Entry: PS00357

General information about the entry

Entry name [info] HISTONE_H2B
Accession [info] PS00357
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); NOV-1995 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00308

Name and characterization of the entry

Description [info] Histone H2B signature.
Pattern [info]
[KR]-E-[LIVM]-[EQ]-T-x(2)-[KR]-x-[LIVM](2)-x-[PAG]-[DE]-L-x-[KR]-H-A-
[LIVM]-[STA]-E-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 191 in 191 different sequences
Number of true positive hits 191 in 191 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 14
Number of 'partial' sequences 8
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 93.17 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
191 sequences

H2B10_ARATH (Q9FFC0    ), H2B10_ORYSI (A2WKS3    ), H2B10_ORYSJ (Q9LGI2    ), 
H2B11_ARATH (P40283    ), H2B11_ORYSI (A2WWU2    ), H2B11_ORYSJ (Q943L2    ), 
H2B11_XENLA (P02281    ), H2B12_XENLA (P06900    ), H2B1A_HUMAN (Q96A08    ), 
H2B1A_MOUSE (P70696    ), H2B1A_RAT   (Q00729    ), H2B1B_HUMAN (P33778    ), 
H2B1B_MOUSE (Q64475    ), H2B1C_HUMAN (P62807    ), H2B1C_MOUSE (Q6ZWY9    ), 
H2B1D_HUMAN (P58876    ), H2B1F_MOUSE (P10853    ), H2B1H_HUMAN (Q93079    ), 
H2B1H_MOUSE (Q64478    ), H2B1J_HUMAN (P06899    ), H2B1K_BOVIN (Q2M2T1    ), 
H2B1K_HUMAN (O60814    ), H2B1K_MACFA (Q2PFX4    ), H2B1K_MOUSE (Q8CGP1    ), 
H2B1L_HUMAN (Q99880    ), H2B1M_HUMAN (Q99879    ), H2B1M_MOUSE (P10854    ), 
H2B1N_BOVIN (Q32L48    ), H2B1N_HUMAN (Q99877    ), H2B1O_HUMAN (P23527    ), 
H2B1P_MOUSE (Q8CGP2    ), H2B1_ARATH  (Q9LQQ4    ), H2B1_ASHGO  (Q74ZL5    ), 
H2B1_BOVIN  (P62808    ), H2B1_CAEEL  (P04255    ), H2B1_CANAL  (P48989    ), 
H2B1_CANGA  (Q6FWM8    ), H2B1_CHICK  (P0C1H3    ), H2B1_CHLRE  (P50565    ), 
H2B1_DANRE  (Q5BJA5    ), H2B1_DEBHA  (Q6BRG2    ), H2B1_KLULA  (Q6CK60    ), 
H2B1_MAIZE  (P30755    ), H2B1_MEDTR  (Q1S9I9    ), H2B1_ORYSI  (A2XF66    ), 
H2B1_ORYSJ  (A3AGM4    ), H2B1_PONAB  (Q5R893    ), H2B1_RAT    (Q00715    ), 
H2B1_SCHPO  (P04913    ), H2B1_SOLLC  (O65821    ), H2B1_TETTS  (P08993    ), 
H2B1_TIGCA  (P35068    ), H2B1_WHEAT  (P27807    ), H2B1_YEAST  (P02293    ), 
H2B2B_MOUSE (Q64525    ), H2B2E_HUMAN (Q16778    ), H2B2E_MOUSE (Q64524    ), 
H2B2E_PONAB (Q5RCP8    ), H2B2F_HUMAN (Q5QNW6    ), H2B2_ASHGO  (Q8J1F8    ), 
H2B2_CAEEL  (Q27894    ), H2B2_CANAL  (Q59VP1    ), H2B2_CANGA  (Q6FM30    ), 
H2B2_CHLRE  (P54345    ), H2B2_DEBHA  (Q6BKW7    ), H2B2_KLULA  (Q6CMV8    ), 
H2B2_MAIZE  (P30756    ), H2B2_ORYSI  (A2YWI3    ), H2B2_ORYSJ  (Q6ZBP3    ), 
H2B2_PICST  (A3LXE6    ), H2B2_SOLLC  (O65818    ), H2B2_TETTS  (P08994    ), 
H2B2_WHEAT  (P05621    ), H2B2_YEAST  (P02294    ), H2B3A_MOUSE (Q9D2U9    ), 
H2B3B_HUMAN (Q8N257    ), H2B3B_MOUSE (Q8CGP0    ), H2B3_ARATH  (Q9SI96    ), 
H2B3_CAEEL  (Q27484    ), H2B3_CHLRE  (P54346    ), H2B3_DANRE  (Q6PC60    ), 
H2B3_MAIZE  (Q43261    ), H2B3_MEDTR  (Q1SU99    ), H2B3_ORYSI  (A2WKP3    ), 
H2B3_ORYSJ  (Q94JJ7    ), H2B3_SOLLC  (O65819    ), H2B3_TIGCA  (P35069    ), 
H2B3_VOLCA  (P16867    ), H2B3_WHEAT  (Q43217    ), H2B4_ARATH  (Q9ZUS0    ), 
H2B4_CAEEL  (Q27876    ), H2B4_CHLRE  (P54347    ), H2B4_MAIZE  (P49120    ), 
H2B4_ORYSI  (A2WKP5    ), H2B4_ORYSJ  (Q94JJ4    ), H2B4_VOLCA  (P16868    ), 
H2B4_WHEAT  (Q43215    ), H2B5_ARATH  (Q9SF55    ), H2B5_CHICK  (P0C1H4    ), 
H2B5_MAIZE  (P54348    ), H2B5_ORYSI  (A2WKT4    ), H2B5_ORYSJ  (Q94JE1    ), 
H2B5_WHEAT  (Q43216    ), H2B6_ARATH  (O23629    ), H2B6_ORYSI  (A2WKT1    ), 
H2B6_ORYSJ  (Q9LGH4    ), H2B7_ARATH  (Q9LZT0    ), H2B7_CHICK  (P0C1H5    ), 
H2B7_ORYSI  (A2WKS8    ), H2B7_ORYSJ  (Q7GBK0    ), H2B8_ARATH  (Q9LFF6    ), 
H2B8_CHICK  (Q9PSW9    ), H2B8_ORYSI  (A2WKS5    ), H2B8_ORYSJ  (Q9LGH8    ), 
H2B9_ARATH  (Q9LZ45    ), H2B9_ORYSI  (A2Y7R3    ), H2B9_ORYSJ  (Q6F362    ), 
H2BE1_PSAMI (P02287    ), H2BE2_PSAMI (P02288    ), H2BE_STRPU  (P02289    ), 
H2BFS_HUMAN (P57053    ), H2BL1_PSAMI (P07794    ), H2BL1_STRPU (P16888    ), 
H2BL2_PSAMI (P07795    ), H2BL3_STRPU (P16889    ), H2BL4_STRPU (P16890    ), 
H2BS1_PARAN (P02290    ), H2BS1_PSAMI (Q27749    ), H2BS1_STRPU (P06145    ), 
H2BS2_LYTPI (P06146    ), H2BS2_PARAN (P02291    ), H2BS2_PSAMI (Q27750    ), 
H2BS2_STRPU (P16887    ), H2BS3_PARAN (P02292    ), H2B_ACRFO   (P35067    ), 
H2B_AGABI   (P78567    ), H2B_AJECA   (Q7Z9J4    ), H2B_ANOGA   (Q27442    ), 
H2B_ASPCL   (A1CJ09    ), H2B_ASPFU   (Q4WWC5    ), H2B_ASPNC   (A2QY49    ), 
H2B_ASPOR   (Q2U5A9    ), H2B_ASPTN   (Q0CBD1    ), H2B_ASTRU   (P02286    ), 
H2B_CAIMO   (P14001    ), H2B_CAPAN   (O49118    ), H2B_CHAGB   (Q2HH38    ), 
H2B_CHITH   (P21897    ), H2B_COCIM   (Q1E5N0    ), H2B_CRYNB   (P0CO03    ), 
H2B_CRYNJ   (P0CO02    ), H2B_DROER   (P59781    ), H2B_DROHY   (P17271    ), 
H2B_DROMA   (Q76FE5    ), H2B_DROME   (P02283    ), H2B_DROOR   (Q76FE9    ), 
H2B_DROSE   (Q76FD7    ), H2B_DROSI   (P59782    ), H2B_DROTE   (Q76FF3    ), 
H2B_DROYA   (Q8I1N0    ), H2B_EMENI   (P23754    ), H2B_ENTIV   (P40284    ), 
H2B_EUPCR   (O97484    ), H2B_GIBZE   (Q4HTT2    ), H2B_GOSHI   (O22582    ), 
H2B_HOLTU   (P48557    ), H2B_LEIEN   (P27893    ), H2B_LITVA   (P83863    ), 
H2B_LODEL   (A5DWF0    ), H2B_MAGO7   (P0CT13    ), H2B_MAGOY   (L7I1W3    ), 
H2B_MARGL   (P02285    ), H2B_NEOFI   (A1D8G9    ), H2B_NEUCR   (P37210    ), 
H2B_OLILU   (P82887    ), H2B_ONCMY   (P69069    ), H2B_PATGR   (P02284    ), 
H2B_PATPE   (Q7M4G7    ), H2B_PHANO   (Q0U1A0    ), H2B_PLADU   (P19374    ), 
H2B_PODAS   (Q875B7    ), H2B_RHASC   (Q75VN4    ), H2B_ROSNE   (Q8J1K2    ), 
H2B_SALTR   (P69070    ), H2B_SIPNU   (P30757    ), H2B_TETPY   (Q7M400    ), 
H2B_TOBAC   (P93354    ), H2B_TRYCR   (P27795    ), H2B_URECA   (P27326    ), 
H2B_USTMA   (Q4PEF8    ), HSB1_PICST  (A3LZZ1    )
» more

UniProtKB/Swiss-Prot
False negative sequences
14 sequences

H2B1_PICGU  (A5DJJ1    ), H2B2C_HUMAN (Q6DN03    ), H2B2D_HUMAN (Q6DRA6    ), 
H2B2_ARATH  (Q9SGE3    ), H2B2_MEDTR  (Q1SWQ1    ), H2B2_PICGU  (A5DBG5    ), 
H2BFM_HUMAN (P0C1H6    ), H2BV1_DICDI (Q54BC2    ), H2BV2_DICDI (Q7KWR7    ), 
H2BV3_DICDI (Q54LP8    ), H2BV_BOVIN  (Q8WNR4    ), H2BV_MOUSE  (Q9D9Z7    ), 
H2BWT_HUMAN (Q7Z2G1    ), H2B_ENCCU   (Q8SRE2    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
8 sequences

H2B1_ICTPU  (P81903    ), H2B3_ICTPU  (P81904    ), H2BS1_ECHES (P13281    ), 
H2BS2_ECHES (P13282    ), H2BS3_ECHES (P13283    ), H2B_CRONI   (P02280    ), 
H2B_CYPCA   (P83837    ), H2B_PEA     (Q99285    )
» more

PDB
[Detailed view]
147 PDB

1AOI; 1EQZ; 1F66; 1HIO; 1HQ3; 1ID3; 1KX3; 1KX4; 1KX5; 1M18; 1M19; 1M1A; 1P34; 1P3A; 1P3B; 1P3F; 1P3G; 1P3I; 1P3K; 1P3L; 1P3M; 1P3O; 1P3P; 1S32; 1TZY; 1U35; 1ZBB; 1ZLA; 2ARO; 2CV5; 2F8N; 2FJ7; 2HIO; 2JSS; 2NQB; 2NZD; 2PYO; 2RVQ; 2XQL; 3A6N; 3AFA; 3AN2; 3AV1; 3AV2; 3AYW; 3AZE; 3AZF; 3AZG; 3AZH; 3AZI; 3AZJ; 3AZK; 3AZL; 3AZM; 3AZN; 3B6F; 3B6G; 3C9K; 3KUY; 3KWQ; 3KXB; 3LEL; 3LJA; 3LZ0; 3LZ1; 3MGP; 3MGQ; 3MGR; 3MGS; 3MNN; 3MVD; 3O62; 3REH; 3REI; 3REJ; 3REK; 3REL; 3TU4; 3UT9; 3UTA; 3UTB; 3W96; 3W97; 3W98; 3W99; 3WA9; 3WAA; 3WKJ; 3WTP; 3X1S; 3X1T; 3X1U; 3X1V; 4CAY; 4J8U; 4J8V; 4J8W; 4J8X; 4JJN; 4KGC; 4KHA; 4KUD; 4LD9; 4M6B; 4NFT; 4QLC; 4R8P; 4WNN; 4WU8; 4WU9; 4X23; 4XUJ; 4XZQ; 4YM5; 4YM6; 4YS3; 4Z5T; 4Z66; 4ZUX; 5AV5; 5AV6; 5AV8; 5AV9; 5AVB; 5AVC; 5AY8; 5B0Y; 5B0Z; 5B24; 5B2I; 5B2J; 5B31; 5B32; 5B33; 5B40; 5CP6; 5CPI; 5CPJ; 5CPK; 5DNM; 5DNN; 5E5A; 5F99; 5FUG; 5G2E; 5HQ2; 5KGF
» more

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