Entry: PS00559

General information about the entry
Entry name MOLYBDOPTERIN_EUK
Accession number PS00559
Entry type PATTERN
Date DEC-1991 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00484
Name and characterization of the entry
DescriptionEukaryotic molybdopterin oxidoreductases signature.
Pattern [GA]-{A}-x(2)-[KRNQHT]-x(11,14)-[LIVMFYWS]-x(3)-{V}-{GK}-x(3)-[LIVMF]-x- C-x(2)-[DEN]-R-x(2)-[DE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 58 hits in 58 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 52 hits in 52 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 6 hits in 6 different sequences
  • Number of known missed hits: 12
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 4
  • Precision (true hits / (true hits + false positives)): 89.66 %
  • Recall (true hits / (true hits + false negatives)): 81.25 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ADO_BOVIN   (P48034), ADO_HUMAN   (Q06278), ADO_MACFA   (Q5FB27), 
ADO_MOUSE   (O54754), ADO_RABIT   (P80456), ADO_RAT     (Q9Z0U5), 
NIA1_ARATH  (P11832), NIA1_BRANA  (P39867), NIA1_HORVU  (P27967), 
NIA1_ORYSJ  (P16081), NIA1_PHAVU  (P39865), NIA1_SOYBN  (P54233), 
NIA1_TOBAC  (P11605), NIA2_ARATH  (P11035), NIA2_BRANA  (P39868), 
NIA2_HORVU  (P27969), NIA2_PHAVU  (P39866), NIA2_SOYBN  (P39870), 
NIA2_TOBAC  (P08509), NIA3_MAIZE  (P49102), NIA7_HORVU  (P27968), 
NIA_ASPNG   (P36858), NIA_BEABA   (P43100), NIA_BETPN   (P27783), 
NIA_CICIN   (P43101), NIA_CUCMA   (P17569), NIA_EMENI   (P22945), 
NIA_FUSOX   (P39863), NIA_LEPMC   (P36842), NIA_LOTJA   (P39869), 
NIA_NEUCR   (P08619), NIA_PETHY   (P36859), NIA_PICAN   (P49050), 
NIA_SOLLC   (P17570), NIA_SPIOL   (P23312), NIA_USTMA   (Q05531), 
NIA_VOLCA   (P36841), SUOX_CHICK  (P07850), SUOX_HUMAN  (P51687), 
SUOX_MACFA  (Q60HD0), SUOX_MOUSE  (Q8R086), SUOX_RAT    (Q07116), 
XDH_BOVIN   (P80457), XDH_CALVI   (P08793), XDH_CHICK   (P47990), 
XDH_DROME   (P10351), XDH_DROPS   (P22811), XDH_DROSU   (P91711), 
XDH_FELCA   (Q9MYW6), XDH_HUMAN   (P47989), XDH_MOUSE   (Q00519), 
XDH_RAT     (P22985)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ALDO1_ARATH (Q7G193), ALDO2_ARATH (Q7G192), ALDO3_ARATH (Q7G9P4), 
ALDO4_ARATH (Q7G191), NIA_PHYIN   (P39864), SUOX_ARATH  (Q9S850), 
SUOX_DROME  (Q9VWP4), XDH1_ARATH  (Q8GUQ8), XDH2_ARATH  (F4JLI5), 
XDH_DICDI   (Q54FB7), XDH_EMENI   (Q12553), XDH_ORYSJ   (Q6AUV1)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
NIA1_MAIZE  (P17571), NIA2_MAIZE  (P39871), NIA_CHLVU   (Q01170), 
NIA_LOTTE   (P39882)
False positive hits (sequences which do not belong to the set under consideration):
B2L14_RAT   (Q6AYK4), CAPSD_TOBSV (P03598), EPOR_CANFA  (Q2KL21), 
GREB1_MOUSE (Q3UHK3), PCM1_HUMAN  (Q15154), Y5900_ARATH (Q9FID8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1FIQ; 1FO4; 1N5X; 1V97; 1VDV; 1WYG; 2A9D; 2BIH; 2BII; 2CKJ; 2E1Q; 2E3T; 3AM9; 3AMZ; 3AN1; 3AX7; 3AX9; 3B9J; 3BDJ; 3ETR; 3EUB; 3NRZ; 3NS1; 3NVV; 3NVW; 3NVY; 3NVZ; 3SR6; 3UNA; 3UNC; 3UNI;

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