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Entry: PS00368
General information about the entry
Entry nameRIBORED_SMALL
Accession numberPS00368
Entry typePATTERN
DateNOV-1990 (CREATED); DEC-2001 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00317
Associated ProRulePRU10014
Name and characterization of the entry
DescriptionRibonucleotide reductase small subunit signature.
Pattern[IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)- [LIVFY]-[IVFYCSA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 79 hits in 79 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 79 hits in 79 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 10
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.76 %
Comments
  • Taxonomic range: Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 2,iron
  • `Interesting' site in the pattern: 5,iron
  • `Interesting' site in the pattern: 9,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
BNRDF_BPSPB (O64174), RIR2A_ARATH (P50651), RIR2A_MYCTU (Q10840), 
RIR2B_ARATH (Q6Y657), RIR2B_HUMAN (Q7LG56), RIR2B_MACFA (Q4R741), 
RIR2B_MOUSE (Q6PEE3), RIR2B_MYCTU (Q50549), RIR2B_PONAB (Q5R9G0), 
RIR2C_ARATH (Q9LSD0), RIR2_ALHV1  (O36410), RIR2_AQUAE  (O67475), 
RIR2_ASFB7  (P42492), RIR2_ASFK5  (P0C8I0), RIR2_ASFM2  (P26713), 
RIR2_ASFP4  (P0C8I1), RIR2_ASFWA  (P0C8I2), RIR2_BACSU  (P50621), 
RIR2_BHV1C  (Q01319), RIR2_BPT4   (P11156), RIR2_BUCAI  (P57275), 
RIR2_BUCAP  (Q8K9W4), RIR2_BUCBP  (Q89AS5), RIR2_CAEEL  (P42170), 
RIR2_DANRE  (P79733), RIR2_DICDI  (P42521), RIR2_DROME  (P48592), 
RIR2_EBVA8  (P0CAP7), RIR2_EBVB9  (P0CAP6), RIR2_EBVG   (P0C701), 
RIR2_ECO57  (P69925), RIR2_ECOLI  (P69924), RIR2_EHV1B  (P28847), 
RIR2_EHV2   (Q66662), RIR2_EHV4   (P50644), RIR2_ENCCU  (Q8SRR2), 
RIR2_GAHVM  (Q77MS0), RIR2_HAEIN  (P43755), RIR2_HELPJ  (Q9ZKC3), 
RIR2_HELPY  (P55983), RIR2_HHV11  (P10224), RIR2_HHV1K  (P06474), 
RIR2_HHV23  (P69520), RIR2_HHV2H  (P69521), RIR2_HUMAN  (P31350), 
RIR2_LEIAM  (O46310), RIR2_MACFA  (Q4R7Q7), RIR2_MESAU  (Q60561), 
RIR2_MIMIV  (Q7T6Y9), RIR2_MOUSE  (P11157), RIR2_MYCLE  (Q9CBQ2), 
RIR2_NEUCR  (Q9C167), RIR2_PLAF4  (P50650), RIR2_PLAFG  (P50649), 
RIR2_PSHV1  (Q6UDJ1), RIR2_RAT    (Q4KLN6), RIR2_RSIV   (Q9QTF2), 
RIR2_SALTY  (P37427), RIR2_SCHPO  (P36603), RIR2_SHV21  (Q01038), 
RIR2_SPISO  (P07201), RIR2_SUHVK  (P50645), RIR2_SWPVK  (P32209), 
RIR2_TOBAC  (P49730), RIR2_TREPA  (O83092), RIR2_TRYBB  (O15910), 
RIR2_VACCA  (O57175), RIR2_VACCC  (P20493), RIR2_VACCP  (P29883), 
RIR2_VACCW  (P11158), RIR2_VAR67  (P33799), RIR2_VZVD   (P09247), 
RIR2_VZVO   (Q4JQV7), RIR2_YEAST  (P09938), RIR2_YLDV   (Q9DHU2), 
RIR4_ECOLI  (P37146), RIR4_SALTY  (P17424), RIR4_YEAST  (P49723), 
YOSP_BACSU  (O30601)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RIR2_BACHD  (Q9KFH7), RIR2_CHLMU  (Q9PL92), RIR2_CHLPN  (Q9Z6S4), 
RIR2_CHLTR  (O84835), RIR2_IIV3   (Q197B2), RIR2_IIV6   (Q91FE8), 
RIR2_MYCGA  (Q9XC20), RIR2_MYCGE  (P47471), RIR2_MYCPN  (P75461), 
RIR2_OSHVF  (Q6R7K3)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1AV8; 1H0N; 1H0O; 1JK0; 1JPR; 1JQC; 1MRR; 1MXR; 1PFR; 1PIM; 1PIU; 1PIY; 1PIZ; 1PJ0; 1PJ1; 1PM2; 1R2F; 1R65; 1RIB; 1RNR; 1SMQ; 1SMS; 1UZR; 1W68; 1W69; 1XIK; 1XSM; 2ALX; 2BQ1; 2R2F; 2UW2; 2VUX; 3HF1; 3N37; 3N38; 3N39; 3N3A; 3N3B; 3OLJ;

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