Entry: PS00398

General information about the entry
Entry name RECOMBINASES_2
Accession number PS00398
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00334
Name and characterization of the entry
DescriptionSite-specific recombinases signature 2.
Pattern G-[DE]-x(2)-[LIVM]-{E}-x-{V}-[LIVM]-[DT]-R-[LIVM]-[GSA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 34 hits in 34 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 31 hits in 31 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 3 hits in 3 different sequences
  • Number of known missed hits: 8
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 91.18 %
  • Recall (true hits / (true hits + false negatives)): 79.49 %
Comments
  • Taxonomic range: Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 
DNIV_BPMU   (P03015), DNIV_BPP1   (P10311), DNIV_BPP7   (P21703), 
HIN_SALAE   (Q02869), HIN_SALTY   (P03013), PARA4_ECOLX (P22996), 
PINE_ECOLI  (P03014), PINQ_ECOLI  (P77170), PINR_ECOL6  (P0ADI1), 
PINR_ECOLI  (P0ADI0), RES4_ECOLX  (P13606), RES_CLOPE   (Q93MD2), 
RES_CLOPF   (P07945), STBA_PSEUB  (Q52563), TNPT_PSEPU  (P30739), 
TNR0_ECOLX  (P05823), TNR1_ECOLI  (P03012), TNR2_ECOLX  (P04130), 
TNR3_ECOLX  (P0ADI2), TNR3_KLEPN  (P0ADI3), TNR4_KLEPN  (P21424), 
TNR5_PSEAI  (P06691), TNR7_ECOLX  (P0C1G2), TNR7_ENTFL  (P06693), 
TNR7_PSEPU  (P0C1G3), UVP1_ECOLX  (P18957), Y4CG_RHISN  (P55389), 
Y4LS_RHISN  (P55559)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CISA_BACSU  (P17867), ISTA_PSEAI  (P15025), TNR6_ENTFC  (Q06237), 
YL103_MIMIV (Q5UPI1), YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006), 
YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
DNIV_BPD10  (Q38199), PINH_ECOLI  (P76611)
False positive hits (sequences which do not belong to the set under consideration):
FOLD_ALCBS  (Q0VQ92), MLL2_HUMAN  (O14686), NTE1_CANGA  (Q6FKJ1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2R0Q; 2RSL; 3PKZ; 3UJ3;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or