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| Entry: PS00350 |
| General information about the entry | |
|---|---|
| Entry name | MADS_BOX_1 |
| Accession number | PS00350 |
| Entry type | PATTERN |
| Date | NOV-1990 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE). |
| PROSITE Documentation | PDOC00302 |
| Name and characterization of the entry | |
| Description | MADS-box domain signature. |
| Pattern | [RGS]-x-[RKS]-x(5)-[IL]-x-[DNGSK]-x(3)-[KR]-x(2)-T-[FY]-x-[RK](3)-x(2)- [LIVM]-x-[KE]-K-[AT]-x-[EQ]-[LIVM]-[STA]-x-L-x(4)-[LIVM]-x-[LIVM]- [LIVMT]-[LIVM]-x(6)-[LIVMFC]-x(2)-[FYLS]. |
| Numerical results | |
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| Comments | |
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| Cross-references | |
| UniProtKB/Swiss-Prot | True positive hits:1AP1_BRAOT (Q96355), 2AP1_BRAOT (Q96356), 3AP1_BRAOL (Q39371), AGL11_ARATH (Q38836), AGL12_ARATH (Q38841), AGL13_ARATH (Q38837), AGL14_ARATH (Q38838), AGL15_ARATH (Q38847), AGL15_BRANA (Q39295), AGL16_ARATH (A2RVQ5), AGL17_ARATH (Q38840), AGL18_ARATH (Q9M2K8), AGL19_ARATH (O82743), AGL1_ARATH (P29381), AGL21_ARATH (Q9SZJ6), AGL24_ARATH (O82794), AGL31_ARATH (Q9FPN7), AGL3_ARATH (P29383), AGL5_ARATH (P29385), AGL6_ARATH (P29386), AGL8_ARATH (Q38876), AGL8_SINAL (Q41274), AGL8_SOLCO (O22328), AGL8_SOLLC (Q40170), AGL8_SOLTU (Q42429), AGL9_ARADE (Q38694), AGL9_PETHY (Q03489), AGL9_SINAL (O04067), AGL9_SOLLC (Q42464), AG_ARATH (P17839), AG_BRANA (Q01540), AG_PANGI (Q40872), AG_PETHY (Q40885), AG_SOLLC (Q40168), AG_TOBAC (Q43585), ANR1_ARATH (Q9SI38), AP1A_BRAOA (B4YPW6), AP1A_BRAOB (Q8GTF5), AP1C_BRAOA (B4YPV4), AP1C_BRAOB (Q8GTF4), AP1_ARALL (D7KWY6), AP1_ARATH (P35631), AP1_BRARP (P0DI14), AP1_CITSI (A2IB53), AP1_SINAL (Q41276), AP3_ARATH (P35632), ARGR1_YEAST (P07249), CALA_BRAOB (Q6R4R9), CALB_BRAOB (Q6R4R8), CALC_BRAOB (Q6R4R7), CALD_BRAOB (Q6R4R6), CAL_ARALL (D7KQR8), CAL_ARATH (Q39081), CAL_BRAOT (Q39375), CAL_BRARA (Q6R4S3), CAL_BRARC (Q6R4S6), CAL_BRARP (Q9SBK9), CMB1_DIACA (Q39685), CMB2_DIACA (Q42498), DEF21_ANTMA (Q8RVL4), DEFA_ANTMA (P23706), FBP1_PETHY (Q03488), FBP24_PETHY (Q9ATE5), FLC_ARATH (Q9S7Q7), GGM13_GNEGN (Q9XGJ4), GLOB_ANTMA (Q03378), GLOB_TOBAC (Q03416), JOIN_SOLLC (Q9FUY6), M17_MAIZE (Q8VWM8), MAD13_ORYSJ (Q2QW53), MAD14_ORYSI (P0C5B1), MAD14_ORYSJ (Q10CQ1), MAD17_ORYSJ (Q7XUN2), MAD21_ORYSJ (Q8RU31), MAD22_ORYSJ (Q9XJ66), MAD23_ORYSJ (Q6VAM4), MAD25_ORYSJ (Q84NC5), MAD26_ORYSI (A2YQK9), MAD26_ORYSJ (Q0J8G8), MAD27_ORYSJ (Q6EP49), MAD29_ORYSJ (Q6H711), MAD31_ORYSJ (Q84NC2), MAD32_ORYSJ (Q8S151), MAD33_ORYSJ (Q2QW55), MAD34_ORYSJ (Q6Q9H6), MAD47_ORYSJ (Q5K4R0), MAD50_ORYSJ (Q9XJ60), MAD55_ORYSJ (Q69TG5), MAD56_ORYSI (A2Z9Q7), MAD56_ORYSJ (P0C5B2), MAD57_ORYSJ (Q6Z6W2), MAD58_ORYSJ (Q2V0P1), MADS1_ORYSI (A2XDY1), MADS1_ORYSJ (Q10PZ9), MADS1_PETHY (Q07472), MADS2_ORYSJ (Q40702), MADS2_PETHY (Q07474), MADS3_ORYSJ (Q40704), MADS5_ORYSI (A2Y9P0), MADS5_ORYSJ (Q0DEB8), MADS6_ORYSJ (Q6EU39), MADS7_ORYSI (P0C5B0), MADS7_ORYSJ (Q0J466), MADS8_ORYSJ (Q9SAR1), MAP1_SCHPO (P78926), MBX1_SCHPO (O42954), MCM1_YEAST (P11746), MEF2A_BOVIN (A2VDZ3), MEF2A_CHICK (Q9W6U8), MEF2A_HUMAN (Q02078), MEF2A_MOUSE (Q60929), MEF2A_PIG (A2ICN5), MEF2A_PONAB (Q5REW7), MEF2A_RAT (Q2MJT0), MEF2A_XENLA (Q03414), MEF2B_HUMAN (Q02080), MEF2B_MOUSE (O55087), MEF2C_BOVIN (Q2KIA0), MEF2C_HUMAN (Q06413), MEF2C_MOUSE (Q8CFN5), MEF2C_PIG (A4UTP7), MEF2C_PONAB (Q5R444), MEF2D_HUMAN (Q14814), MEF2D_MOUSE (Q63943), MEF2D_RAT (O89038), MEF2D_XENLA (Q03413), MEF2_DROME (P40791), PIST_ARATH (P48007), PVG4_SCHPO (Q9HGP0), RLM1_YEAST (Q12224), SEP1_ARATH (P29382), SEP2_ARATH (P29384), SEP3_ARATH (O22456), SMP1_YEAST (P38128), SOC1_ARATH (O64645), SRFA_DICDI (Q54TY7), SRFB_DICDI (Q54RY6), SRFC_DICDI (Q55F37), SRF_CHICK (Q90718), SRF_DROME (Q24535), SRF_HUMAN (P11831), SRF_MOUSE (Q9JM73), SRF_XENLA (P23790), SVP_ARATH (Q9FVC1), TT16_ARATH (Q8RYD9)False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): AGL27_ARATH (Q9AT76), AGL36_ARATH (Q7XJK6), AGL61_ARATH (Q4PSU4), AGL62_ARATH (Q9FKK2), AGL80_ARATH (Q9FJK3), AGL86_ARATH (Q9C6V3), AGL90_ARATH (Q7XJK5), AGL92_ARATH (Q9C6V4), AGL93_ARATH (Q7X9H9), AGL97_ARATH (Q9C633), MAD15_ORYSJ (Q6Q9I2), MAD16_ORYSJ (Q944S9), MAD18_ORYSI (A2YNI2), MAD18_ORYSJ (Q0D4T4), MAD30_ORYSJ (Q655V4), MADS4_ORYSJ (Q40703), MTF1_PEA (O65874), PHE1_ARATH (O80805), PHE2_ARATH (Q7XJK8), SRFD_DICDI (Q54QY7)`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences): AP32_ASAEU (Q9LLA7)Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view]
[Clustal format, color]
[Clustal format, plain text]
[Fasta format]
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| PDB [Detailed view] |
1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57; |
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