Entry: PS00352

General information about the entry
Entry name COLD_SHOCK
Accession number PS00352
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00304
Name and characterization of the entry
Description'Cold-shock' domain signature.
Pattern [FYKH]-G-[FL]-[IL]-x(6,7)-[DER]-[LIVM]-[FQ]-x-H-x-[STKR]-x-[LIVMFYC].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 174 hits in 165 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 173 hits in 164 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 99.43 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 4
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CAPA_PSEFR  (P72188), CAPB_PSEFR  (P0A106), CAPB_PSESM  (P0A105), 
CHSP1_HUMAN (Q9Y2V2), CHSP1_MOUSE (Q9CR86), CHSP1_RAT   (Q9WU49), 
CSDC2_HUMAN (Q9Y534), CSDC2_MOUSE (Q91YQ3), CSDC2_RAT   (Q63430), 
CSDE1_HUMAN (O75534), CSDE1_MOUSE (Q91W50), CSDE1_RAT   (P18395), 
CSP1_ARATH  (O65639), CSP1_LACPL  (P71478), CSP2_ARATH  (Q41188), 
CSP2_LACPL  (P96349), CSP3_ARATH  (Q94C69), CSP4_ARATH  (Q38896), 
CSP7_STRC2  (Q01761), CSPA_AERHY  (Q44078), CSPA_AERSA  (Q44317), 
CSPA_BACAN  (Q81TW8), CSPA_BACCE  (Q45096), CSPA_BACCR  (Q81GQ6), 
CSPA_BORBR  (P0A353), CSPA_BORPA  (P0A354), CSPA_BORPE  (P0A352), 
CSPA_CITFR  (Q46051), CSPA_ECO57  (P0A9Y1), CSPA_ECOL6  (P0A9Y0), 
CSPA_ECOLI  (P0A9X9), CSPA_ENTAK  (Q46664), CSPA_KLEPN  (Q48493), 
CSPA_LISIN  (P0A356), CSPA_LISMO  (P0A355), CSPA_MICLC  (O30875), 
CSPA_MYCBO  (P63849), CSPA_MYCS2  (A0R5E1), CSPA_MYCTU  (P63848), 
CSPA_PHOMO  (Q51929), CSPA_PHOPO  (Q52287), CSPA_PSEAE  (P95459), 
CSPA_RHIME  (Q9Z3S6), CSPA_RICBR  (Q1RHK6), CSPA_RICCN  (Q92GV1), 
CSPA_RICFE  (Q4UMU5), CSPA_RICPR  (Q9ZCP9), CSPA_RICTY  (Q68W69), 
CSPA_SALEN  (P0A9Y5), CSPA_SALTI  (P0A9Y3), CSPA_SALTY  (P0A9Y2), 
CSPA_SALVI  (Q56178), CSPA_SHEVD  (Q9S1B7), CSPA_SHIBO  (Q53816), 
CSPA_SHIFL  (P0A9Y4), CSPA_STAA3  (Q2FH36), CSPA_STAA8  (Q2FYN2), 
CSPA_STAAB  (Q2YY16), CSPA_STAAC  (Q5HG18), CSPA_STAAM  (Q7A2R8), 
CSPA_STAAN  (Q7A5P3), CSPA_STAAR  (Q6GH06), CSPA_STAAS  (Q6G9F9), 
CSPA_STAAW  (Q7A0X3), CSPA_STAEQ  (Q5HPE0), CSPA_STAES  (Q8CP90), 
CSPA_STAHJ  (Q4L6A7), CSPA_STAS1  (Q49XK3), CSPA_STIAD  (P72366), 
CSPA_STRDY  (Q53984), CSPA_STRP1  (P0C0F1), CSPA_STRP3  (P0DA48), 
CSPA_STRP6  (Q5X9L4), CSPA_STRP8  (P0A361), CSPA_STRPQ  (P0DA49), 
CSPA_STRPY  (P0C0F0), CSPA_VIBCH  (Q9KN00), CSPA_YEREN  (Q56922), 
CSPB_BACCE  (Q45097), CSPB_BACCL  (P41016), CSPB_BACGO  (P41018), 
CSPB_BACSU  (P32081), CSPB_ECOLI  (P36995), CSPB_GEOSE  (P42016), 
CSPB_LISIN  (P0A358), CSPB_LISMO  (P0A357), CSPB_YEREN  (P0A363), 
CSPB_YERPE  (P0A362), CSPC_BACAN  (P62169), CSPC_BACCE  (P62170), 
CSPC_BACCR  (P62171), CSPC_BACSU  (P39158), CSPC_BUCAI  (P57407), 
CSPC_ECO57  (P0A9Y8), CSPC_ECOL6  (P0A9Y7), CSPC_ECOLI  (P0A9Y6), 
CSPC_ECOLW  (E0J500), CSPC_SALTI  (P0A9Z0), CSPC_SALTY  (P0A9Y9), 
CSPC_SHIFL  (Q83RI9), CSPD_BACAN  (Q81K90), CSPD_BACCE  (Q45099), 
CSPD_BACCR  (Q816H3), CSPD_BACSU  (P51777), CSPD_ECO57  (P0A970), 
CSPD_ECOL6  (P0A969), CSPD_ECOLI  (P0A968), CSPD_HAEIN  (P46449), 
CSPD_SHIFL  (P0A971), CSPD_VIBCH  (Q9KSW4), CSPE_BACAN  (Q81QK2), 
CSPE_BACCE  (Q45100), CSPE_BACCR  (Q81DK5), CSPE_BUCAI  (P63237), 
CSPE_BUCAP  (P63238), CSPE_BUCBP  (Q89A90), CSPE_ECO57  (P0A974), 
CSPE_ECOL6  (P0A973), CSPE_ECOLI  (P0A972), CSPE_ECOLW  (E0J1Q3), 
CSPE_SHIFL  (P0A975), CSPF_ECOL6  (P0A977), CSPF_ECOLI  (P0A976), 
CSPF_STRCO  (P48859), CSPG_ECO57  (P0A980), CSPG_ECOL6  (P0A979), 
CSPG_ECOLI  (P0A978), CSPG_SHEVD  (Q9S170), CSPG_SHIFL  (P0A981), 
CSPH_ECO57  (P0A984), CSPH_ECOL6  (P0A983), CSPH_ECOLI  (P0A982), 
CSPH_SALTI  (P0A1E0), CSPH_SALTY  (P0A1D9), CSPH_SHIFL  (P0A985), 
CSPI_ECOL6  (P0A987), CSPI_ECOLI  (P0A986), CSPJ_SALTI  (P58726), 
CSPJ_SALTS  (E1WGN1), CSPJ_SALTY  (P0CL01), CSP_AQUAE   (O67327), 
CSP_ARTGO   (P54584), CSP_THEMA   (O54310), GRP2_NICSY  (P27484), 
TAPA_PSEFR  (P72191), TAPB_PSEFR  (P72192), Y4CH_RHISN  (P55390), 
Y9705_DROME (Q9VVA0), YB3_XENLA   (Q00436), YBOX1_BOVIN (P67808), 
YBOX1_CHICK (Q06066), YBOX1_HUMAN (P67809), YBOX1_MOUSE (P62960), 
YBOX1_RABIT (Q28618), YBOX1_RAT   (P62961), YBOX1_XENLA (P21573), 
YBOX2_HUMAN (Q9Y2T7), YBOX2_MOUSE (Q9Z2C8), YBOX3_HUMAN (P16989), 
YBOX3_MOUSE (Q9JKB3), YBOX3_RAT   (Q62764), YBOXH_APLCA (P41824), 
YBX2A_XENLA (P21574), YBX2B_XENLA (P45441)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CSDE1_CAVPO (P29174), CSPS_STRTR  (P81622)
False positive hits (sequences which do not belong to the set under consideration):
DSBB_BLOPB  (Q492M6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1C9O; 1CSP; 1CSQ; 1G6P; 1H95; 1HZ9; 1HZA; 1HZB; 1HZC; 1I5F; 1MJC; 1NMF; 1NMG; 1WFQ; 1X65; 2ES2; 2F52; 2HAX; 2I5L; 2I5M; 2YTX; 2YTY; 3AQQ; 3MEF; 3PF4; 3PF5;

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View entry in raw text format (no links)
Direct ScanProsite submission


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