Home ScanProsite ProRule Documents Downloads Links Funding
Entry: PS00508
General information about the entry
Entry nameNI_HGENASE_L_2
Accession numberPS00508
Entry typePATTERN
DateMAY-1991 (CREATED); JAN-2008 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00400
Name and characterization of the entry
DescriptionNickel-dependent hydrogenases large subunit signature 2.
Pattern[FY]-D-[PI]-[CU]-[LIMAV]-[ASG]-C-x(2,3)-H.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 30 hits in 30 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 30 hits in 30 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 83.33 %
Comments
  • Taxonomic range: Archaebacteria, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 4,nickel
  • `Interesting' site in the pattern: 7,nickel
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
FRHA_METBF  (P80489), FRHA_METJA  (Q60338), FRHA_METTH  (P19496), 
FRHA_METVO  (Q00390), HOXH_CUPNH  (P22320), MBHL_ALCHY  (P33374), 
MBHL_AZOCH  (P18191), MBHL_AZOVI  (P21949), MBHL_BRAJA  (P12636), 
MBHL_CITFR  (Q46046), MBHL_CUPNH  (P31891), MBHL_ECOLI  (P0ACD8), 
MBHL_OLICO  (O33406), MBHL_RHILV  (P18636), MBHL_RHOCA  (P15284), 
MBHL_RUBGE  (P17632), MBHL_SHIFL  (P0ACD9), MBHL_WOLSU  (P31883), 
MBHM_ECO57  (P0ACE1), MBHM_ECOLI  (P0ACE0), MBHM_SHIFL  (P0ACE2), 
MVHA_METFE  (Q49179), MVHA_METTH  (Q50783), MVHA_METTM  (P60227), 
PHNL_DESFR  (P18188), PHNL_DESGI  (P12944), PHNL_DESVM  (P21852), 
PHSL_DESBA  (P13065), VHCA_METVO  (Q00404), VHUU_METKA  (P0C1V6)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
VHCA_ARCPA  (P84625), VHUA_METJA  (Q58592), VHUA_METVO  (Q00407), 
VHUU_METJA  (P81335), VHUU_METMP  (P0C1V5), VHUU_METVO  (Q00410)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
HOXH_RHOOP  (P22661), PHSL_DESNO  (P13066)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1FRF; 1FRV; 1H2A; 1H2R; 1UBH; 1UBJ; 1UBK; 1UBL; 1UBM; 1UBO; 1UBR; 1UBT; 1UBU; 1YQ9; 1YQW; 1YRQ; 2FRV; 3CUR; 3H3X; 3RGW;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or