Entry: PS00558

General information about the entry
Entry name EUKARYOTIC_PORIN
Accession number PS00558
Entry type PATTERN
Date DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00483
Name and characterization of the entry
DescriptionEukaryotic mitochondrial porin signature.
Pattern [YH]-x(2)-D-[SPCAD]-x-[STA]-x(3)-[TAG]-[KR]-[LIVMF]-[DNSTA]-[DNS]-x(4)- [GSTAN]-[LIVMA]-x-[LIVMY].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 36 hits in 36 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 36 hits in 36 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 8
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 81.82 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
VDAC1_ARATH (Q9SRH5), VDAC1_BOVIN (P45879), VDAC1_HUMAN (P21796), 
VDAC1_MOUSE (Q60932), VDAC1_ORYSJ (Q6K548), VDAC1_PIG   (Q9MZ16), 
VDAC1_RABIT (Q9TT15), VDAC1_RAT   (Q9Z2L0), VDAC1_SOLTU (P42055), 
VDAC1_WHEAT (P46274), VDAC1_YEAST (P04840), VDAC2_BOVIN (P68002), 
VDAC2_HUMAN (P45880), VDAC2_MELGA (P82013), VDAC2_MOUSE (Q60930), 
VDAC2_PIG   (Q9MZ15), VDAC2_RABIT (P68003), VDAC2_RAT   (P81155), 
VDAC2_SOLTU (P42056), VDAC2_XENLA (P81004), VDAC2_YEAST (P40478), 
VDAC3_ARATH (Q9SMX3), VDAC3_BOVIN (Q9MZ13), VDAC3_HUMAN (Q9Y277), 
VDAC3_MOUSE (Q60931), VDAC3_ORYSJ (Q7F4F8), VDAC3_PIG   (Q29380), 
VDAC3_PONAB (Q5R7V4), VDAC3_RABIT (Q9TT13), VDAC3_RAT   (Q9R1Z0), 
VDAC5_ORYSJ (Q84P97), VDAC_DICDI  (Q01501), VDAC_DROME  (Q94920), 
VDAC_MAIZE  (P42057), VDAC_NEUCR  (P07144), VDAC_PEA    (P42054)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
VDAC2_ARATH (Q9FJX3), VDAC2_ORYSJ (Q6L5I5), VDAC4_ARATH (Q9FKM2), 
VDAC4_ORYSJ (Q0JJV1), VDAC5_ARATH (Q9M2W6), VDAC6_ORYSJ (Q10S27), 
VDAC_CAEEL  (Q21752), VDAC_SCHPO  (Q9P544)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
VDAC2_MESAU (P86223), VDAC_DORPE  (P82945)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 2JK4; 2K4T; 3EMN;

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