Entry: PS00368

General information about the entry

Entry name [info] RIBORED_SMALL
Accession [info] PS00368
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2001 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00317
Associated ProRule [info] PRU10014

Name and characterization of the entry

Description [info] Ribonucleotide reductase small subunit signature.
Pattern [info]
[IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)-
[LIVFY]-[IVFYCSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 83 in 83 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.25 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] iron at position 2
Site [info] iron at position 5
Site [info] active_site at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

BNRDF_BPSPB (O64174    ), RI2BC_ARATH (P0DKH2    ), RI2BL_ARATH (P0DKH3    ), 
RIR2A_ARATH (P50651    ), RIR2A_MYCTO (P9WH72    ), RIR2A_MYCTU (P9WH73    ), 
RIR2B_HUMAN (Q7LG56    ), RIR2B_MACFA (Q4R741    ), RIR2B_MOUSE (Q6PEE3    ), 
RIR2B_MYCTO (P9WH70    ), RIR2B_MYCTU (P9WH71    ), RIR2B_PONAB (Q5R9G0    ), 
RIR2C_ARATH (Q9LSD0    ), RIR2_ALHV1  (O36410    ), RIR2_AQUAE  (O67475    ), 
RIR2_ASFB7  (P42492    ), RIR2_ASFK5  (P0C8I0    ), RIR2_ASFM2  (P26713    ), 
RIR2_ASFP4  (P0C8I1    ), RIR2_ASFWA  (P0C8I2    ), RIR2_BACSU  (P50621    ), 
RIR2_BHV1C  (Q01319    ), RIR2_BPT4   (P11156    ), RIR2_BUCAI  (P57275    ), 
RIR2_BUCAP  (Q8K9W4    ), RIR2_BUCBP  (Q89AS5    ), RIR2_CAEEL  (P42170    ), 
RIR2_DANRE  (P79733    ), RIR2_DICDI  (P42521    ), RIR2_DROME  (P48592    ), 
RIR2_EBVA8  (P0CAP7    ), RIR2_EBVB9  (P0CAP6    ), RIR2_EBVG   (P0C701    ), 
RIR2_ECO57  (P69925    ), RIR2_ECOLI  (P69924    ), RIR2_EHV1B  (P28847    ), 
RIR2_EHV2   (Q66662    ), RIR2_EHV4   (P50644    ), RIR2_ENCCU  (Q8SRR2    ), 
RIR2_GAHVM  (Q77MS0    ), RIR2_HAEIN  (P43755    ), RIR2_HELPJ  (Q9ZKC3    ), 
RIR2_HELPY  (P55983    ), RIR2_HHV11  (P10224    ), RIR2_HHV1K  (P06474    ), 
RIR2_HHV23  (P69520    ), RIR2_HHV2H  (P69521    ), RIR2_HHV8P  (F5HAW0    ), 
RIR2_HUMAN  (P31350    ), RIR2_LEIAM  (O46310    ), RIR2_MACFA  (Q4R7Q7    ), 
RIR2_MESAU  (Q60561    ), RIR2_MIMIV  (Q7T6Y9    ), RIR2_MOUSE  (P11157    ), 
RIR2_MYCLE  (Q9CBQ2    ), RIR2_NEUCR  (Q9C167    ), RIR2_PLAF4  (P50650    ), 
RIR2_PLAFG  (P50649    ), RIR2_PSHV1  (Q6UDJ1    ), RIR2_RAT    (Q4KLN6    ), 
RIR2_RSIV   (Q9QTF2    ), RIR2_SALTY  (P37427    ), RIR2_SCHPO  (P36603    ), 
RIR2_SHV21  (Q01038    ), RIR2_SPISO  (P07201    ), RIR2_SUHVK  (P50645    ), 
RIR2_SWPVK  (P32209    ), RIR2_TOBAC  (P49730    ), RIR2_TREPA  (O83092    ), 
RIR2_TRYBB  (O15910    ), RIR2_VACCA  (O57175    ), RIR2_VACCC  (P20493    ), 
RIR2_VACCP  (P29883    ), RIR2_VACCW  (P11158    ), RIR2_VAR67  (P33799    ), 
RIR2_VZVD   (P09247    ), RIR2_VZVO   (Q4JQV7    ), RIR2_YEAST  (P09938    ), 
RIR2_YLDV   (Q9DHU2    ), RIR4_ECOLI  (P37146    ), RIR4_SALTY  (P17424    ), 
RIR4_YEAST  (P49723    ), YOSP_BACSU  (O30601    )
» more

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

RIR2_BACHD  (Q9KFH7    ), RIR2_CHLMU  (Q9PL92    ), RIR2_CHLPN  (Q9Z6S4    ), 
RIR2_CHLTR  (O84835    ), RIR2_IIV3   (Q197B2    ), RIR2_IIV6   (Q91FE8    ), 
RIR2_MYCGA  (Q9XC20    ), RIR2_MYCGE  (P47471    ), RIR2_MYCPN  (P75461    ), 
RIR2_OSHVF  (Q6R7K3    )
» more

PDB
[Detailed view]
51 PDB

1AV8; 1H0N; 1H0O; 1JK0; 1JPR; 1JQC; 1MRR; 1MXR; 1PFR; 1PIM; 1PIU; 1PIY; 1PIZ; 1PJ0; 1PJ1; 1PM2; 1R2F; 1R65; 1RIB; 1RNR; 1SMQ; 1SMS; 1UZR; 1W68; 1W69; 1XIK; 1XSM; 2ALX; 2BQ1; 2R2F; 2UW2; 2VUX; 3HF1; 3N37; 3N38; 3N39; 3N3A; 3N3B; 3OLJ; 3UUS; 3VPM; 3VPN; 3VPO; 4DR0; 4ERM; 4ERP; 4M1F; 5CNS; 5CNT; 5CNU; 5CNV
» more

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