Entry: PS00451

General information about the entry
Entry name PATHOGENESIS_BETVI
Accession number PS00451
Entry type PATTERN
Date MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00437
Name and characterization of the entry
DescriptionPathogenesis-related proteins Bet v I family signature.
Pattern G-x(2)-[LIVMF]-x(4)-E-x(2,3)-[CSTAENV]-x(8,9)-[GNDS]-[GS](2)-[CS]-x(2)- [KT]-x(4)-[FY].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 45 hits in 45 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 43 hits in 43 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 9
  • Precision (true hits / (true hits + false positives)): 95.56 %
  • Recall (true hits / (true hits + false negatives)): 95.56 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ABR17_PEA   (Q06931), ABR18_PEA   (Q06930), ALL1_APIGR  (P49372), 
ALL2_APIGR  (P92918), BEV1A_BETPN (P15494), BEV1B_BETPN (P45431), 
BEV1C_BETPN (P43176), BEV1D_BETPN (P43177), BEV1E_BETPN (P43178), 
BEV1F_BETPN (P43179), BEV1G_BETPN (P43180), BEV1J_BETPN (P43183), 
BEV1K_BETPN (P43184), BEV1L_BETPN (P43185), BEV1M_BETPN (P43186), 
DAU1_DAUCA  (O04298), DRR1_PEA    (P13239), DRR3_PEA    (P14710), 
DRR4_PEA    (P27047), L18A_LUPLU  (P52778), L18B_LUPLU  (P52779), 
MAL11_MALDO (P43211), MAL12_MALDO (Q40280), MPAC1_CARBE (P38949), 
MPAC1_CORAV (Q08407), MPAC2_CARBE (P38950), MPAG1_ALNGL (P38948), 
PR11_PETCR  (P19417), PR13_PETCR  (P19418), PR1_ASPOF   (Q05736), 
PR1_MEDSA   (Q43560), PR1_PHAVU   (P25985), PR2_PETCR   (P27538), 
PR2_PHAVU   (P25986), PRS1_SOLTU  (P17641), PRS2_SOLTU  (P17642), 
PRU1_PRUAR  (O50001), PRU1_PRUAV  (O24248), PYRC1_PYRCO (O65200), 
RAP_TAROF   (O49065), RNS1_PANGI  (P80889), RNS2_PANGI  (P80890), 
SAM22_SOYBN (P26987)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
FRAA_FRAAN  (Q5ULZ4), KIRO_ACTDE  (P85524)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
DRR_PSEMZ   (P85900), PL1_LUPLU   (P83363), PL2_LUPLU   (P83364), 
PL3_LUPLU   (P83365), PL4_LUPLU   (P83366), PL5_LUPLU   (P83367), 
PL6_LUPLU   (P83368), PRP_CAPAA   (P86077), QUA1_QUEAL  (P85126)
False positive hits (sequences which do not belong to the set under consideration):
NEP1_NEPDI  (P69476), PLB1_MONDO  (Q06HQ7)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1B6F; 1BTV; 1BV1; 1E09; 1FM4; 1FSK; 1H2O; 1ICX; 1IFV; 1LLT; 1QMR; 2BK0; 2K7H; 2WQL; 4A80; 4A81; 4A83; 4A84; 4A85; 4A86; 4A87; 4A88; 4A8G; 4A8U; 4A8V;

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