Entry: PS00368

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General information about the entry

Entry name [info] RIBORED_SMALL
Accession [info] PS00368
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2001 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00317
Associated ProRule [info] PRU10014

Name and characterization of the entry

Description [info] Ribonucleotide reductase small subunit signature.
Pattern [info]
[IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)-
[LIVFY]-[IVFYCSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 82 in 82 different sequences
Number of true positive hits 82 in 82 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.13 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] iron at position 2
Site [info] iron at position 5
Site [info] active_site at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
82 sequences

BNRDF_BPSPB (O64174), RIR2A_ARATH (P50651), RIR2A_MYCTO (P9WH72), 
RIR2A_MYCTU (P9WH73), RIR2B_ARATH (Q6Y657), RIR2B_HUMAN (Q7LG56), 
RIR2B_MACFA (Q4R741), RIR2B_MOUSE (Q6PEE3), RIR2B_MYCTO (P9WH70), 
RIR2B_MYCTU (P9WH71), RIR2B_PONAB (Q5R9G0), RIR2C_ARATH (Q9LSD0), 
RIR2_ALHV1  (O36410), RIR2_AQUAE  (O67475), RIR2_ASFB7  (P42492), 
RIR2_ASFK5  (P0C8I0), RIR2_ASFM2  (P26713), RIR2_ASFP4  (P0C8I1), 
RIR2_ASFWA  (P0C8I2), RIR2_BACSU  (P50621), RIR2_BHV1C  (Q01319), 
RIR2_BPT4   (P11156), RIR2_BUCAI  (P57275), RIR2_BUCAP  (Q8K9W4), 
RIR2_BUCBP  (Q89AS5), RIR2_CAEEL  (P42170), RIR2_DANRE  (P79733), 
RIR2_DICDI  (P42521), RIR2_DROME  (P48592), RIR2_EBVA8  (P0CAP7), 
RIR2_EBVB9  (P0CAP6), RIR2_EBVG   (P0C701), RIR2_ECO57  (P69925), 
RIR2_ECOLI  (P69924), RIR2_EHV1B  (P28847), RIR2_EHV2   (Q66662), 
RIR2_EHV4   (P50644), RIR2_ENCCU  (Q8SRR2), RIR2_GAHVM  (Q77MS0), 
RIR2_HAEIN  (P43755), RIR2_HELPJ  (Q9ZKC3), RIR2_HELPY  (P55983), 
RIR2_HHV11  (P10224), RIR2_HHV1K  (P06474), RIR2_HHV23  (P69520), 
RIR2_HHV2H  (P69521), RIR2_HHV8P  (F5HAW0), RIR2_HUMAN  (P31350), 
RIR2_LEIAM  (O46310), RIR2_MACFA  (Q4R7Q7), RIR2_MESAU  (Q60561), 
RIR2_MIMIV  (Q7T6Y9), RIR2_MOUSE  (P11157), RIR2_MYCLE  (Q9CBQ2), 
RIR2_NEUCR  (Q9C167), RIR2_PLAF4  (P50650), RIR2_PLAFG  (P50649), 
RIR2_PSHV1  (Q6UDJ1), RIR2_RAT    (Q4KLN6), RIR2_RSIV   (Q9QTF2), 
RIR2_SALTY  (P37427), RIR2_SCHPO  (P36603), RIR2_SHV21  (Q01038), 
RIR2_SPISO  (P07201), RIR2_SUHVK  (P50645), RIR2_SWPVK  (P32209), 
RIR2_TOBAC  (P49730), RIR2_TREPA  (O83092), RIR2_TRYBB  (O15910), 
RIR2_VACCA  (O57175), RIR2_VACCC  (P20493), RIR2_VACCP  (P29883), 
RIR2_VACCW  (P11158), RIR2_VAR67  (P33799), RIR2_VZVD   (P09247), 
RIR2_VZVO   (Q4JQV7), RIR2_YEAST  (P09938), RIR2_YLDV   (Q9DHU2), 
RIR4_ECOLI  (P37146), RIR4_SALTY  (P17424), RIR4_YEAST  (P49723), 
YOSP_BACSU  (O30601)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

RIR2_BACHD  (Q9KFH7), RIR2_CHLMU  (Q9PL92), RIR2_CHLPN  (Q9Z6S4), 
RIR2_CHLTR  (O84835), RIR2_IIV3   (Q197B2), RIR2_IIV6   (Q91FE8), 
RIR2_MYCGA  (Q9XC20), RIR2_MYCGE  (P47471), RIR2_MYCPN  (P75461), 
RIR2_OSHVF  (Q6R7K3)
» More

PDB
[Detailed view]
47 PDB

1AV8; 1H0N; 1H0O; 1JK0; 1JPR; 1JQC; 1MRR; 1MXR; 1PFR; 1PIM; 1PIU; 1PIY; 1PIZ; 1PJ0; 1PJ1; 1PM2; 1R2F; 1R65; 1RIB; 1RNR; 1SMQ; 1SMS; 1UZR; 1W68; 1W69; 1XIK; 1XSM; 2ALX; 2BQ1; 2R2F; 2UW2; 2VUX; 3HF1; 3N37; 3N38; 3N39; 3N3A; 3N3B; 3OLJ; 3UUS; 3VPM; 3VPN; 3VPO; 4DR0; 4ERM; 4ERP; 4M1F
» More

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