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Entry: PS00351
General information about the entry
Entry nameTFIID
Accession numberPS00351
Entry typePATTERN
DateNOV-1990 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00303
Name and characterization of the entry
DescriptionTranscription factor TFIID repeat signature.
PatternY-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x- [STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 168 hits in 97 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 168 hits in 97 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 96.00 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
TBP1_ARATH  (P28147), TBP1_ENTHI  (P52653), TBP1_HALVD  (D4GZA2), 
TBP1_MAIZE  (P50158), TBP1_METAC  (Q8TI26), TBP1_METMA  (Q8PY37), 
TBP1_WHEAT  (P26356), TBP2_ARATH  (P28148), TBP2_ENTHI  (C4M7H7), 
TBP2_HALVD  (D4H071), TBP2_MAIZE  (P50159), TBP2_METAC  (Q8TU94), 
TBP2_METMA  (Q8PY36), TBP2_ORYSJ  (Q8W0W4), TBP2_WHEAT  (Q02879), 
TBP3_METAC  (Q8TTZ7), TBP3_METMA  (Q8PUZ4), TBPB_HALSA  (Q48325), 
TBPE_HALSA  (Q9HN56), TBPF_HALSA  (Q9HHE9), TBPL1_ENTHI (A7UFC2), 
TBPL2_DANRE (Q1JPY4), TBPL2_HUMAN (Q6SJ96), TBPL2_MOUSE (Q6SJ95), 
TBPL2_PANTR (A6H907), TBPL2_RAT   (A6H909), TBPL2_TAKRU (Q6SJ94), 
TBPL2_XENLA (Q5UE94), TBPL2_XENTR (Q28DH2), TBP_ACACA   (P26354), 
TBP_ACECL   (P46272), TBP_AERPE   (Q9YAT1), TBP_ARCFU   (O29874), 
TBP_ARTSF   (O17488), TBP_BOMMO   (O45211), TBP_BOVIN   (Q2HJ52), 
TBP_CAEEL   (P32085), TBP_CANAL   (O43133), TBP_CHICK   (O13270), 
TBP_DANRE   (Q7SXL3), TBP_DICDI   (P26355), TBP_DROME   (P20227), 
TBP_DROVI   (Q9NHP5), TBP_EMENI   (Q12731), TBP_HALMA   (Q5V470), 
TBP_HUMAN   (P20226), TBP_MACFA   (Q4R4F5), TBP_MESAU   (P53360), 
TBP_MESCR   (P48511), TBP_META3   (A6UTF6), TBP_METJA   (Q57930), 
TBP_METKA   (Q8TX38), TBP_METM6   (A9A840), TBP_METM7   (A6VIP7), 
TBP_METMP   (Q6M0L3), TBP_METS3   (A5UL47), TBP_METST   (Q2NFC3), 
TBP_METTH   (O27664), TBP_METTL   (Q9P9I9), TBP_METTP   (A0B5H8), 
TBP_METVS   (A6URP5), TBP_MOUSE   (P29037), TBP_NATPD   (Q3ITB1), 
TBP_PICTO   (Q6L1R1), TBP_PLAFA   (P32086), TBP_PROFL   (Q92117), 
TBP_PYRAB   (Q9V024), TBP_PYRAE   (Q8ZVR0), TBP_PYRCJ   (A3MV36), 
TBP_PYRFU   (P62000), TBP_PYRHO   (O58737), TBP_PYRIL   (A1RSQ1), 
TBP_PYRKO   (Q52366), TBP_PYROC   (P58177), TBP_PYRWO   (P62001), 
TBP_SCHPO   (P17871), TBP_SOLTU   (P26357), TBP_SOYBN   (Q42808), 
TBP_SPOFR   (P53361), TBP_STRPU   (P91809), TBP_SULAC   (Q9UWN7), 
TBP_SULSH   (Q55031), TBP_SULSO   (P58178), TBP_SULTO   (Q971V3), 
TBP_TETTH   (Q27850), TBP_THEAC   (Q9HLM8), TBP_THECE   (Q56253), 
TBP_THENV   (B1Y949), TBP_THEON   (B6YXI6), TBP_THESM   (C6A0R1), 
TBP_THEVO   (Q978J5), TBP_TOBAC   (P93348), TBP_TRIGA   (Q92146), 
TBP_XENLA   (P27633), TBP_XENTR   (Q28GG8), TBP_YEAST   (P13393), 
TRF_DROME   (Q27896)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TBPL1_BOVIN (Q32LB1), TBPL1_DANRE (Q5U385), TBPL1_HUMAN (P62380), 
TBPL1_MACFA (Q4R848), TBPL1_MOUSE (P62340), TBPL1_PONAB (Q5R7U8), 
TBPL1_XENTR (Q6DIY4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1AIS; 1C9B; 1CDW; 1D3U; 1JFI; 1MP9; 1NGM; 1NH2; 1NVP; 1PCZ; 1QN3; 1QN4; 1QN5; 1QN6; 1QN7; 1QN8; 1QN9; 1QNA; 1QNB; 1QNC; 1QNE; 1RM1; 1TBA; 1TBP; 1TGH; 1VOK; 1VOL; 1VTL; 1VTO; 1YTB; 1YTF; 2Z8U;

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