), GTAW_DICDI  (Q54L82    ), 
GTAX_DICDI  (Q54FV1    ), GTAY_DICDI  (Q54X31    ), MTA1_HUMAN  (Q13330    ), 
MTA1_MOUSE  (Q8K4B0    ), MTA1_RAT    (Q62599    ), MTA2_HUMAN  (O94776    ), 
MTA2_MOUSE  (Q9R190    ), MTA3_BOVIN  (A6QL72    ), MTA3_HUMAN  (Q9BTC8    ), 
MTA3_MOUSE  (Q924K8    ), P66A_MOUSE  (Q8CHY6    ), P66B_HUMAN  (Q8WXI9    ), 
P66B_MOUSE  (Q8VHR5    ), RCOR_CAEEL  (Q18919    ), RERE_HUMAN  (Q9P2R6    ), 
RERE_MOUSE  (Q80TZ9    ), RERE_RAT    (Q62901    ), SRD1_YEAST  (P09007    ), 
ZGLP1_HUMAN (P0C6A0    ), ZGLP1_MOUSE (Q1WG82    )
» more

PDB
[Detailed view]
23 PDB

1GAT; 1GAU; 1GNF; 1Y0J; 2GAT; 2L6Y; 2L6Z; 2M9W; 2VUS; 2VUT; 2VUU; 3DFV; 3DFX; 3GAT; 3VD6; 3VEK; 4GAT; 4HC7; 4HC9; 4HCA; 5GAT; 6GAT; 7GAT
» more

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