Entry: PS00350

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General information about the entry

Entry name [info] MADS_BOX_1
Accession [info] PS00350
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); APR-2006 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00302

Name and characterization of the entry

Description [info] MADS-box domain signature.
Pattern [info]
[RGS]-x-[RKS]-x(5)-[IL]-x-[DNGSK]-x(3)-[KR]-x(2)-T-[FY]-x-[RK](3)-x(2)-
[LIVM]-x-[KE]-K-[AT]-x-[EQ]-[LIVM]-[STA]-x-L-x(4)-[LIVM]-x-[LIVM]-
[LIVMT]-[LIVM]-x(6)-[LIVMFC]-x(2)-[FYLS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 145 in 145 different sequences
Number of true positive hits 145 in 145 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 21
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.35 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
145 sequences

1AP1_BRAOT  (Q96355), 2AP1_BRAOT  (Q96356), 3AP1_BRAOL  (Q39371), 
AGL11_ARATH (Q38836), AGL12_ARATH (Q38841), AGL13_ARATH (Q38837), 
AGL14_ARATH (Q38838), AGL15_ARATH (Q38847), AGL15_BRANA (Q39295), 
AGL16_ARATH (A2RVQ5), AGL17_ARATH (Q38840), AGL18_ARATH (Q9M2K8), 
AGL19_ARATH (O82743), AGL1_ARATH  (P29381), AGL21_ARATH (Q9SZJ6), 
AGL24_ARATH (O82794), AGL31_ARATH (Q9FPN7), AGL3_ARATH  (P29383), 
AGL5_ARATH  (P29385), AGL6_ARATH  (P29386), AGL8_ARATH  (Q38876), 
AGL8_SINAL  (Q41274), AGL8_SOLCO  (O22328), AGL8_SOLLC  (Q40170), 
AGL8_SOLTU  (Q42429), AGL9_ARADE  (Q38694), AGL9_PETHY  (Q03489), 
AGL9_SINAL  (O04067), AGL9_SOLLC  (Q42464), AG_ARATH    (P17839), 
AG_BRANA    (Q01540), AG_PANGI    (Q40872), AG_PETHY    (Q40885), 
AG_SOLLC    (Q40168), AG_TOBAC    (Q43585), ANR1_ARATH  (Q9SI38), 
AP1A_BRAOA  (B4YPW6), AP1A_BRAOB  (Q8GTF5), AP1C_BRAOA  (B4YPV4), 
AP1C_BRAOB  (Q8GTF4), AP1_ARALL   (D7KWY6), AP1_ARATH   (P35631), 
AP1_BRARP   (P0DI14), AP1_CITSI   (A2IB53), AP1_SINAL   (Q41276), 
AP3_ARATH   (P35632), ARGR1_YEAST (P07249), CALA_BRAOB  (Q6R4R9), 
CALB_BRAOB  (Q6R4R8), CALC_BRAOB  (Q6R4R7), CALD_BRAOB  (Q6R4R6), 
CAL_ARALL   (D7KQR8), CAL_ARATH   (Q39081), CAL_BRAOT   (Q39375), 
CAL_BRARC   (Q6R4S6), CAL_BRARP   (Q9SBK9), CAL_BRARR   (Q6R4S3), 
CMB1_DIACA  (Q39685), CMB2_DIACA  (Q42498), DEF21_ANTMA (Q8RVL4), 
DEFA_ANTMA  (P23706), FBP1_PETHY  (Q03488), FBP24_PETHY (Q9ATE5), 
FLC_ARATH   (Q9S7Q7), GGM13_GNEGN (Q9XGJ4), GLOB_ANTMA  (Q03378), 
GLOB_TOBAC  (Q03416), JOIN_SOLLC  (Q9FUY6), M17_MAIZE   (Q8VWM8), 
MAD13_ORYSJ (Q2QW53), MAD14_ORYSI (P0C5B1), MAD14_ORYSJ (Q10CQ1), 
MAD17_ORYSJ (Q7XUN2), MAD21_ORYSJ (Q8RU31), MAD22_ORYSJ (Q9XJ66), 
MAD23_ORYSJ (Q6VAM4), MAD25_ORYSJ (Q84NC5), MAD26_ORYSI (A2YQK9), 
MAD26_ORYSJ (Q0J8G8), MAD27_ORYSJ (Q6EP49), MAD29_ORYSJ (Q6H711), 
MAD31_ORYSJ (Q84NC2), MAD32_ORYSJ (Q8S151), MAD33_ORYSJ (Q2QW55), 
MAD34_ORYSJ (Q6Q9H6), MAD47_ORYSJ (Q5K4R0), MAD50_ORYSJ (Q9XJ60), 
MAD55_ORYSJ (Q69TG5), MAD56_ORYSI (A2Z9Q7), MAD56_ORYSJ (P0C5B2), 
MAD57_ORYSJ (Q6Z6W2), MAD58_ORYSJ (Q2V0P1), MADS1_ORYSI (A2XDY1), 
MADS1_ORYSJ (Q10PZ9), MADS1_PETHY (Q07472), MADS2_ORYSJ (Q40702), 
MADS2_PETHY (Q07474), MADS3_ORYSJ (Q40704), MADS5_ORYSI (A2Y9P0), 
MADS5_ORYSJ (Q0DEB8), MADS6_ORYSJ (Q6EU39), MADS7_ORYSI (P0C5B0), 
MADS7_ORYSJ (Q0J466), MADS8_ORYSJ (Q9SAR1), MBX1_SCHPO  (O42954), 
MCM1_YEAST  (P11746), MEF2A_BOVIN (A2VDZ3), MEF2A_CHICK (Q9W6U8), 
MEF2A_HUMAN (Q02078), MEF2A_MOUSE (Q60929), MEF2A_PIG   (A2ICN5), 
MEF2A_PONAB (Q5REW7), MEF2A_RAT   (Q2MJT0), MEF2A_XENLA (Q03414), 
MEF2B_HUMAN (Q02080), MEF2B_MOUSE (O55087), MEF2C_BOVIN (Q2KIA0), 
MEF2C_HUMAN (Q06413), MEF2C_MOUSE (Q8CFN5), MEF2C_PIG   (A4UTP7), 
MEF2C_PONAB (Q5R444), MEF2D_HUMAN (Q14814), MEF2D_MOUSE (Q63943), 
MEF2D_RAT   (O89038), MEF2D_XENLA (Q03413), MEF2_DROME  (P40791), 
PIST_ARATH  (P48007), PMAP1_SCHPO (P78926), PVG4_SCHPO  (Q9HGP0), 
RLM1_YEAST  (Q12224), SEP1_ARATH  (P29382), SEP2_ARATH  (P29384), 
SEP3_ARATH  (O22456), SMP1_YEAST  (P38128), SOC1_ARATH  (O64645), 
SRFA_DICDI  (Q54TY7), SRFB_DICDI  (Q54RY6), SRFC_DICDI  (Q55F37), 
SRF_CHICK   (Q90718), SRF_DROME   (Q24535), SRF_HUMAN   (P11831), 
SRF_MOUSE   (Q9JM73), SRF_XENLA   (P23790), SVP_ARATH   (Q9FVC1), 
TT16_ARATH  (Q8RYD9)
» More

UniProtKB/Swiss-Prot
False negative sequences
21 sequences

AGL27_ARATH (Q9AT76), AGL36_ARATH (Q7XJK6), AGL61_ARATH (Q4PSU4), 
AGL62_ARATH (Q9FKK2), AGL80_ARATH (Q9FJK3), AGL86_ARATH (Q9C6V3), 
AGL90_ARATH (Q7XJK5), AGL92_ARATH (Q9C6V4), AGL93_ARATH (Q7X9H9), 
AGL97_ARATH (Q9C633), MAD15_ORYSJ (Q6Q9I2), MAD16_ORYSJ (Q944S9), 
MAD18_ORYSI (A2YNI2), MAD18_ORYSJ (Q0D4T4), MAD30_ORYSJ (Q655V4), 
MADS4_ORYSJ (Q40703), MAF5_ARATH  (Q683D7), MTF1_PEA    (O65874), 
PHE1_ARATH  (O80805), PHE2_ARATH  (Q7XJK8), SRFD_DICDI  (Q54QY7)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

AP32_ASAEU  (Q9LLA7)

		
PDB
[Detailed view]
11 PDB

1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57

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