Entry: PS00379

General information about the entry
Entry name CDP_ALCOHOL_P_TRANSF
Accession number PS00379
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00321
Name and characterization of the entry
DescriptionCDP-alcohol phosphatidyltransferases signature.
Pattern D-G-x(2)-A-R-x(7,8)-G-x(3)-D-x(3)-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 100 hits in 100 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 99 hits in 99 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 5
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 99.00 %
  • Recall (true hits / (true hits + false negatives)): 95.19 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CAPTA_DICDI (Q55AQ3), CAPTB_DICDI (Q54XM0), CAPTC_DICDI (Q550W1), 
CAPTD_DICDI (Q8T2Q6), CDIPT_HUMAN (O14735), CDIPT_MOUSE (Q8VDP6), 
CDIPT_RAT   (P70500), CEPT1_CHICK (Q5ZKD1), CEPT1_HUMAN (Q9Y6K0), 
CEPT1_MOUSE (Q8BGS7), CEPT1_RAT   (Q6AXM5), CEPT1_XENLA (Q7ZYQ3), 
CEPT1_XENTR (Q28H54), CHPT1_BOVIN (Q1LZE6), CHPT1_CHICK (Q5ZHQ5), 
CHPT1_DANRE (Q7ZW02), CHPT1_HUMAN (Q8WUD6), CHPT1_MOUSE (Q8C025), 
CHPT1_RAT   (Q66H21), CHPT1_XENLA (Q4KLV1), CPT1_YEAST  (P17898), 
CRD1_YEAST  (Q07560), EPT1_BOVIN  (Q17QM4), EPT1_HUMAN  (Q9C0D9), 
EPT1_MOUSE  (Q80TA1), EPT1_PONAB  (Q5NV96), EPT1_YEAST  (P22140), 
PGSA1_MYCTU (P63753), PGSA2_MYCTU (O33288), PGSA_AQUAE  (O67908), 
PGSA_BACSU  (P46322), PGSA_BLOFL  (Q7VR12), PGSA_BLOPB  (Q492P7), 
PGSA_ECO57  (P0ABG0), PGSA_ECOK1  (A1AC64), PGSA_ECOL5  (Q0TGS6), 
PGSA_ECOL6  (P0ABF9), PGSA_ECOLI  (P0ABF8), PGSA_ECOUT  (Q1RAM8), 
PGSA_ERWCT  (Q6D364), PGSA_HAEIN  (P44528), PGSA_MYCBO  (P63754), 
PGSA_MYCGE  (P47360), PGSA_MYCPN  (P75520), PGSA_PHOLL  (Q7N5C8), 
PGSA_PSEFL  (P45419), PGSA_RHOS4  (Q3IYX7), PGSA_RICBR  (Q1RKM3), 
PGSA_RICCN  (Q92JJ2), PGSA_RICFE  (Q4UN77), PGSA_RICPR  (Q9ZE96), 
PGSA_RICTY  (Q68XS5), PGSA_SALCH  (Q57N57), PGSA_SALPA  (Q5PI18), 
PGSA_SALTI  (Q8XFD0), PGSA_SALTY  (Q7CQB9), PGSA_SHIBS  (Q322L9), 
PGSA_SHIDS  (Q32HD9), PGSA_SHIF8  (Q0T3L5), PGSA_SHIFL  (Q83R47), 
PGSA_SHISS  (Q3Z2T6), PGSA_SODGM  (Q2NTS8), PGSA_STAAC  (Q5HGE8), 
PGSA_STAAM  (P63755), PGSA_STAAN  (P63756), PGSA_STAAR  (Q6GHF2), 
PGSA_STAAS  (Q6G9T0), PGSA_STAAW  (P63757), PGSA_STAEQ  (Q5HPQ8), 
PGSA_STAES  (Q8CPF7), PGSA_TREPA  (O66076), PGSA_WIGBR  (Q8D2N9), 
PGSA_YERE8  (A1JLU9), PGSA_YERPA  (Q1C8L0), PGSA_YERPE  (Q8ZF51), 
PGSA_YERPN  (Q1CHE5), PGSA_YERPP  (A4TK40), PGSA_YERPS  (Q66BN4), 
PIS1_ARATH  (Q8LBA6), PIS2_ARATH  (Q8GUK6), PISA_MYCSM  (Q9F7Y9), 
PISA_MYCTU  (Q7D6W6), PIS_SCHPO   (Q10153), PIS_YEAST   (P06197), 
PSS_BACSU   (P39823), PSS_ENCCU   (Q95ZE2), PSS_HELPJ   (Q9ZM68), 
PSS_HELPY   (Q48269), PSS_METJA   (Q58609), PSS_MYCBO   (P59949), 
PSS_MYCLE   (Q9ZBM2), PSS_MYCTU   (P96282), PSS_SCHPO   (O94584), 
PSS_YEAST   (P08456), Y1480_AQUAE (O67456), Y460_PYRHO  (O58215), 
YF38_SCHPO  (O13899), YF3A_SCHPO  (O13901), YNJF_ECOLI  (P76226)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CRLS1_CAEEL (O01916), CRLS1_DROME (Q8MZC4), CRLS1_HUMAN (Q9UJA2), 
CRLS1_MOUSE (Q80ZM8), CRLS1_RAT   (Q5U2V5)
False positive hits (sequences which do not belong to the set under consideration):
RIFK_HALSA  (Q9HNF4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

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