Entry: PS00558

General information about the entry

Entry name [info] EUKARYOTIC_PORIN
Accession [info] PS00558
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00483

Name and characterization of the entry

Description [info] Eukaryotic mitochondrial porin signature.
Pattern [info]
[YH]-x(2)-D-[SPCAD]-x-[STA]-x(3)-[TAG]-[KR]-[LIVMF]-[DNSTA]-[DNS]-x(4)-
[GSTAN]-[LIVMA]-x-[LIVMY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 36 in 36 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 81.82 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
36 sequences

VDAC1_ARATH (Q9SRH5), VDAC1_BOVIN (P45879), VDAC1_HUMAN (P21796), 
VDAC1_MOUSE (Q60932), VDAC1_ORYSJ (Q6K548), VDAC1_PIG   (Q9MZ16), 
VDAC1_RABIT (Q9TT15), VDAC1_RAT   (Q9Z2L0), VDAC1_SOLTU (P42055), 
VDAC1_WHEAT (P46274), VDAC1_YEAST (P04840), VDAC2_BOVIN (P68002), 
VDAC2_HUMAN (P45880), VDAC2_MELGA (P82013), VDAC2_MOUSE (Q60930), 
VDAC2_PIG   (Q9MZ15), VDAC2_RABIT (P68003), VDAC2_RAT   (P81155), 
VDAC2_SOLTU (P42056), VDAC2_XENLA (P81004), VDAC2_YEAST (P40478), 
VDAC3_ARATH (Q9SMX3), VDAC3_BOVIN (Q9MZ13), VDAC3_HUMAN (Q9Y277), 
VDAC3_MOUSE (Q60931), VDAC3_ORYSJ (Q7F4F8), VDAC3_PIG   (Q29380), 
VDAC3_PONAB (Q5R7V4), VDAC3_RABIT (Q9TT13), VDAC3_RAT   (Q9R1Z0), 
VDAC5_ORYSJ (Q84P97), VDAC_DICDI  (Q01501), VDAC_DROME  (Q94920), 
VDAC_MAIZE  (P42057), VDAC_NEUCR  (P07144), VDAC_PEA    (P42054)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

VDAC2_ARATH (Q9FJX3), VDAC2_ORYSJ (Q6L5I5), VDAC4_ARATH (Q9FKM2), 
VDAC4_ORYSJ (Q0JJV1), VDAC5_ARATH (Q9M2W6), VDAC6_ORYSJ (Q10S27), 
VDAC_CAEEL  (Q21752), VDAC_SCHPO  (Q9P544)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

VDAC2_MESAU (P86223), VDAC_DORPE  (P82945)

		
PDB
[Detailed view]
4 PDB

2JK4; 2K4T; 3EMN; 4C69

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