Entry: PS00353

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General information about the entry

Entry name [info] HMG_BOX_1
Accession [info] PS00353
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00305

Name and characterization of the entry

Description [info] HMG box A DNA-binding domain signature.
Pattern [info]
[FI]-S-[KR]-K-C-x-[EK]-R-W-K-T-[MV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 25 in 25 different sequences
Number of true positive hits 25 in 25 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 29
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 46.30 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
25 sequences

HMG2_DROME  (Q24537), HMGB1_BOVIN (P10103), HMGB1_CALJA (B0CM99), 
HMGB1_CALMO (B1MTB0), HMGB1_CANFA (Q6YKA4), HMGB1_CHICK (Q9YH06), 
HMGB1_CRIGR (P07156), HMGB1_HORSE (Q08IE6), HMGB1_HUMAN (P09429), 
HMGB1_MACFA (Q4R844), HMGB1_MOUSE (P63158), HMGB1_PAPAN (A9RA84), 
HMGB1_PIG   (P12682), HMGB1_RAT   (P63159), HMGB2_BOVIN (P40673), 
HMGB2_CHICK (P26584), HMGB2_HUMAN (P26583), HMGB2_MOUSE (P30681), 
HMGB2_PIG   (P17741), HMGB2_RAT   (P52925), HMGB3_BOVIN (Q32L31), 
HMGB3_CHICK (P40618), HMGB3_HUMAN (O15347), HMGB3_MOUSE (O54879), 
HMGT_ONCMY  (P07746)
» More

UniProtKB/Swiss-Prot
False negative sequences
29 sequences

HGB1A_HUMAN (B2RPK0), HM20A_CHICK (Q5ZKF4), HM20A_HUMAN (Q9NP66), 
HM20A_MOUSE (Q9DC33), HM20A_XENLA (Q6AZF8), HM20A_XENTR (Q6DIJ5), 
HM20B_BOVIN (Q32L68), HM20B_HUMAN (Q9P0W2), HM20B_MOUSE (Q9Z104), 
HMGB4_BOVIN (Q32L34), HMGB4_HUMAN (Q8WW32), HMGB4_MOUSE (Q6P8W9), 
HMO1_YEAST  (Q03973), MATA2_CANAL (Q71U11), MATA2_KLULA (Q9HG13), 
MATA2_YARLL (O93958), MATB_NEUCS  (P36981), MATD_NEUCR  (Q10116), 
NHP10_YEAST (Q03435), SMCE1_HUMAN (Q969G3), SMCE1_MOUSE (O54941), 
SMCE1_RAT   (Q56A18), SOX21_MOUSE (Q811W0), TOX3_HUMAN  (O15405), 
TOX3_MOUSE  (Q80W03), TOX3_RAT    (B7SBD2), TOX_HUMAN   (O94900), 
TOX_MOUSE   (Q66JW3), VF401_IIV3  (Q196Z2)
» More

PDB
[Detailed view]
7 PDB

1AAB; 1CKT; 1J3X; 2EQZ; 2LY4; 2RTU; 2YRQ

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