Entry: PS00352

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General information about the entry

Entry name [info] COLD_SHOCK
Accession [info] PS00352
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00304

Name and characterization of the entry

Description [info] 'Cold-shock' domain signature.
Pattern [info]
[FYKH]-G-[FL]-[IL]-x(6,7)-[DER]-[LIVM]-[FQ]-x-H-x-[STKR]-x-[LIVMFYC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 175 in 166 different sequences
Number of true positive hits 174 in 165 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 0
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 99.43 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
165 sequences

CAPA_PSEFR  (P72188), CAPB_PSEFR  (P0A106), CAPB_PSESM  (P0A105), 
CHSP1_HUMAN (Q9Y2V2), CHSP1_MOUSE (Q9CR86), CHSP1_RAT   (Q9WU49), 
CSDC2_HUMAN (Q9Y534), CSDC2_MOUSE (Q91YQ3), CSDC2_RAT   (Q63430), 
CSDE1_HUMAN (O75534), CSDE1_MOUSE (Q91W50), CSDE1_RAT   (P18395), 
CSP1_ARATH  (O65639), CSP1_LACPL  (P71478), CSP2_ARATH  (Q41188), 
CSP2_LACPL  (P96349), CSP3_ARATH  (Q94C69), CSP4_ARATH  (Q38896), 
CSP7_STRC2  (Q01761), CSPA_AERHY  (Q44078), CSPA_AERSA  (Q44317), 
CSPA_BACAN  (Q81TW8), CSPA_BACCE  (Q45096), CSPA_BACCR  (Q81GQ6), 
CSPA_BORBR  (P0A353), CSPA_BORPA  (P0A354), CSPA_BORPE  (P0A352), 
CSPA_CITFR  (Q46051), CSPA_ECO57  (P0A9Y1), CSPA_ECOL6  (P0A9Y0), 
CSPA_ECOLI  (P0A9X9), CSPA_ENTAK  (Q46664), CSPA_KLEPN  (Q48493), 
CSPA_LISIN  (P0A356), CSPA_LISMO  (P0A355), CSPA_MICLC  (O30875), 
CSPA_MYCBO  (P63849), CSPA_MYCS2  (A0R5E1), CSPA_MYCTO  (P9WP74), 
CSPA_MYCTU  (P9WP75), CSPA_PHOMO  (Q51929), CSPA_PHOPO  (Q52287), 
CSPA_PSEAE  (P95459), CSPA_RHIME  (Q9Z3S6), CSPA_RICBR  (Q1RHK6), 
CSPA_RICCN  (Q92GV1), CSPA_RICFE  (Q4UMU5), CSPA_RICPR  (Q9ZCP9), 
CSPA_RICTY  (Q68W69), CSPA_SALEN  (P0A9Y5), CSPA_SALTI  (P0A9Y3), 
CSPA_SALTY  (P0A9Y2), CSPA_SALVI  (Q56178), CSPA_SHEVD  (Q9S1B7), 
CSPA_SHIBO  (Q53816), CSPA_SHIFL  (P0A9Y4), CSPA_STAA3  (Q2FH36), 
CSPA_STAA8  (Q2FYN2), CSPA_STAAB  (Q2YY16), CSPA_STAAC  (Q5HG18), 
CSPA_STAAM  (Q7A2R8), CSPA_STAAN  (Q7A5P3), CSPA_STAAR  (Q6GH06), 
CSPA_STAAS  (Q6G9F9), CSPA_STAAW  (Q7A0X3), CSPA_STAEQ  (Q5HPE0), 
CSPA_STAES  (Q8CP90), CSPA_STAHJ  (Q4L6A7), CSPA_STAS1  (Q49XK3), 
CSPA_STIAD  (P72366), CSPA_STRDY  (Q53984), CSPA_STRP1  (P0C0F1), 
CSPA_STRP3  (P0DA48), CSPA_STRP6  (Q5X9L4), CSPA_STRP8  (P0A361), 
CSPA_STRPQ  (P0DA49), CSPA_STRPY  (P0C0F0), CSPA_VIBCH  (Q9KN00), 
CSPA_YEREN  (Q56922), CSPB_BACCE  (Q45097), CSPB_BACCL  (P41016), 
CSPB_BACSU  (P32081), CSPB_ECOLI  (P36995), CSPB_GEOSE  (P42016), 
CSPB_LISIN  (P0A358), CSPB_LISMO  (P0A357), CSPB_SPOGL  (P41018), 
CSPB_YEREN  (P0A363), CSPB_YERPE  (P0A362), CSPC_BACAN  (P62169), 
CSPC_BACCE  (P62170), CSPC_BACCR  (P62171), CSPC_BACSU  (P39158), 
CSPC_BUCAI  (P57407), CSPC_ECO57  (P0A9Y8), CSPC_ECOL6  (P0A9Y7), 
CSPC_ECOLI  (P0A9Y6), CSPC_ECOLW  (E0J500), CSPC_SALTI  (P0A9Z0), 
CSPC_SALTY  (P0A9Y9), CSPC_SHIFL  (Q83RI9), CSPD_BACAN  (Q81K90), 
CSPD_BACCE  (Q45099), CSPD_BACCR  (Q816H3), CSPD_BACSU  (P51777), 
CSPD_ECO57  (P0A970), CSPD_ECOL6  (P0A969), CSPD_ECOLI  (P0A968), 
CSPD_HAEIN  (P46449), CSPD_SHIFL  (P0A971), CSPD_VIBCH  (Q9KSW4), 
CSPE_BACAN  (Q81QK2), CSPE_BACCE  (Q45100), CSPE_BACCR  (Q81DK5), 
CSPE_BUCAI  (P63237), CSPE_BUCAP  (P63238), CSPE_BUCBP  (Q89A90), 
CSPE_ECO57  (P0A974), CSPE_ECOL6  (P0A973), CSPE_ECOLI  (P0A972), 
CSPE_ECOLW  (E0J1Q3), CSPE_SHIFL  (P0A975), CSPF_ECOL6  (P0A977), 
CSPF_ECOLI  (P0A976), CSPF_STRCO  (P48859), CSPG_ECO57  (P0A980), 
CSPG_ECOL6  (P0A979), CSPG_ECOLI  (P0A978), CSPG_SHEVD  (Q9S170), 
CSPG_SHIFL  (P0A981), CSPH_ECO57  (P0A984), CSPH_ECOL6  (P0A983), 
CSPH_ECOLI  (P0A982), CSPH_SALTI  (P0A1E0), CSPH_SALTY  (P0A1D9), 
CSPH_SHIFL  (P0A985), CSPI_ECOL6  (P0A987), CSPI_ECOLI  (P0A986), 
CSPJ_SALTI  (P58726), CSPJ_SALTS  (E1WGN1), CSPJ_SALTY  (P0CL01), 
CSP_AQUAE   (O67327), CSP_ARTGO   (P54584), CSP_THEMA   (O54310), 
GRP2_NICSY  (P27484), TAPA_PSEFR  (P72191), TAPB_PSEFR  (P72192), 
Y4CH_RHISN  (P55390), Y9705_DROME (Q9VVA0), YB3_XENLA   (Q00436), 
YBOX1_BOVIN (P67808), YBOX1_CHICK (Q06066), YBOX1_HUMAN (P67809), 
YBOX1_MOUSE (P62960), YBOX1_RABIT (Q28618), YBOX1_RAT   (P62961), 
YBOX1_XENLA (P21573), YBOX2_HUMAN (Q9Y2T7), YBOX2_MOUSE (Q9Z2C8), 
YBOX3_HUMAN (P16989), YBOX3_MOUSE (Q9JKB3), YBOX3_RAT   (Q62764), 
YBOXH_APLCA (P41824), YBX2A_XENLA (P21574), YBX2B_XENLA (P45441)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

CSDE1_CAVPO (P29174), CSPS_STRTR  (P81622)

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

DSBB_BLOPB  (Q492M6)

		
PDB
[Detailed view]
28 PDB

1C9O; 1CSP; 1CSQ; 1G6P; 1H95; 1HZ9; 1HZA; 1HZB; 1HZC; 1I5F; 1MJC; 1NMF; 1NMG; 1WFQ; 1X65; 2ES2; 2F52; 2HAX; 2I5L; 2I5M; 2LXJ; 2LXK; 2YTX; 2YTY; 3AQQ; 3MEF; 3PF4; 3PF5
» More

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