Entry: PS00588

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General information about the entry

Entry name [info] FLAGELLA_BB_ROD
Accession [info] PS00588
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00508

Name and characterization of the entry

Description [info] Flagella basal body rod proteins signature.
Pattern [info]
[GTARYQ]-x-{R}-x(7)-[LIVMYSTA](2)-[GSTA]-[STADEN]-N-[LIVM]-[SAN]-N-x-
[SADENFR]-[STV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 76 in 76 different sequences
Number of true positive hits 72 in 72 different sequences
Number of 'unknown' hits
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 12
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.74 %
Recall (true positives / (true positives + false negatives)) 85.71 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
72 sequences

FLA1_BORBU  (P11089), FLGB_AERHH  (A0KM45), FLGB_AERHY  (Q8GLP8), 
FLGB_AGRT5  (Q44335), FLGB_BACSU  (P24500), FLGB_BORBU  (P52608), 
FLGB_BORHE  (P70910), FLGB_BUCAI  (P57419), FLGB_ECOL6  (P0ABX0), 
FLGB_ECOLI  (P0ABW9), FLGB_PROMH  (B4EYN9), FLGB_PROMI  (P96972), 
FLGB_RHOS1  (A3PKG3), FLGB_RHOS4  (Q3J1S6), FLGB_RHOSH  (Q8VLR6), 
FLGB_RHOSK  (B9KJG2), FLGB_SALTY  (P16437), FLGB_SHIFL  (P0ABX1), 
FLGB_YEREN  (Q56893), FLGB_YERRU  (C8BKB7), FLGC_AGRT5  (Q44336), 
FLGC_AQUAE  (O67243), FLGC_BACSU  (P24501), FLGC_BORBU  (Q57466), 
FLGC_BORHE  (P70911), FLGC_BUCAI  (P57420), FLGC_BUCAP  (Q8K9K8), 
FLGC_ECO57  (P0ABX4), FLGC_ECOL6  (P0ABX3), FLGC_ECOLI  (P0ABX2), 
FLGC_RHIME  (Q52944), FLGC_SALTI  (P0A1I8), FLGC_SALTY  (P0A1I7), 
FLGC_YEREN  (Q56894), FLGE_AQUAE  (O67711), FLGE_BORBU  (Q44767), 
FLGE_BRUAB  (O52070), FLGE_BRUME  (Q8YDL6), FLGE_BRUSU  (Q8FUS9), 
FLGE_BUCAI  (P57422), FLGE_BUCAP  (Q8K9K6), FLGE_CAUCR  (P35806), 
FLGE_ECOLI  (P75937), FLGE_RHIME  (Q9X5Y0), FLGE_SALTI  (P0A1J2), 
FLGE_SALTY  (P0A1J1), FLGE_TREPA  (O07884), FLGE_TREPH  (Q56326), 
FLGF_BUCAI  (P57423), FLGF_BUCAP  (Q8K9K5), FLGF_CAUCR  (Q06171), 
FLGF_ECOLI  (P75938), FLGF_RHILO  (Q98HE3), FLGF_SALTY  (P16323), 
FLGG_AGRT5  (Q44338), FLGG_BACSU  (P23446), FLGG_BORBU  (O51715), 
FLGG_BUCAI  (P57424), FLGG_BUCAP  (Q8K9K4), FLGG_BUCBP  (Q89AH7), 
FLGG_CAUCR  (Q06172), FLGG_ECO57  (P0ABX7), FLGG_ECOL6  (P0ABX6), 
FLGG_ECOLI  (P0ABX5), FLGG_RHIME  (Q52946), FLGG_SALTI  (P0A1J4), 
FLGG_SALTY  (P0A1J3), FLGK_BACSU  (P39810), FLGK_SALTI  (P0A1J6), 
FLGK_SALTY  (P0A1J5), FLHO_BACSU  (P39752), FLHP_BACSU  (P39753)
» More

UniProtKB/Swiss-Prot
False negative sequences
12 sequences

FLGB_AQUAE  (O67244), FLGB_BUCAP  (Q8K9K9), FLGB_BUCBP  (Q89AI0), 
FLGC_BUCBP  (Q89AH9), FLGE_HELPJ  (Q9ZKY0), FLGE_HELPY  (P50610), 
FLGF_BUCBP  (Q89AH8), FLGF_RHIME  (O54248), FLGK_BORBU  (P70859), 
FLGK_BUCAI  (P57428), FLGK_BUCAP  (Q8K9K0), FLGK_ECOLI  (P33235)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

FLGE_HELMU  (P50611)

		
UniProtKB/Swiss-Prot
False positive sequences
4 sequences

C3H38_ARATH (Q9LIH5), LOLA5_DROME (Q9V5M6), SCR_PEA     (Q9AVK4), 
TAF12_SCHPO (O13722)
» More


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