Entry: PS00550

General information about the entry
Entry name HEMERYTHRINS
Accession number PS00550
Entry type PATTERN
Date DEC-1991 (CREATED); MAY-2002 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00476
Name and characterization of the entry
DescriptionHemerythrin family signature.
Pattern H-F-x(2)-[EQ]-[ENQ]-x(2)-[LMF]-x(4,7)-[FY]-x(5,6)-H-x(3)-[HR].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 37 hits in 37 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 37 hits in 37 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.87 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,iron
  • `Interesting' site in the pattern: 4,iron
  • `Interesting' site in the pattern: 11,iron
  • `Interesting' site in the pattern: 13,iron
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
HEMT1_GOLVU (Q5K472), HEMT1_PHAGO (P27686), HEMT2_GOLVU (Q5K471), 
HEMT2_HEDDI (P80255), HEMTA_LINRE (P23543), HEMTA_LINUN (P22764), 
HEMTA_SIPNU (Q5K486), HEMTB_AQUAE (O67614), HEMTB_CAMJ8 (A8FK31), 
HEMTB_CAMJE (Q9PIQ3), HEMTB_CAMJJ (A1VXW3), HEMTB_CLOAB (Q97MX1), 
HEMTB_LINRE (P23544), HEMTB_LINUN (P22765), HEMTB_METCA (Q60AX2), 
HEMTB_METJA (Q58157), HEMTB_PSEA7 (A6V7B8), HEMTB_PSEA8 (B7UV48), 
HEMTB_PSEAB (Q02KG3), HEMTB_PSEAE (Q9I352), HEMTB_RALSO (Q8Y1B3), 
HEMTB_SIPNU (Q5K474), HEMTB_STRM5 (B4SQI3), HEMTB_STRMK (B2FJ68), 
HEMTL_NAEFO (Q9NH76), HEMTL_NAEGR (Q6B0K8), HEMTM_HEDDI (P22761), 
HEMTM_RIFPA (A8STG1), HEMTM_SIPNU (Q5K473), HEMTM_THEHE (P02247), 
HEMTM_THETS (Q9GYZ9), HEMTN_HIRME (Q674M7), HEMT_PARUS  (Q6W3Z9), 
HEMT_PHAGO  (P02244), HEMT_SIPCU  (P22766), HEMT_THEDY  (P02246), 
HEMT_THEHE  (P02245)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
HEMTL_NEMVE (A7T0T1), NICK_NOSS1  (Q8YS92)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
HEMT2_PHAGO (P27687), HEMTO_THETS (P80155)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A7D; 1A7E; 1HMD; 1HMO; 1HRB; 1I4Y; 1I4Z; 2HMQ; 2HMZ; 2MHR;

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