Entry: PS00353

General information about the entry

Entry name [info] HMG_BOX_1
Accession [info] PS00353
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED; 01-DEC-2004 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00305

Name and characterization of the entry

Description [info] HMG box A DNA-binding domain signature.
Pattern [info] 
[FI]-S-[KR]-K-C-x-[EK]-R-W-K-T-[MV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 25 in 25 different sequences
Number of true positive hits 25 in 25 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 29
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 46.30 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 25 sequences 

HMG2_DROME  (Q24537    ), HMGB1_BOVIN (P10103    ), HMGB1_CALJA (B0CM99    ), 

HMGB1_CANLF (Q6YKA4    ), HMGB1_CHICK (Q9YH06    ), HMGB1_CRIGR (P07156    ), 
HMGB1_HORSE (Q08IE6    ), HMGB1_HUMAN (P09429    ), HMGB1_MACFA (Q4R844    ), 
HMGB1_MOUSE (P63158    ), HMGB1_PAPAN (A9RA84    ), HMGB1_PIG   (P12682    ), 
HMGB1_PLEMO (B1MTB0    ), HMGB1_RAT   (P63159    ), HMGB2_BOVIN (P40673    ), 
HMGB2_CHICK (P26584    ), HMGB2_HUMAN (P26583    ), HMGB2_MOUSE (P30681    ), 
HMGB2_PIG   (P17741    ), HMGB2_RAT   (P52925    ), HMGB3_BOVIN (Q32L31    ), 
HMGB3_CHICK (P40618    ), HMGB3_HUMAN (O15347    ), HMGB3_MOUSE (O54879    ), 
HMGT_ONCMY  (P07746    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 29 sequences 

HGB1A_HUMAN (B2RPK0    ), HM20A_CHICK (Q5ZKF4    ), HM20A_HUMAN (Q9NP66    ), 

HM20A_MOUSE (Q9DC33    ), HM20A_XENLA (Q6AZF8    ), HM20A_XENTR (Q6DIJ5    ), 
HM20B_BOVIN (Q32L68    ), HM20B_HUMAN (Q9P0W2    ), HM20B_MOUSE (Q9Z104    ), 
HMGB4_BOVIN (Q32L34    ), HMGB4_HUMAN (Q8WW32    ), HMGB4_MOUSE (Q6P8W9    ), 
HMO1_YEAST  (Q03973    ), MATA2_CANAL (Q71U11    ), MATA2_KLULA (Q9HG13    ), 
MATA2_YARLL (O93958    ), MATB_NEUCS  (P36981    ), MATD_NEUCR  (Q10116    ), 
NHP10_YEAST (Q03435    ), SMCE1_HUMAN (Q969G3    ), SMCE1_MOUSE (O54941    ), 
SMCE1_RAT   (Q56A18    ), SOX21_MOUSE (Q811W0    ), TOX3_HUMAN  (O15405    ), 
TOX3_MOUSE  (Q80W03    ), TOX3_RAT    (B7SBD2    ), TOX_HUMAN   (O94900    ), 
TOX_MOUSE   (Q66JW3    ), VF401_IIV3  (Q196Z2    )
» more

PDB
[Detailed view]		 8 PDB

1AAB; 1CKT; 1J3X; 2EQZ; 2LY4; 2RTU; 2YRQ; 4QR9

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