Entry: PS00558

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General information about the entry

Entry name [info] EUKARYOTIC_PORIN
Accession [info] PS00558
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00483

Name and characterization of the entry

Description [info] Eukaryotic mitochondrial porin signature.
Pattern [info]
[YH]-x(2)-D-[SPCAD]-x-[STA]-x(3)-[TAG]-[KR]-[LIVMF]-[DNSTA]-[DNS]-x(4)-
[GSTAN]-[LIVMA]-x-[LIVMY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 36 in 36 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 8
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 81.82 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
36 sequences

VDAC1_ARATH (Q9SRH5), VDAC1_BOVIN (P45879), VDAC1_HUMAN (P21796), 
VDAC1_MOUSE (Q60932), VDAC1_ORYSJ (Q6K548), VDAC1_PIG   (Q9MZ16), 
VDAC1_RABIT (Q9TT15), VDAC1_RAT   (Q9Z2L0), VDAC1_SOLTU (P42055), 
VDAC1_WHEAT (P46274), VDAC1_YEAST (P04840), VDAC2_BOVIN (P68002), 
VDAC2_HUMAN (P45880), VDAC2_MELGA (P82013), VDAC2_MOUSE (Q60930), 
VDAC2_PIG   (Q9MZ15), VDAC2_RABIT (P68003), VDAC2_RAT   (P81155), 
VDAC2_SOLTU (P42056), VDAC2_XENLA (P81004), VDAC2_YEAST (P40478), 
VDAC3_ARATH (Q9SMX3), VDAC3_BOVIN (Q9MZ13), VDAC3_HUMAN (Q9Y277), 
VDAC3_MOUSE (Q60931), VDAC3_ORYSJ (Q7F4F8), VDAC3_PIG   (Q29380), 
VDAC3_PONAB (Q5R7V4), VDAC3_RABIT (Q9TT13), VDAC3_RAT   (Q9R1Z0), 
VDAC5_ORYSJ (Q84P97), VDAC_DICDI  (Q01501), VDAC_DROME  (Q94920), 
VDAC_MAIZE  (P42057), VDAC_NEUCR  (P07144), VDAC_PEA    (P42054)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

VDAC2_ARATH (Q9FJX3), VDAC2_ORYSJ (Q6L5I5), VDAC4_ARATH (Q9FKM2), 
VDAC4_ORYSJ (Q0JJV1), VDAC5_ARATH (Q9M2W6), VDAC6_ORYSJ (Q10S27), 
VDAC_CAEEL  (Q21752), VDAC_SCHPO  (Q9P544)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

VDAC2_MESAU (P86223), VDAC_DORPE  (P82945)

		
PDB
[Detailed view]
4 PDB

2JK4; 2K4T; 3EMN; 4C69

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