Entry: PS00352

General information about the entry

Entry name [info] COLD_SHOCK
Accession [info] PS00352
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00304

Name and characterization of the entry

Description [info] 'Cold-shock' domain signature.
Pattern [info]
[FYKH]-G-[FL]-[IL]-x(6,7)-[DER]-[LIVM]-[FQ]-x-H-x-[STKR]-x-[LIVMFYC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 175 in 166 different sequences
Number of true positive hits 174 in 165 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 0
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 99.43 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
165 sequences

CAPA_PSEFR  (P72188    ), CAPB_PSEFR  (P0A106    ), CAPB_PSESM  (P0A105    ), 
CHSP1_HUMAN (Q9Y2V2    ), CHSP1_MOUSE (Q9CR86    ), CHSP1_RAT   (Q9WU49    ), 
CSDC2_HUMAN (Q9Y534    ), CSDC2_MOUSE (Q91YQ3    ), CSDC2_RAT   (Q63430    ), 
CSDE1_HUMAN (O75534    ), CSDE1_MOUSE (Q91W50    ), CSDE1_RAT   (P18395    ), 
CSP1_ARATH  (O65639    ), CSP1_LACPL  (P71478    ), CSP2_ARATH  (Q41188    ), 
CSP2_LACPL  (P96349    ), CSP3_ARATH  (Q94C69    ), CSP4_ARATH  (Q38896    ), 
CSP7_STRC2  (Q01761    ), CSPA_AERHY  (Q44078    ), CSPA_AERSA  (Q44317    ), 
CSPA_BACAN  (Q81TW8    ), CSPA_BACCE  (Q45096    ), CSPA_BACCR  (Q81GQ6    ), 
CSPA_BORBR  (P0A353    ), CSPA_BORPA  (P0A354    ), CSPA_BORPE  (P0A352    ), 
CSPA_CITFR  (Q46051    ), CSPA_ECO57  (P0A9Y1    ), CSPA_ECOL6  (P0A9Y0    ), 
CSPA_ECOLI  (P0A9X9    ), CSPA_ENTAK  (Q46664    ), CSPA_KLEPN  (Q48493    ), 
CSPA_LISIN  (P0A356    ), CSPA_LISMO  (P0A355    ), CSPA_MICLC  (O30875    ), 
CSPA_MYCBO  (P63849    ), CSPA_MYCS2  (A0R5E1    ), CSPA_MYCTO  (P9WP74    ), 
CSPA_MYCTU  (P9WP75    ), CSPA_PHOLD  (Q51929    ), CSPA_PHOPO  (Q52287    ), 
CSPA_PSEAE  (P95459    ), CSPA_RHIME  (Q9Z3S6    ), CSPA_RICBR  (Q1RHK6    ), 
CSPA_RICCN  (Q92GV1    ), CSPA_RICFE  (Q4UMU5    ), CSPA_RICPR  (Q9ZCP9    ), 
CSPA_RICTY  (Q68W69    ), CSPA_SALEN  (P0A9Y5    ), CSPA_SALTI  (P0A9Y3    ), 
CSPA_SALTY  (P0A9Y2    ), CSPA_SALVI  (Q56178    ), CSPA_SHEVD  (Q9S1B7    ), 
CSPA_SHIBO  (Q53816    ), CSPA_SHIFL  (P0A9Y4    ), CSPA_STAA3  (Q2FH36    ), 
CSPA_STAA8  (Q2FYN2    ), CSPA_STAAB  (Q2YY16    ), CSPA_STAAC  (Q5HG18    ), 
CSPA_STAAM  (Q7A2R8    ), CSPA_STAAN  (Q7A5P3    ), CSPA_STAAR  (Q6GH06    ), 
CSPA_STAAS  (Q6G9F9    ), CSPA_STAAW  (Q7A0X3    ), CSPA_STAEQ  (Q5HPE0    ), 
CSPA_STAES  (Q8CP90    ), CSPA_STAHJ  (Q4L6A7    ), CSPA_STAS1  (Q49XK3    ), 
CSPA_STIAD  (P72366    ), CSPA_STRDY  (Q53984    ), CSPA_STRP1  (P0C0F1    ), 
CSPA_STRP3  (P0DA48    ), CSPA_STRP6  (Q5X9L4    ), CSPA_STRP8  (P0A361    ), 
CSPA_STRPQ  (P0DA49    ), CSPA_STRPY  (P0C0F0    ), CSPA_VIBCH  (Q9KN00    ), 
CSPA_YEREN  (Q56922    ), CSPB_BACCE  (Q45097    ), CSPB_BACCL  (P41016    ), 
CSPB_BACSU  (P32081    ), CSPB_ECOLI  (P36995    ), CSPB_GEOSE  (P42016    ), 
CSPB_LISIN  (P0A358    ), CSPB_LISMO  (P0A357    ), CSPB_SPOGL  (P41018    ), 
CSPB_YEREN  (P0A363    ), CSPB_YERPE  (P0A362    ), CSPC_BACAN  (P62169    ), 
CSPC_BACCE  (P62170    ), CSPC_BACCR  (P62171    ), CSPC_BACSU  (P39158    ), 
CSPC_BUCAI  (P57407    ), CSPC_ECO57  (P0A9Y8    ), CSPC_ECOL6  (P0A9Y7    ), 
CSPC_ECOLI  (P0A9Y6    ), CSPC_ECOLW  (E0J500    ), CSPC_SALTI  (P0A9Z0    ), 
CSPC_SALTY  (P0A9Y9    ), CSPC_SHIFL  (Q83RI9    ), CSPD_BACAN  (Q81K90    ), 
CSPD_BACCE  (Q45099    ), CSPD_BACCR  (Q816H3    ), CSPD_BACSU  (P51777    ), 
CSPD_ECO57  (P0A970    ), CSPD_ECOL6  (P0A969    ), CSPD_ECOLI  (P0A968    ), 
CSPD_HAEIN  (P46449    ), CSPD_SHIFL  (P0A971    ), CSPD_VIBCH  (Q9KSW4    ), 
CSPE_BACAN  (Q81QK2    ), CSPE_BACCE  (Q45100    ), CSPE_BACCR  (Q81DK5    ), 
CSPE_BUCAI  (P63237    ), CSPE_BUCAP  (P63238    ), CSPE_BUCBP  (Q89A90    ), 
CSPE_ECO57  (P0A974    ), CSPE_ECOL6  (P0A973    ), CSPE_ECOLI  (P0A972    ), 
CSPE_ECOLW  (E0J1Q3    ), CSPE_SHIFL  (P0A975    ), CSPF_ECOL6  (P0A977    ), 
CSPF_ECOLI  (P0A976    ), CSPF_STRCO  (P48859    ), CSPG_ECO57  (P0A980    ), 
CSPG_ECOL6  (P0A979    ), CSPG_ECOLI  (P0A978    ), CSPG_SHEVD  (Q9S170    ), 
CSPG_SHIFL  (P0A981    ), CSPH_ECO57  (P0A984    ), CSPH_ECOL6  (P0A983    ), 
CSPH_ECOLI  (P0A982    ), CSPH_SALTI  (P0A1E0    ), CSPH_SALTY  (P0A1D9    ), 
CSPH_SHIFL  (P0A985    ), CSPI_ECOL6  (P0A987    ), CSPI_ECOLI  (P0A986    ), 
CSPJ_SALTI  (P58726    ), CSPJ_SALTS  (E1WGN1    ), CSPJ_SALTY  (P0CL01    ), 
CSP_AQUAE   (O67327    ), CSP_ARTGO   (P54584    ), CSP_THEMA   (O54310    ), 
GRP2_NICSY  (P27484    ), TAPA_PSEFR  (P72191    ), TAPB_PSEFR  (P72192    ), 
Y4CH_RHISN  (P55390    ), Y9705_DROME (Q9VVA0    ), YB3_XENLA   (Q00436    ), 
YBOX1_BOVIN (P67808    ), YBOX1_CHICK (Q06066    ), YBOX1_HUMAN (P67809    ), 
YBOX1_MOUSE (P62960    ), YBOX1_RABIT (Q28618    ), YBOX1_RAT   (P62961    ), 
YBOX1_XENLA (P21573    ), YBOX2_HUMAN (Q9Y2T7    ), YBOX2_MOUSE (Q9Z2C8    ), 
YBOX3_HUMAN (P16989    ), YBOX3_MOUSE (Q9JKB3    ), YBOX3_RAT   (Q62764    ), 
YBOXH_APLCA (P41824    ), YBX2A_XENLA (P21574    ), YBX2B_XENLA (P45441    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

CSDE1_CAVPO (P29174    ), CSPS_STRTR  (P81622    )

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

DSBB_BLOPB  (Q492M6    )

		
PDB
[Detailed view]
29 PDB

1C9O; 1CSP; 1CSQ; 1G6P; 1H95; 1HZ9; 1HZA; 1HZB; 1HZC; 1I5F; 1MJC; 1NMF; 1NMG; 1WFQ; 1X65; 2ES2; 2F52; 2HAX; 2I5L; 2I5M; 2L15; 2LXJ; 2LXK; 2YTX; 2YTY; 3AQQ; 3MEF; 3PF4; 3PF5
» more

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