Entry: PS00543

General information about the entry
Entry name HLYD_FAMILY
Accession number PS00543
Entry type PATTERN
Date DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00469
Name and characterization of the entry
DescriptionHlyD family secretion proteins signature.
Pattern [LIVM]-x(2)-G-[LM]-x(3)-[STGAV]-x-[LIVMT]-x-[LIVMTK]-[GE]-x-[KR]-x- [LIVMFYW](2)-x-[LIVMFYW](2)-[LIVMFYWK].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 17 hits in 17 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 17 hits in 17 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 80.95 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
APRE_PSEAE  (Q03025), CVAA_ECOLX  (P22519), CYAD_BORP1  (J7QCA7), 
CYAD_BORPE  (P0DKX9), HLYDC_ECOLX (P09986), HLYDP_ECOLX (P06739), 
HLYD_AGGAC  (P18790), HLYD_PASHA  (P16534), HLYD_PASSP  (P55125), 
LCNDL_LACLA (Q9CJB7), LCND_LACLC  (P0A3G6), LCND_LACLL  (P0A3G5), 
MCHE_ECOLX  (Q9EXN6), MESE_LEUME  (Q10419), PRTE_ERWCH  (P23597), 
RTX1D_ACTPL (P26761), RTX3D_ACTPL (Q08633)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
EMRA_ECOLI  (P27303), EMRA_HAEIN  (P44928), EMRK_ECOLI  (P52599), 
PRSE_RHIME  (Q7ANN5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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