Entry: PS00418

General information about the entry
Entry name POTEX_CARLAVIRUS_COAT
Accession number PS00418
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00346
Name and characterization of the entry
DescriptionPotexviruses and carlaviruses coat protein signature.
Pattern [RK]-[FYW]-A-[GAP]-F-D-x-F-x(2)-[LV]-x(3)-[GASTY]-[GASTV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 29 hits in 29 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 29 hits in 29 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CAPSD_ASPVP (Q64966), CAPSD_BOTVX (Q6YNQ5), CAPSD_CLBVS (Q91QZ1), 
CAPSD_CMVSI (Q00467), CAPSD_CYMV  (P16486), CAPSD_FXMV  (P22172), 
CAPSD_ICRSV (Q9QEE7), CAPSD_LVX   (P27334), CAPSD_NMV   (P15100), 
CAPSD_P1AMV (Q07506), CAPSD_PAMV  (P37993), CAPSD_PMV   (P16596), 
CAPSD_PVX   (P07699), CAPSD_PVXCP (P62406), CAPSD_PVXHB (Q07626), 
CAPSD_PVXU3 (P31798), CAPSD_PVXX3 (P17782), CAPSD_PVXXC (P10468), 
CAPSD_SHVX  (Q04572), CAPSD_SMYEA (P28899), CAPSD_WCMVM (P09502), 
CAPSD_WCMVO (P15406), COAT_CVB    (P37991), COAT_HELVS  (Q00556), 
COAT_LSV    (P27335), COAT_POPMV  (Q02106), COAT_PVMG   (Q01669), 
COAT_PVMR   (P17529), COAT_PVSP   (P16653)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 4DOX;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or