Entry: PS00350

General information about the entry

Entry name [info] MADS_BOX_1
Accession [info] PS00350
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); APR-2006 (DATA UPDATE); DEC-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00302

Name and characterization of the entry

Description [info] MADS-box domain signature.
Pattern [info]
[RGS]-x-[RKS]-x(5)-[IL]-x-[DNGSK]-x(3)-[KR]-x(2)-T-[FY]-x-[RK](3)-x(2)-
[LIVM]-x-[KE]-K-[AT]-x-[EQ]-[LIVM]-[STA]-x-L-x(4)-[LIVM]-x-[LIVM]-
[LIVMT]-[LIVM]-x(6)-[LIVMFC]-x(2)-[FYLS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_01 which contains 550'299 sequence entries.


Total number of hits 147 in 147 different sequences
Number of true positive hits 147 in 147 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 25
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.47 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
147 sequences

1AP1_BRAOT  (Q96355), 2AP1_BRAOT  (Q96356), 3AP1_BRAOL  (Q39371), 
AG104_ARATH (Q9LM46), AGL11_ARATH (Q38836), AGL12_ARATH (Q38841), 
AGL13_ARATH (Q38837), AGL14_ARATH (Q38838), AGL15_ARATH (Q38847), 
AGL15_BRANA (Q39295), AGL16_ARATH (A2RVQ5), AGL17_ARATH (Q38840), 
AGL18_ARATH (Q9M2K8), AGL19_ARATH (O82743), AGL1_ARATH  (P29381), 
AGL21_ARATH (Q9SZJ6), AGL24_ARATH (O82794), AGL31_ARATH (Q9FPN7), 
AGL3_ARATH  (P29383), AGL5_ARATH  (P29385), AGL66_ARATH (Q1PFC2), 
AGL6_ARATH  (P29386), AGL8_ARATH  (Q38876), AGL8_SINAL  (Q41274), 
AGL8_SOLCO  (O22328), AGL8_SOLLC  (Q40170), AGL8_SOLTU  (Q42429), 
AGL9_ARADE  (Q38694), AGL9_PETHY  (Q03489), AGL9_SINAL  (O04067), 
AGL9_SOLLC  (Q42464), AG_ARATH    (P17839), AG_BRANA    (Q01540), 
AG_PANGI    (Q40872), AG_PETHY    (Q40885), AG_SOLLC    (Q40168), 
AG_TOBAC    (Q43585), ANR1_ARATH  (Q9SI38), AP1A_BRAOA  (B4YPW6), 
AP1A_BRAOB  (Q8GTF5), AP1C_BRAOA  (B4YPV4), AP1C_BRAOB  (Q8GTF4), 
AP1_ARALL   (D7KWY6), AP1_ARATH   (P35631), AP1_BRARP   (P0DI14), 
AP1_CITSI   (A2IB53), AP1_SINAL   (Q41276), AP3_ARATH   (P35632), 
ARGR1_YEAST (P07249), CALA_BRAOB  (Q6R4R9), CALB_BRAOB  (Q6R4R8), 
CALC_BRAOB  (Q6R4R7), CALD_BRAOB  (Q6R4R6), CAL_ARALL   (D7KQR8), 
CAL_ARATH   (Q39081), CAL_BRAOT   (Q39375), CAL_BRARC   (Q6R4S6), 
CAL_BRARP   (Q9SBK9), CAL_BRARR   (Q6R4S3), CMB1_DIACA  (Q39685), 
CMB2_DIACA  (Q42498), DEF21_ANTMA (Q8RVL4), DEFA_ANTMA  (P23706), 
FBP1_PETHY  (Q03488), FBP24_PETHY (Q9ATE5), FLC_ARATH   (Q9S7Q7), 
GGM13_GNEGN (Q9XGJ4), GLOB_ANTMA  (Q03378), GLOB_TOBAC  (Q03416), 
JOIN_SOLLC  (Q9FUY6), M17_MAIZE   (Q8VWM8), MAD13_ORYSJ (Q2QW53), 
MAD14_ORYSI (P0C5B1), MAD14_ORYSJ (Q10CQ1), MAD17_ORYSJ (Q7XUN2), 
MAD21_ORYSJ (Q8RU31), MAD22_ORYSJ (Q9XJ66), MAD23_ORYSJ (Q6VAM4), 
MAD25_ORYSJ (Q84NC5), MAD26_ORYSI (A2YQK9), MAD26_ORYSJ (Q0J8G8), 
MAD27_ORYSJ (Q6EP49), MAD29_ORYSJ (Q6H711), MAD31_ORYSJ (Q84NC2), 
MAD32_ORYSJ (Q8S151), MAD33_ORYSJ (Q2QW55), MAD34_ORYSJ (Q6Q9H6), 
MAD47_ORYSJ (Q5K4R0), MAD50_ORYSJ (Q9XJ60), MAD55_ORYSJ (Q69TG5), 
MAD56_ORYSI (A2Z9Q7), MAD56_ORYSJ (P0C5B2), MAD57_ORYSJ (Q6Z6W2), 
MAD58_ORYSJ (Q2V0P1), MADS1_ORYSI (A2XDY1), MADS1_ORYSJ (Q10PZ9), 
MADS1_PETHY (Q07472), MADS2_ORYSJ (Q40702), MADS2_PETHY (Q07474), 
MADS3_ORYSJ (Q40704), MADS5_ORYSI (A2Y9P0), MADS5_ORYSJ (Q0DEB8), 
MADS6_ORYSJ (Q6EU39), MADS7_ORYSI (P0C5B0), MADS7_ORYSJ (Q0J466), 
MADS8_ORYSJ (Q9SAR1), MBX1_SCHPO  (O42954), MCM1_YEAST  (P11746), 
MEF2A_BOVIN (A2VDZ3), MEF2A_CHICK (Q9W6U8), MEF2A_HUMAN (Q02078), 
MEF2A_MOUSE (Q60929), MEF2A_PIG   (A2ICN5), MEF2A_PONAB (Q5REW7), 
MEF2A_RAT   (Q2MJT0), MEF2A_XENLA (Q03414), MEF2B_HUMAN (Q02080), 
MEF2B_MOUSE (O55087), MEF2C_BOVIN (Q2KIA0), MEF2C_HUMAN (Q06413), 
MEF2C_MOUSE (Q8CFN5), MEF2C_PIG   (A4UTP7), MEF2C_PONAB (Q5R444), 
MEF2D_HUMAN (Q14814), MEF2D_MOUSE (Q63943), MEF2D_RAT   (O89038), 
MEF2D_XENLA (Q03413), MEF2_DROME  (P40791), PIST_ARATH  (P48007), 
PMAP1_SCHPO (P78926), PVG4_SCHPO  (Q9HGP0), RLM1_YEAST  (Q12224), 
SEP1_ARATH  (P29382), SEP2_ARATH  (P29384), SEP3_ARATH  (O22456), 
SMP1_YEAST  (P38128), SOC1_ARATH  (O64645), SRFA_DICDI  (Q54TY7), 
SRFB_DICDI  (Q54RY6), SRFC_DICDI  (Q55F37), SRF_CHICK   (Q90718), 
SRF_DROME   (Q24535), SRF_HUMAN   (P11831), SRF_MOUSE   (Q9JM73), 
SRF_XENLA   (P23790), SVP_ARATH   (Q9FVC1), TT16_ARATH  (Q8RYD9)
» more

UniProtKB/Swiss-Prot
False negative sequences
25 sequences

AGL23_ARATH (O80807), AGL27_ARATH (Q9AT76), AGL28_ARATH (Q9LMM8), 
AGL29_ARATH (O64703), AGL30_ARATH (Q1PFA4), AGL36_ARATH (Q7XJK6), 
AGL61_ARATH (Q4PSU4), AGL62_ARATH (Q9FKK2), AGL80_ARATH (Q9FJK3), 
AGL86_ARATH (Q9C6V3), AGL90_ARATH (Q7XJK5), AGL92_ARATH (Q9C6V4), 
AGL93_ARATH (Q7X9H9), AGL97_ARATH (Q9C633), MAD15_ORYSJ (Q6Q9I2), 
MAD16_ORYSJ (Q944S9), MAD18_ORYSI (A2YNI2), MAD18_ORYSJ (Q0D4T4), 
MAD30_ORYSJ (Q655V4), MADS4_ORYSJ (Q40703), MAF5_ARATH  (Q683D7), 
MTF1_PEA    (O65874), PHE1_ARATH  (O80805), PHE2_ARATH  (Q7XJK8), 
SRFD_DICDI  (Q54QY7)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

AP32_ASAEU  (Q9LLA7)

		
PDB
[Detailed view]
11 PDB

1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57

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