PROSITE entry PS00350
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General information about the entry
| Entry name [info] | MADS_BOX_1 |
| Accession [info] | PS00350 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00302 |
Name and characterization of the entry
| Description [info] | MADS-box domain signature. |
| Pattern [info] |
[RGS]-x-[RKS]-x(5)-[IL]-x-[DNGSK]-x(3)-[KR]-x(2)-T-[FY]-x-[RK](3)-x(2)- [LIVM]-x-[KE]-K-[AT]-x-[EQ]-[LIVM]-[STA]-x-L-x(4)-[LIVM]-x-[LIVM]- [LIVMT]-[LIVM]-x(6)-[LIVMFC]-x(2)-[FYLS]. |
Numerical results [info]
| Total number of hits | 168 in 168 different sequences |
| Number of true positive hits | 168 in 168 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 37 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 81.95 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
168 sequences
1AP1_BRAOT (Q96355), 2AP1_BRAOT (Q96356), 3AP1_BRAOL (Q39371), AG104_ARATH (Q9LM46), AG11C_VITVI (F6I457), AG11S_VITVI (A0A217EJJ0), AGL11_ARATH (Q38836), AGL12_ARATH (Q38841), AGL13_ARATH (Q38837), AGL14_ARATH (Q38838), AGL15_ARATH (Q38847), AGL15_BRANA (Q39295), AGL16_ARATH (A2RVQ5), AGL17_ARATH (Q38840), AGL18_ARATH (Q9M2K8), AGL19_ARATH (O82743), AGL1_ARATH (P29381), AGL21_ARATH (Q9SZJ6), AGL24_ARATH (O82794), AGL31_ARATH (Q9FPN7), AGL3_ARATH (P29383), AGL42_ARATH (Q9FIS1), AGL5_ARATH (P29385), AGL66_ARATH (Q1PFC2), AGL6_ARATH (P29386), AGL8_ARATH (Q38876), AGL8_SINAL (Q41274), AGL8_SOLCO (O22328), AGL8_SOLLC (Q40170), AGL8_SOLTU (Q42429), AGL9_ARADE (Q38694), AGL9_PETHY (Q03489), AGL9_SINAL (O04067), AGL9_SOLLC (Q42464), AG_ARATH(P17839), AG_BRANA(Q01540), AG_PANGI(Q40872), AG_PETHY(Q40885), AG_SOLLC(Q40168), AG_TOBAC(Q43585), ANR1_ARATH (Q9SI38), AP1A_BRAOA (B4YPW6), AP1A_BRAOB (Q8GTF5), AP1C_BRAOA (B4YPV4), AP1C_BRAOB (Q8GTF4), AP1_ARALL (D7KWY6), AP1_ARATH (P35631), AP1_BRARP (P0DI14), AP1_CITSI (A2IB53), AP1_SINAL (Q41276), AP1_VITVI (Q6E6S7), AP3_ARATH (P35632), AP3_VITVI (E0CPH4), ARGR1_YEAST (P07249), CALA_BRAOB (Q6R4R9), CALB_BRAOB (Q6R4R8), CALC_BRAOB (Q6R4R7), CALD_BRAOB (Q6R4R6), CAL_ARALL (D7KQR8), CAL_ARATH (Q39081), CAL_BRAOT (Q39375), CAL_BRARC (Q6R4S6), CAL_BRARP (Q9SBK9), CAL_BRARR (Q6R4S3), CMB1_DIACA (Q39685), CMB2_DIACA (Q42498), DEF21_ANTMA (Q8RVL4), DEFA_ANTMA (P23706), EJ2_SOLLC (Q7Y040), FBP1_PETHY (Q03488), FBP24_PETHY (Q9ATE5), FLC_ARATH (Q9S7Q7), FULL_VITVI (D7SMN6), GGM13_GNEGN (Q9XGJ4), GLOB_ANTMA (Q03378), GLOB_TOBAC (Q03416), J2_SOLLC(K4DEK0), JOIN_SOLLC (Q9FUY6), M17_MAIZE (Q8VWM8), MAD13_ORYSJ (Q2QW53), MAD14_ORYSI (P0C5B1), MAD14_ORYSJ (Q10CQ1), MAD17_ORYSJ (Q7XUN2), MAD21_ORYSJ (Q8RU31), MAD22_ORYSJ (Q9XJ66), MAD23_ORYSJ (Q6VAM4), MAD25_ORYSJ (Q84NC5), MAD26_ORYSI (A2YQK9), MAD26_ORYSJ (Q0J8G8), MAD27_ORYSJ (Q6EP49), MAD29_ORYSJ (Q6H711), MAD31_ORYSJ (Q84NC2), MAD32_ORYSJ (Q8S151), MAD33_ORYSJ (Q2QW55), MAD34_ORYSJ (Q6Q9H6), MAD47_ORYSJ (Q5K4R0), MAD50_ORYSJ (Q9XJ60), MAD55_ORYSJ (Q69TG5), MAD56_ORYSI (A2Z9Q7), MAD56_ORYSJ (P0C5B2), MAD57_ORYSJ (Q6Z6W2), MAD58_ORYSJ (Q2V0P1), MADS1_ORYSI (A2XDY1), MADS1_ORYSJ (Q10PZ9), MADS1_PETHY (Q07472), MADS1_VITVI (Q93XH4), MADS2_ORYSJ (Q40702), MADS2_PETHY (Q07474), MADS2_VITVI (Q8LLR2), MADS3_ORYSJ (Q40704), MADS3_VITVI (Q8LLR1), MADS4_SOLLC (K4BND8), MADS4_VITVI (Q8LLR0), MADS5_ORYSI (A2Y9P0), MADS5_ORYSJ (Q0DEB8), MADS6_ORYSJ (Q6EU39), MADS7_ORYSI (P0C5B0), MADS7_ORYSJ (Q0J466), MADS8_ORYSJ (Q9SAR1), MADS9_VITVI (Q0HA25), MBX1_SCHPO (O42954), MCM1_YEAST (P11746), MEF2A_BOVIN (A2VDZ3), MEF2A_CHICK (Q9W6U8), MEF2A_HUMAN (Q02078), MEF2A_MOUSE (Q60929), MEF2A_PIG (A2ICN5), MEF2A_PONAB (Q5REW7), MEF2A_RAT (Q2MJT0), MEF2A_XENLA (Q03414), MEF2B_HUMAN (Q02080), MEF2B_MOUSE (O55087), MEF2C_BOVIN (Q2KIA0), MEF2C_HUMAN (Q06413), MEF2C_MOUSE (Q8CFN5), MEF2C_PIG (A4UTP7), MEF2C_PONAB (Q5R444), MEF2C_RAT (A0A096MJY4), MEF2D_HUMAN (Q14814), MEF2D_MOUSE (Q63943), MEF2D_RAT (O89038), MEF2D_XENLA (Q03413), MEF2_CAEEL (Q9U325), MEF2_DROME (P40791), PIST_ARATH (P48007), PMAP1_SCHPO (P78926), PVG4_SCHPO (Q9HGP0), RLM1_YEAST (Q12224), RLMA_ASPFC (B0XYE0), RLMA_ASPFU (Q4WX78), SEP1_ARATH (P29382), SEP2_ARATH (P29384), SEP3_ARATH (O22456), SMP1_YEAST (P38128), SOC1_ARATH (O64645), SRFA_DICDI (Q54TY7), SRFB_DICDI (Q54RY6), SRFC_DICDI (Q55F37), SRF_CAEEL (Q18955), SRF_CHICK (Q90718), SRF_DROME (Q24535), SRF_HUMAN (P11831), SRF_MOUSE (Q9JM73), SRF_XENLA (P23790), SVP_ARATH (Q9FVC1), TM6_VITVI (Q003J2), TT16_ARATH (Q8RYD9), VRN1_BRADI (I1GN76)» more
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| UniProtKB/Swiss-Prot False negative sequences |
37 sequences
AG103_ARATH (Q9LSB2), AGL23_ARATH (O80807), AGL27_ARATH (Q9AT76), AGL28_ARATH (Q9LMM8), AGL29_ARATH (O64703), AGL30_ARATH (Q1PFA4), AGL36_ARATH (Q7XJK6), AGL49_ARATH (Q9ZUI9), AGL53_ARATH (Q7X9N2), AGL61_ARATH (Q4PSU4), AGL62_ARATH (Q9FKK2), AGL63_ARATH (Q9SA07), AGL70_ARATH (Q9LSR7), AGL71_ARATH (Q9LT93), AGL72_ARATH (Q9FLH5), AGL75_ARATH (Q9FLL0), AGL80_ARATH (Q9FJK3), AGL82_ARATH (Q9FIM0), AGL86_ARATH (Q9C6V3), AGL90_ARATH (Q7XJK5), AGL92_ARATH (Q9C6V4), AGL93_ARATH (Q7X9H9), AGL97_ARATH (Q9C633), MAD15_ORYSJ (Q6Q9I2), MAD16_ORYSJ (Q944S9), MAD18_ORYSI (A2YNI2), MAD18_ORYSJ (Q0D4T4), MAD30_ORYSJ (Q655V4), MAD51_ORYSJ (Q9XJ61), MADS4_ORYSJ (Q40703), MAF5_ARATH (Q683D7), MIG1_PYRO7 (G4MWZ7), MIG1_PYROR (A9YDN6), MTF1_PEA(O65874), PHE1_ARATH (O80805), PHE2_ARATH (Q7XJK8), SRFD_DICDI (Q54QY7)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
AP32_ASAEU (Q9LLA7) |
| PDB [Detailed view] |
19 PDB
1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57; 5F28; 6BYY; 6BZ1; 6C9L; 6WC2; 6WC5; 7X1N; 7XUZ » more |