Entry: PS00598

General information about the entry

Entry name [info] CHROMO_1
Accession [info] PS00598
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00517

Name and characterization of the entry

Description [info] Chromo domain signature.
Pattern [info]
[FYL]-x-[LIVMC]-[KR]-W-x-[GDNR]-[FYWLME]-x(5,6)-[ST]-W-[ESV]-[PSTDEN]-
x(2,3)-[LIVMC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 74 in 66 different sequences
Number of true positive hits 74 in 66 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 49
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.16 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
66 sequences

CBX1_HUMAN  (P83916    ), CBX1_MOUSE  (P83917    ), CBX2_HUMAN  (Q14781    ), 
CBX2_MOUSE  (P30658    ), CBX3_HUMAN  (Q13185    ), CBX3_MOUSE  (P23198    ), 
CBX3_PONAB  (Q5R6X7    ), CBX4_HUMAN  (O00257    ), CBX4_MOUSE  (O55187    ), 
CBX5_HUMAN  (P45973    ), CBX5_MOUSE  (Q61686    ), CBX6_HUMAN  (O95503    ), 
CBX6_MOUSE  (Q9DBY5    ), CBX7_HUMAN  (O95931    ), CBX7_MOUSE  (Q8VDS3    ), 
CBX7_RAT    (P60889    ), CBX8_HUMAN  (Q9HC52    ), CBX8_MOUSE  (Q9QXV1    ), 
CDY1_HUMAN  (Q9Y6F8    ), CDY2_HUMAN  (Q9Y6F7    ), CDYL1_HUMAN (Q9Y232    ), 
CDYL2_HUMAN (Q8N8U2    ), CDYL2_MOUSE (Q9D5D8    ), CDYL_MOUSE  (Q9WTK2    ), 
CDYL_RAT    (Q6AYK9    ), CEC1_CAEEL  (P34618    ), CEC3_CAEEL  (P45968    ), 
CHD1_BOMMO  (A9X4T1    ), CHD1_CHICK  (B6ZLK2    ), CHD1_DROME  (Q7KU24    ), 
CHD1_HUMAN  (O14646    ), CHD1_MOUSE  (P40201    ), CHD1_YEAST  (P32657    ), 
CHD2_HUMAN  (O14647    ), CHD2_MOUSE  (E9PZM4    ), CHD3_HUMAN  (Q12873    ), 
CHD4_HUMAN  (Q14839    ), CHD4_MOUSE  (Q6PDQ2    ), CHP1_SCHPO  (Q10103    ), 
CLR4_SCHPO  (O60016    ), CMT1_ARATH  (O49139    ), CMT3_ARATH  (Q94F88    ), 
HP1_DROME   (P05205    ), HP1_DROVI   (P29227    ), HRP3_SCHPO  (O14139    ), 
LHP1_ARATH  (Q946J8    ), LHP1_ORYSJ  (Q339W7    ), LHP1_SOLLC  (Q944N1    ), 
MPP8_HUMAN  (Q99549    ), MPP8_MOUSE  (Q3TYA6    ), MPP8_RAT    (G3V8T1    ), 
PC_DROME    (P26017    ), SUV39_DROME (P45975    ), SUV39_DROPS (Q294B9    ), 
SUV91_BOVIN (Q2NL30    ), SUV91_HUMAN (O43463    ), SUV91_MOUSE (O54864    ), 
SUV91_PONAB (Q5RB81    ), SUV92_BOVIN (Q32PH7    ), SUV92_CHICK (Q5F3W5    ), 
SUV92_HUMAN (Q9H5I1    ), SUV92_MACFA (Q4R3E0    ), SUV92_MOUSE (Q9EQQ0    ), 
SUV92_XENTR (Q28CQ7    ), SV91A_DANRE (Q6DGD3    ), SWI6_SCHPO  (P40381    )
» more

UniProtKB/Swiss-Prot
False negative sequences
49 sequences

CEC4_CAEEL  (Q19972    ), CHD3_CAEEL  (Q22516    ), CHD3_DROME  (O16102    ), 
CHD5_HUMAN  (Q8TDI0    ), CHD6_HUMAN  (Q8TD26    ), CHD7_CHICK  (Q06A37    ), 
CHD7_HUMAN  (Q9P2D1    ), CHD7_MOUSE  (A2AJK6    ), CHD8_DANRE  (B0R0I6    ), 
CHD8_HUMAN  (Q9HCK8    ), CHD8_MOUSE  (Q09XV5    ), CHD8_RAT    (Q9JIX5    ), 
CHD8_XENTR  (B5DE69    ), CHD9_HUMAN  (Q3L8U1    ), CHD9_MOUSE  (Q8BYH8    ), 
CHDM_DROME  (O97159    ), CHP2_SCHPO  (O42934    ), CHR4_ARATH  (F4KBP5    ), 
CHR5_ARATH  (F4IV99    ), CHR7_ARATH  (F4JTF6    ), CMT1_MAIZE  (Q9AXT8    ), 
CMT2_ARATH  (Q94F87    ), CMT2_MAIZE  (Q9ARI6    ), CMT3_MAIZE  (Q8LPU5    ), 
ELF1_SCHPO  (O14134    ), ESA1_ASPOR  (Q2UMQ5    ), ESA1_SCHPO  (O94446    ), 
ESA1_YEAST  (Q08649    ), HRP1_SCHPO  (Q9US25    ), KAT8_HUMAN  (Q9H7Z6    ), 
KAT8_MOUSE  (Q9D1P2    ), KAT8_RAT    (Q5XI06    ), LE418_CAEEL (G5EBZ4    ), 
MS3L1_HUMAN (Q8N5Y2    ), MS3L1_MOUSE (Q9WVG9    ), MS3L1_PONAB (Q5R6Y9    ), 
MS3L2_HUMAN (P0C860    ), MSL3_DROME  (P50536    ), MSL3_DROVI  (Q9NBL2    ), 
MYST1_ARATH (Q9FLF7    ), MYST1_ORYSJ (Q8LI34    ), MYST2_ARATH (Q9LXD7    ), 
NEW1_YEAST  (Q08972    ), PKL_ARATH   (Q9S775    ), SR43C_ARATH (O22265    ), 
SR43C_ORYSJ (Q8LSQ2    ), SUV91_XENLA (Q6NRE8    ), VPRBP_HUMAN (Q9Y4B6    ), 
VPRBP_MOUSE (Q80TR8    )
» more

PDB
[Detailed view]
64 PDB

1AP0; 1G6Z; 1GUW; 1KNA; 1KNE; 1PDQ; 1PFB; 1Q3L; 2B2T; 2B2U; 2B2V; 2B2W; 2B2Y; 2D9U; 2DNT; 2DNV; 2DY7; 2DY8; 2EE1; 2H1E; 2K1B; 2K28; 2KVM; 2L11; 2L12; 2L1B; 2MJ8; 2RSN; 2RSO; 2RVL; 2RVM; 2RVN; 3DM1; 3F2U; 3FDT; 3G7L; 3GV6; 3H91; 3I8Z; 3I90; 3I91; 3LWE; 3MTS; 3MWY; 3QO2; 3R93; 3SVM; 3TZD; 4HAE; 4MN3; 4NW2; 4O42; 4O9I; 4X3K; 4X3S; 4X3T; 4X3U; 5AFW; 5EJW; 5EPJ; 5EPK; 5EPL; 5EQ0; 5JJZ
» more

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