Entry: PS00434

General information about the entry
Entry name HSF_DOMAIN
Accession number PS00434
Entry type PATTERN
Date MAY-1991 (CREATED); NOV-1997 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00381
Name and characterization of the entry
DescriptionHSF-type DNA-binding domain signature.
Pattern L-x(3)-[FY]-K-H-x-N-x-[STAN]-S-F-[LIVM]-R-Q-L-[NH]-x-Y-x-[FYW]-[RKH]-K- [LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 68 hits in 68 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 68 hits in 68 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 86.08 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
HFA1A_ARATH (P41151), HFA1B_ARATH (O81821), HFA1D_ARATH (Q9LQM7), 
HFA1E_ARATH (Q9SCW5), HFA2A_ORYSJ (Q84MN7), HFA2B_ORYSJ (Q6VBB2), 
HFA2C_ORYSJ (Q338B0), HFA2D_ORYSJ (Q8H7Y6), HFA2E_ORYSJ (Q6F388), 
HFA4B_ORYSJ (Q94J16), HFA4C_ARATH (Q9FK72), HFA4D_ORYSJ (Q93VB5), 
HFA6A_ARATH (Q1PDN3), HFA6A_ORYSJ (Q5Z6A4), HFA6B_ARATH (Q9LUH8), 
HFA6B_ORYSJ (Q657C0), HFA7A_ARATH (Q9SV12), HFA7B_ARATH (Q9M1V5), 
HFB2A_ARATH (Q9SCW4), HFB2A_ORYSJ (Q7XRX3), HFB2B_ARATH (Q9T0D3), 
HFB2B_ORYSJ (Q6Z9C8), HFB2C_ORYSJ (Q652B0), HFB4A_ORYSJ (Q6Z9R8), 
HFB4B_ORYSJ (Q7XHZ0), HFB4C_ORYSJ (Q67U94), HFB4D_ORYSJ (Q10KX8), 
HFC1A_ORYSJ (Q6VBA4), HFC1B_ORYSJ (Q942D6), HFC2A_ORYSJ (Q6EUG4), 
HFC2B_ORYSJ (Q0DBL6), HSF1_BOVIN  (Q08DJ8), HSF1_CHICK  (P38529), 
HSF1_HUMAN  (Q00613), HSF1_MOUSE  (P38532), HSF24_SOLPE (P22335), 
HSF2_CHICK  (P38530), HSF2_HUMAN  (Q03933), HSF2_MOUSE  (P38533), 
HSF30_SOLPE (P41152), HSF3_CHICK  (P38531), HSF4_CANFA  (Q1HGE8), 
HSF4_HUMAN  (Q9ULV5), HSF4_MOUSE  (Q9R0L1), HSF8_SOLLC  (Q40152), 
HSF8_SOLPE  (P41153), HSFA1_ORYSJ (Q84T61), HSFA2_ARATH (O80982), 
HSFA3_ARATH (Q8GYY1), HSFA3_ORYSJ (Q6H6Q7), HSFA5_ARATH (Q94BZ5), 
HSFA5_ORYSJ (Q6K6S5), HSFA8_ARATH (Q9S7U5), HSFA9_ARATH (Q9LVW2), 
HSFA9_ORYSJ (Q10PR4), HSFB1_ORYSJ (Q67TP9), HSFB3_ARATH (O22230), 
HSFB4_ARATH (Q9C635), HSFC1_ARATH (Q9LV52), HSF_DROME   (P22813), 
HSF_KLULA   (P22121), HSF_SCHPO   (Q02953), HSF_XENLA   (P41154), 
HSF_YEAST   (P10961), MGA1_YEAST  (P53050), PRR1_SCHPO  (O14283), 
SFL1_YEAST  (P20134), SKN7_YEAST  (P38889)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
HFA4A_ARATH (O49403), HMS2_YEAST  (P47175), HSF3_MOUSE  (D0VYS2), 
HSF5_HUMAN  (Q4G112), HSF5_MOUSE  (Q5ND04), HSFB1_ARATH (Q96320), 
HSFX1_HUMAN (Q9UBD0), HSFY1_HUMAN (Q96LI6), HSF_ENCCU   (Q8SS62), 
HSF_ENTBH   (B7XIV9), HSF_NOSCE   (C4V6H6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1FBQ; 1FBS; 1FBU; 1FYK; 1FYL; 1FYM; 1HKS; 1HKT; 2HTS; 2LDU; 3HSF; 3HTS;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or