Entry: PS00558

General information about the entry

Entry name [info] EUKARYOTIC_PORIN
Accession [info] PS00558
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED; 01-JUL-1999 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00483

Name and characterization of the entry

Description [info] Eukaryotic mitochondrial porin signature.
Pattern [info] 
[YH]-x(2)-D-[SPCAD]-x-[STA]-x(3)-[TAG]-[KR]-[LIVMF]-[DNSTA]-[DNS]-x(4)-
[GSTAN]-[LIVMA]-x-[LIVMY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 36 in 36 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 81.82 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 36 sequences 

VDAC1_ARATH (Q9SRH5    ), VDAC1_BOVIN (P45879    ), VDAC1_HUMAN (P21796    ), 

VDAC1_MOUSE (Q60932    ), VDAC1_ORYSJ (Q6K548    ), VDAC1_PIG   (Q9MZ16    ), 
VDAC1_RABIT (Q9TT15    ), VDAC1_RAT   (Q9Z2L0    ), VDAC1_SOLTU (P42055    ), 
VDAC1_WHEAT (P46274    ), VDAC1_YEAST (P04840    ), VDAC2_BOVIN (P68002    ), 
VDAC2_HUMAN (P45880    ), VDAC2_MELGA (P82013    ), VDAC2_MOUSE (Q60930    ), 
VDAC2_PIG   (Q9MZ15    ), VDAC2_RABIT (P68003    ), VDAC2_RAT   (P81155    ), 
VDAC2_SOLTU (P42056    ), VDAC2_XENLA (P81004    ), VDAC2_YEAST (P40478    ), 
VDAC3_ARATH (Q9SMX3    ), VDAC3_BOVIN (Q9MZ13    ), VDAC3_HUMAN (Q9Y277    ), 
VDAC3_MOUSE (Q60931    ), VDAC3_ORYSJ (Q7F4F8    ), VDAC3_PIG   (Q29380    ), 
VDAC3_PONAB (Q5R7V4    ), VDAC3_RABIT (Q9TT13    ), VDAC3_RAT   (Q9R1Z0    ), 
VDAC5_ORYSJ (Q84P97    ), VDAC_DICDI  (Q01501    ), VDAC_DROME  (Q94920    ), 
VDAC_MAIZE  (P42057    ), VDAC_NEUCR  (P07144    ), VDAC_PEA    (P42054    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 8 sequences 

VDAC2_ARATH (Q9FJX3    ), VDAC2_ORYSJ (Q6L5I5    ), VDAC4_ARATH (Q9FKM2    ), 

VDAC4_ORYSJ (Q0JJV1    ), VDAC5_ARATH (Q9M2W6    ), VDAC6_ORYSJ (Q10S27    ), 
VDAC_CAEEL  (Q21752    ), VDAC_SCHPO  (Q9P544    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

VDAC2_MESAU (P86223    ), VDAC_DORPE  (P82945    )


				
	

	

		PDB
[Detailed view]		
		
			5 PDB
			


			2JK4; 2K4T; 3EMN; 4C69; 5JDP
				
	





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