Entry: PS00588

General information about the entry
Entry name FLAGELLA_BB_ROD
Accession number PS00588
Entry type PATTERN
Date DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00508
Name and characterization of the entry
DescriptionFlagella basal body rod proteins signature.
Pattern [GTARYQ]-x-{R}-x(7)-[LIVMYSTA](2)-[GSTA]-[STADEN]-N-[LIVM]-[SAN]-N-x- [SADENFR]-[STV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 76 hits in 76 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 72 hits in 72 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 12
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 94.74 %
  • Recall (true hits / (true hits + false negatives)): 85.71 %
Comments
  • Taxonomic range: Bacteriophages, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
FLA1_BORBU  (P11089), FLGB_AERHH  (A0KM45), FLGB_AERHY  (Q8GLP8), 
FLGB_AGRT5  (Q44335), FLGB_BACSU  (P24500), FLGB_BORBU  (P52608), 
FLGB_BORHE  (P70910), FLGB_BUCAI  (P57419), FLGB_ECOL6  (P0ABX0), 
FLGB_ECOLI  (P0ABW9), FLGB_PROMH  (B4EYN9), FLGB_PROMI  (P96972), 
FLGB_RHOS1  (A3PKG3), FLGB_RHOS4  (Q3J1S6), FLGB_RHOSH  (Q8VLR6), 
FLGB_RHOSK  (B9KJG2), FLGB_SALTY  (P16437), FLGB_SHIFL  (P0ABX1), 
FLGB_YEREN  (Q56893), FLGB_YERRU  (C8BKB7), FLGC_AGRT5  (Q44336), 
FLGC_AQUAE  (O67243), FLGC_BACSU  (P24501), FLGC_BORBU  (Q57466), 
FLGC_BORHE  (P70911), FLGC_BUCAI  (P57420), FLGC_BUCAP  (Q8K9K8), 
FLGC_ECO57  (P0ABX4), FLGC_ECOL6  (P0ABX3), FLGC_ECOLI  (P0ABX2), 
FLGC_RHIME  (Q52944), FLGC_SALTI  (P0A1I8), FLGC_SALTY  (P0A1I7), 
FLGC_YEREN  (Q56894), FLGE_AQUAE  (O67711), FLGE_BORBU  (Q44767), 
FLGE_BRUAB  (O52070), FLGE_BRUME  (Q8YDL6), FLGE_BRUSU  (Q8FUS9), 
FLGE_BUCAI  (P57422), FLGE_BUCAP  (Q8K9K6), FLGE_CAUCR  (P35806), 
FLGE_ECOLI  (P75937), FLGE_RHIME  (Q9X5Y0), FLGE_SALTI  (P0A1J2), 
FLGE_SALTY  (P0A1J1), FLGE_TREPA  (O07884), FLGE_TREPH  (Q56326), 
FLGF_BUCAI  (P57423), FLGF_BUCAP  (Q8K9K5), FLGF_CAUCR  (Q06171), 
FLGF_ECOLI  (P75938), FLGF_RHILO  (Q98HE3), FLGF_SALTY  (P16323), 
FLGG_AGRT5  (Q44338), FLGG_BACSU  (P23446), FLGG_BORBU  (O51715), 
FLGG_BUCAI  (P57424), FLGG_BUCAP  (Q8K9K4), FLGG_BUCBP  (Q89AH7), 
FLGG_CAUCR  (Q06172), FLGG_ECO57  (P0ABX7), FLGG_ECOL6  (P0ABX6), 
FLGG_ECOLI  (P0ABX5), FLGG_RHIME  (Q52946), FLGG_SALTI  (P0A1J4), 
FLGG_SALTY  (P0A1J3), FLGK_BACSU  (P39810), FLGK_SALTI  (P0A1J6), 
FLGK_SALTY  (P0A1J5), FLHO_BACSU  (P39752), FLHP_BACSU  (P39753)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
FLGB_AQUAE  (O67244), FLGB_BUCAP  (Q8K9K9), FLGB_BUCBP  (Q89AI0), 
FLGC_BUCBP  (Q89AH9), FLGE_HELPJ  (Q9ZKY0), FLGE_HELPY  (P50610), 
FLGF_BUCBP  (Q89AH8), FLGF_RHIME  (O54248), FLGK_BORBU  (P70859), 
FLGK_BUCAI  (P57428), FLGK_BUCAP  (Q8K9K0), FLGK_ECOLI  (P33235)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
FLGE_HELMU  (P50611)
False positive hits (sequences which do not belong to the set under consideration):
C3H38_ARATH (Q9LIH5), LOLA5_DROME (Q9V5M6), SCR_PEA     (Q9AVK4), 
TAF12_SCHPO (O13722)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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