Entry: PS00414

General information about the entry
Entry name PROFILIN
Accession number PS00414
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-1991 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00372
Name and characterization of the entry
DescriptionProfilin signature.
Pattern <x(0,1)-[STA]-x(0,1)-W-[DENQH]-x-[YI]-x-[DEQ].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 116 hits in 116 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 112 hits in 112 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 14
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 96.55 %
  • Recall (true hits / (true hits + false negatives)): 88.89 %
Comments
  • Taxonomic range: Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ALL2A_OLEEU (O24169), ALL2B_OLEEU (O24170), ALL2C_OLEEU (O24171), 
PRO1A_ACACA (P68696), PRO1B_ACACA (Q95VF7), PROF1_AMBAR (Q64LH1), 
PROF1_ARATH (Q42449), PROF1_ARTVU (Q8H2C9), PROF1_BOVIN (P02584), 
PROF1_CAEEL (Q9XW16), PROF1_CITSI (P84177), PROF1_DICDI (P26199), 
PROF1_HEVBR (O65812), PROF1_HORVU (P52184), PROF1_HUMAN (P07737), 
PROF1_LILLO (Q9SNW7), PROF1_MAIZE (P35081), PROF1_MALDO (Q9XF40), 
PROF1_MOUSE (P62962), PROF1_PARJU (Q9XG85), PROF1_PHAVU (P49231), 
PROF1_PHLPR (P35079), PROF1_PHYPO (P22271), PROF1_RAT   (P62963), 
PROF1_RICCO (O82572), PROF1_SOLLC (Q41344), PROF1_SOYBN (O65809), 
PROF1_STRPU (P32006), PROF1_TOBAC (P41372), PROF1_WHEAT (P49232), 
PROF2_ACACA (P19984), PROF2_AMBAR (Q64LH2), PROF2_ARATH (Q42418), 
PROF2_ARTVU (Q8H2C8), PROF2_BOVIN (Q09430), PROF2_DICDI (P26200), 
PROF2_HEVBR (Q9STB6), PROF2_HUMAN (P35080), PROF2_LILLO (Q9SNW6), 
PROF2_MACFA (Q4R4P8), PROF2_MAIZE (P35082), PROF2_MALDO (Q9XF41), 
PROF2_MOUSE (Q9JJV2), PROF2_PARJU (Q9T0M8), PROF2_PHLPR (O24650), 
PROF2_PHYPO (P18322), PROF2_PONAB (Q5R4E2), PROF2_RAT   (Q9EPC6), 
PROF2_SOLLC (Q93YG7), PROF2_SOYBN (O65810), PROF2_TOBAC (Q9ST99), 
PROF2_WHEAT (P49233), PROF3_AMBAR (Q64LH0), PROF3_ARATH (Q38904), 
PROF3_DICDI (Q8T8M2), PROF3_HEVBR (Q9M7N0), PROF3_LILLO (Q9SNW5), 
PROF3_MAIZE (P35083), PROF3_MALDO (Q9XF42), PROF3_PHLPR (O24282), 
PROF3_TOBAC (Q9ST98), PROF4_ARATH (Q38905), PROF4_HEVBR (Q9M7M9), 
PROF4_MAIZE (O22655), PROF5_ARATH (Q9FE63), PROF5_HEVBR (Q9M7M8), 
PROF5_MAIZE (Q9FR39), PROF6_HEVBR (Q9LEI8), PROFA_ORYSJ (Q9FUD1), 
PROFX_ORYSI (P83647), PROFX_ORYSJ (Q5VMJ3), PROF_ANACO  (Q94JN2), 
PROF_APIGR  (Q9XF37), PROF_ARAHY  (Q9SQI9), PROF_BETPN  (P25816), 
PROF_BOMMO  (Q68HB4), PROF_BRABE  (Q8T938), PROF_BRANA  (Q9FUB8), 
PROF_CANAX  (P53696), PROF_CAPAN  (Q93YI9), PROF_CHEAL  (Q84V37), 
PROF_CLYJA  (P18321), PROF_CROSA  (Q5EF31), PROF_CUCME  (Q5FX67), 
PROF_CWPXB  (Q77DS0), PROF_CWPXG  (Q80DT4), PROF_CYNDA  (O04725), 
PROF_DAUCA  (Q8SAE6), PROF_DROME  (P25843), PROF_ENTHI  (P49230), 
PROF_FRAAN  (P0C0Y3), PROF_HELAN  (O81982), PROF_HELCR  (P18320), 
PROF_LITCN  (Q941H7), PROF_MERAN  (O49894), PROF_MONPV  (Q8V4T7), 
PROF_MUSAC  (Q94JN3), PROF_PRUAV  (Q9XF39), PROF_PRUDU  (Q8GSL5), 
PROF_PRUPE  (Q8GT39), PROF_PYRCO  (Q9XF38), PROF_RABPU  (Q6RZE1), 
PROF_SCHPO  (P39825), PROF_SUBDO  (Q9U0E6), PROF_TETPY  (P23412), 
PROF_TRYBB  (Q26734), PROF_VACCA  (O57243), PROF_VACCC  (P68695), 
PROF_VACCT  (Q77TH1), PROF_VACCW  (Q76ZN5), PROF_VAR67  (P33828), 
PROF_YEAST  (P07274)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PROF2_CAEEL (Q20025), PROF3_BOVIN (Q32PB1), PROF3_CAEEL (Q21193), 
PROF3_HUMAN (P60673), PROF3_MOUSE (Q9DAD6), PROF3_WHEAT (P49234), 
PROF4_BOVIN (Q2NKT1), PROF4_HUMAN (Q8NHR9), PROF4_MOUSE (Q9D6I3), 
PROF_APIME  (Q6QEJ7), PROF_NAEGR  (Q6QNF8), PROF_PLABE  (B8QYR5), 
PROF_PLAF7  (Q8I2J4), PROF_PLAFX  (P86294)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
PROF_BETVU  (P85984)
False positive hits (sequences which do not belong to the set under consideration):
BIOF_PROMH  (B4ESU4), LCGA_LACLL  (P36961), YCF12_PSINU (Q8WI31), 
YECM_ECOLI  (P52007)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A0K; 1ACF; 1CQA; 1D1J; 1F2K; 1FIK; 1FIL; 1G5U; 1HLU; 1K0K; 1PFL; 1PLM; 1PNE; 1PRQ; 1YPR; 2ACG; 2BTF; 2PAV; 2PBD; 2PRF; 2V8C; 2V8F; 3CHW; 3D9Y; 3DAV; 3NUL; 3U4L; 3UB5;

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