Entry: PS00588

General information about the entry

Entry name [info] FLAGELLA_BB_ROD
Accession [info] PS00588
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED; 01-DEC-2004 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00508

Name and characterization of the entry

Description [info] Flagella basal body rod proteins signature.
Pattern [info] 
[GTARYQ]-x-{R}-x(7)-[LIVMYSTA](2)-[GSTA]-[STADEN]-N-[LIVM]-[SAN]-N-x-
[SADENFR]-[STV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 76 in 76 different sequences
Number of true positive hits 72 in 72 different sequences
Number of 'unknown' hits 0
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 12
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.74 %
Recall (true positives / (true positives + false negatives)) 85.71 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 72 sequences 

FLA1_BORBU  (P11089    ), FLGB_AERHH  (A0KM45    ), FLGB_AERHY  (Q8GLP8    ), 

FLGB_AGRFC  (Q44335    ), FLGB_BACSU  (P24500    ), FLGB_BORBU  (P52608    ), 
FLGB_BORHE  (P70910    ), FLGB_BUCAI  (P57419    ), FLGB_ECOL6  (P0ABX0    ), 
FLGB_ECOLI  (P0ABW9    ), FLGB_PROMH  (B4EYN9    ), FLGB_PROMI  (P96972    ), 
FLGB_RHOS1  (A3PKG3    ), FLGB_RHOS4  (Q3J1S6    ), FLGB_RHOSH  (Q8VLR6    ), 
FLGB_RHOSK  (B9KJG2    ), FLGB_SALTY  (P16437    ), FLGB_SHIFL  (P0ABX1    ), 
FLGB_YEREN  (Q56893    ), FLGB_YERRU  (C8BKB7    ), FLGC_AGRFC  (Q44336    ), 
FLGC_AQUAE  (O67243    ), FLGC_BACSU  (P24501    ), FLGC_BORBU  (Q57466    ), 
FLGC_BORHE  (P70911    ), FLGC_BUCAI  (P57420    ), FLGC_BUCAP  (Q8K9K8    ), 
FLGC_ECO57  (P0ABX4    ), FLGC_ECOL6  (P0ABX3    ), FLGC_ECOLI  (P0ABX2    ), 
FLGC_RHIME  (Q52944    ), FLGC_SALTI  (P0A1I8    ), FLGC_SALTY  (P0A1I7    ), 
FLGC_YEREN  (Q56894    ), FLGE_AQUAE  (O67711    ), FLGE_BORBU  (Q44767    ), 
FLGE_BRUAB  (O52070    ), FLGE_BRUME  (Q8YDL6    ), FLGE_BRUSU  (Q8FUS9    ), 
FLGE_BUCAI  (P57422    ), FLGE_BUCAP  (Q8K9K6    ), FLGE_CAUCR  (P35806    ), 
FLGE_ECOLI  (P75937    ), FLGE_RHIME  (Q9X5Y0    ), FLGE_SALTI  (P0A1J2    ), 
FLGE_SALTY  (P0A1J1    ), FLGE_TREPA  (O07884    ), FLGE_TREPH  (Q56326    ), 
FLGF_BUCAI  (P57423    ), FLGF_BUCAP  (Q8K9K5    ), FLGF_CAUCR  (Q06171    ), 
FLGF_ECOLI  (P75938    ), FLGF_RHILO  (Q98HE3    ), FLGF_SALTY  (P16323    ), 
FLGG_AGRFC  (Q44338    ), FLGG_BACSU  (P23446    ), FLGG_BORBU  (O51715    ), 
FLGG_BUCAI  (P57424    ), FLGG_BUCAP  (Q8K9K4    ), FLGG_BUCBP  (Q89AH7    ), 
FLGG_CAUCR  (Q06172    ), FLGG_ECO57  (P0ABX7    ), FLGG_ECOL6  (P0ABX6    ), 
FLGG_ECOLI  (P0ABX5    ), FLGG_RHIME  (Q52946    ), FLGG_SALTI  (P0A1J4    ), 
FLGG_SALTY  (P0A1J3    ), FLGK_BACSU  (P39810    ), FLGK_SALTI  (P0A1J6    ), 
FLGK_SALTY  (P0A1J5    ), FLHO_BACSU  (P39752    ), FLHP_BACSU  (P39753    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 12 sequences 

FLGB_AQUAE  (O67244    ), FLGB_BUCAP  (Q8K9K9    ), FLGB_BUCBP  (Q89AI0    ), 

FLGC_BUCBP  (Q89AH9    ), FLGE_HELPJ  (Q9ZKY0    ), FLGE_HELPY  (P50610    ), 
FLGF_BUCBP  (Q89AH8    ), FLGF_RHIME  (O54248    ), FLGK_BORBU  (P70859    ), 
FLGK_BUCAI  (P57428    ), FLGK_BUCAP  (Q8K9K0    ), FLGK_ECOLI  (P33235    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

FLGE_HELMU  (P50611    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			4 sequences
			


			
C3H38_ARATH (Q9LIH5    ), LOLA5_DROME (Q9V5M6    ), SCR_PEA     (Q9AVK4    ), 

			
TAF12_SCHPO (O13722    )


			
			» more
			


				
	





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