Entry: PS00461

General information about the entry
Entry name 6PGD
Accession number PS00461
Entry type PATTERN
Date MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00390
Name and characterization of the entry
Description6-phosphogluconate dehydrogenase signature.
Pattern [LIVM]-x-[DG]-x(2)-[GAEHS]-[NQSD]-[KS]-G-[TE]-G-x-W.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 56 hits in 56 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 56 hits in 56 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.89 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
6PGD1_YEAST (P38720), 6PGD2_YEAST (P53319), 6PGD9_ECOLX (P37754), 
6PGDH_BACSU (P12013), 6PGD_AGGAC  (P70718), 6PGD_BACLI  (P52207), 
6PGD_BACSU  (P80859), 6PGD_BUCAI  (P57208), 6PGD_BUCAP  (Q9ZHD9), 
6PGD_BUCBP  (Q89AX5), 6PGD_CAEEL  (Q17761), 6PGD_CANAX  (O13287), 
6PGD_CERCA  (P41570), 6PGD_CHLMU  (Q9PKX7), 6PGD_CHLPN  (Q9Z8I3), 
6PGD_CHLTR  (O84066), 6PGD_CITAM  (P41581), 6PGD_CITDI  (P41582), 
6PGD_CITFR  (P41583), 6PGD_CUNEL  (O60037), 6PGD_DICDI  (Q8TA03), 
6PGD_DROME  (P41572), 6PGD_DROSI  (P41573), 6PGD_ECOLI  (P00350), 
6PGD_ESCVU  (P41574), 6PGD_HAEDU  (Q7VMX4), 6PGD_HAEIN  (P43774), 
6PGD_HUMAN  (P52209), 6PGD_KLEPN  (P41576), 6PGD_LACLA  (Q9CHU6), 
6PGD_LACLM  (P96789), 6PGD_MOUSE  (Q9DCD0), 6PGD_PIG    (P14332), 
6PGD_RAOPL  (P41575), 6PGD_RAOTE  (P41577), 6PGD_RAT    (P85968), 
6PGD_SALTY  (P14062), 6PGD_SCHPO  (P78812), 6PGD_SHEEP  (P00349), 
6PGD_SHIBO  (P41578), 6PGD_SHIDY  (P41579), 6PGD_SHIFL  (P37756), 
6PGD_SHISO  (P41580), 6PGD_STAAC  (Q5HFR2), 6PGD_STAAM  (Q931R3), 
6PGD_STAAN  (P63334), 6PGD_STAAR  (Q6GGI7), 6PGD_STAAS  (Q6G954), 
6PGD_STAAW  (P63335), 6PGD_STAEQ  (Q5HP42), 6PGD_STAES  (Q8CP47), 
6PGD_SYNE7  (P21577), 6PGD_SYNY3  (P52208), 6PGD_TREPA  (O83351), 
6PGD_TRYBB  (P31072), YQEC_BACSU  (P54448)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
6GPD3_ARATH (Q9FWA3), 6PGD1_ARATH (Q9SH69), 6PGD1_ORYSJ (Q9LI00), 
6PGD1_SPIOL (Q94KU1), 6PGD2_ARATH (Q9FFR3), 6PGD2_ORYSJ (Q2R480), 
6PGD2_SPIOL (Q94KU2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1PGJ; 1PGN; 1PGO; 1PGP; 1PGQ; 2IYO; 2IYP; 2IZ0; 2IZ1; 2JKV; 2P4Q; 2PGD; 2ZYA; 2ZYD; 3FWN; 4GWG; 4GWK;

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