PROSITE entry PS00543
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General information about the entry
Entry name [info] | HLYD_FAMILY |
Accession [info] | PS00543 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00469 |
Name and characterization of the entry
Description [info] | HlyD family secretion proteins signature. |
Pattern [info] |
[LIVM]-x(2)-G-[LM]-x(3)-[STGAV]-x-[LIVMT]-x-[LIVMTK]-[GE]-x-[KR]-x- [LIVMFYW](2)-x-[LIVMFYW](2)-[LIVMFYWK]. |
Numerical results [info]
Total number of hits | 17 in 17 different sequences |
Number of true positive hits | 17 in 17 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 6 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 73.91 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
17 sequences
APRE_PSEAE (Q03025), CVAA_ECOLX (P22519), CYAD_BORP1 (J7QCA7), CYAD_BORPE (P0DKX9), HLYDC_ECOLX (P09986), HLYDP_ECOLX (P06739), HLYD_MANHA (P16534), HLYD_PASSP (P55125), LCNDL_LACLA (Q9CJB7), LCND_LACLC (P0A3G6), LCND_LACLL (P0A3G5), LTXD_AGGAC (P18790), MCHE_ECOLX (Q9EXN6), MESE_LEUME (Q10419), PRTE_DICCH (P23597), RTX1D_ACTPL (P26761), RTX3D_ACTPL (Q08633)» more
|
UniProtKB/Swiss-Prot False negative sequences |
6 sequences
EMRA_ACIBT (P0DPR6), EMRA_ECOLI (P27303), EMRA_HAEIN (P44928), EMRK_ECOLI (P52599), FARA_NEIGO (Q9RQ30), PRSE_RHIME (Q7ANN5)» more |