Entry: PS00398

Forthcoming changes to the profile format
General information about the entry

Entry name [info] RECOMBINASES_2
Accession [info] PS00398
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00334

Name and characterization of the entry

Description [info] Site-specific recombinases signature 2.
Pattern [info]
G-[DE]-x(2)-[LIVM]-{E}-x-{V}-[LIVM]-[DT]-R-[LIVM]-[GSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 35 in 35 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 91.43 %
Recall (true positives / (true positives + false negatives)) 80.00 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 
DNIV_BPP1   (P10311), DNIV_BPP7   (P21703), GIN_BPD10   (Q38199), 
GIN_BPMU    (P03015), HIN_SALAE   (Q02869), HIN_SALTY   (P03013), 
PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), PINQ_ECOLI  (P77170), 
PINR_ECOL6  (P0ADI1), PINR_ECOLI  (P0ADI0), RES4_ECOLX  (P13606), 
RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), STBA_PSEUB  (Q52563), 
TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), TNR1_ECOLI  (P03012), 
TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), TNR3_KLEPN  (P0ADI3), 
TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), TNR7_ECOLX  (P0C1G2), 
TNR7_ENTFL  (P06693), TNR7_PSEPU  (P0C1G3), UVP1_ECOLX  (P18957), 
Y4CG_RHISN  (P55389), Y4LS_RHISN  (P55559)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

CISA_BACSU  (P17867), ISTA_PSEAI  (P15025), TNR6_ENTFC  (Q06237), 
YL103_MIMIV (Q5UPI1), YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006), 
YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PINH_ECOLI  (P76611)

		
UniProtKB/Swiss-Prot
False positive sequences
3 sequences

FOLD_ALCBS  (Q0VQ92), KMT2D_HUMAN (O14686), NTE1_CANGA  (Q6FKJ1)

		
PDB
[Detailed view]
12 PDB

1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2R0Q; 2RSL; 3PKZ; 3UJ3; 4M6F

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission