Entry: PS00508

General information about the entry

Entry name [info] NI_HGENASE_L_2
Accession [info] PS00508
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); JAN-2008 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00400

Name and characterization of the entry

Description [info] Nickel-dependent hydrogenases large subunit signature 2.
Pattern [info]
[FY]-D-[PI]-[CU]-[LIMAV]-[ASG]-C-x(2,3)-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.21 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] nickel at position 4
Site [info] nickel at position 7
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

FRHA_METBF  (P80489    ), FRHA_METJA  (Q60338    ), FRHA_METTH  (P19496    ), 
FRHA_METVO  (Q00390    ), HOXH_CUPNH  (P22320    ), HYD1A_PYRFU (E7FI44    ), 
HYD2A_PYRFU (E7FHC4    ), MBHL_ALCHY  (P33374    ), MBHL_AZOCH  (P18191    ), 
MBHL_AZOVI  (P21949    ), MBHL_BRADU  (P12636    ), MBHL_CITFR  (Q46046    ), 
MBHL_CUPNH  (P31891    ), MBHL_ECOLI  (P0ACD8    ), MBHL_OLICO  (O33406    ), 
MBHL_RHILV  (P18636    ), MBHL_RHOCA  (P15284    ), MBHL_RUBGE  (P17632    ), 
MBHL_SHIFL  (P0ACD9    ), MBHL_WOLSU  (P31883    ), MBHM_ECO57  (P0ACE1    ), 
MBHM_ECOLI  (P0ACE0    ), MBHM_SHIFL  (P0ACE2    ), MVHA_METFE  (Q49179    ), 
MVHA_METTH  (Q50783    ), MVHA_METTM  (P60227    ), PHNL_DESFR  (P18188    ), 
PHNL_DESGI  (P12944    ), PHNL_DESVM  (P21852    ), PHSL_DESBA  (P13065    ), 
VHCA_METVO  (Q00404    ), VHUU_METKA  (P0C1V6    )
» more

UniProtKB/Swiss-Prot
False negative sequences
6 sequences

VHCA_ARCPA  (P84625    ), VHUA_METJA  (Q58592    ), VHUA_METVO  (Q00407    ), 
VHUU_METJA  (P81335    ), VHUU_METMP  (P0C1V5    ), VHUU_METVO  (Q00410    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

HOXH_RHOOP  (P22661    ), PHSL_DESNO  (P13066    )

		
PDB
[Detailed view]
39 PDB

1FRF; 1FRV; 1H2A; 1H2R; 1UBH; 1UBJ; 1UBK; 1UBL; 1UBM; 1UBO; 1UBR; 1UBT; 1UBU; 1YQ9; 1YQW; 1YRQ; 2FRV; 3CUR; 3H3X; 3RGW; 3UQY; 3USC; 3USE; 4GD3; 4IUB; 4IUC; 4TTT; 4U9H; 4U9I; 4UCQ; 4UCW; 4UCX; 4UE3; 4UPE; 4UPV; 4URH; 5A4F; 5A4M; 5D51
» more

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