Entry: PS00598

General information about the entry

Entry name [info] CHROMO_1
Accession [info] PS00598
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00517

Name and characterization of the entry

Description [info] Chromo domain signature.
Pattern [info]
[FYL]-x-[LIVMC]-[KR]-W-x-[GDNR]-[FYWLME]-x(5,6)-[ST]-W-[ESV]-[PSTDEN]-
x(2,3)-[LIVMC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 74 in 66 different sequences
Number of true positive hits 74 in 66 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 47
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 61.16 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
66 sequences

CBX1_HUMAN  (P83916), CBX1_MOUSE  (P83917), CBX2_HUMAN  (Q14781), 
CBX2_MOUSE  (P30658), CBX3_HUMAN  (Q13185), CBX3_MOUSE  (P23198), 
CBX3_PONAB  (Q5R6X7), CBX4_HUMAN  (O00257), CBX4_MOUSE  (O55187), 
CBX5_HUMAN  (P45973), CBX5_MOUSE  (Q61686), CBX6_HUMAN  (O95503), 
CBX6_MOUSE  (Q9DBY5), CBX7_HUMAN  (O95931), CBX7_MOUSE  (Q8VDS3), 
CBX7_RAT    (P60889), CBX8_HUMAN  (Q9HC52), CBX8_MOUSE  (Q9QXV1), 
CDY1_HUMAN  (Q9Y6F8), CDY2_HUMAN  (Q9Y6F7), CDYL1_HUMAN (Q9Y232), 
CDYL2_HUMAN (Q8N8U2), CDYL2_MOUSE (Q9D5D8), CDYL_MOUSE  (Q9WTK2), 
CDYL_RAT    (Q6AYK9), CEC1_CAEEL  (P34618), CEC3_CAEEL  (P45968), 
CHD1_BOMMO  (A9X4T1), CHD1_CHICK  (B6ZLK2), CHD1_DROME  (Q7KU24), 
CHD1_HUMAN  (O14646), CHD1_MOUSE  (P40201), CHD1_YEAST  (P32657), 
CHD2_HUMAN  (O14647), CHD2_MOUSE  (E9PZM4), CHD3_HUMAN  (Q12873), 
CHD4_HUMAN  (Q14839), CHD4_MOUSE  (Q6PDQ2), CHP1_SCHPO  (Q10103), 
CLR4_SCHPO  (O60016), CMT1_ARATH  (O49139), CMT3_ARATH  (Q94F88), 
HP1_DROME   (P05205), HP1_DROVI   (P29227), HRP3_SCHPO  (O14139), 
LHP1_ARATH  (Q946J8), LHP1_ORYSJ  (Q339W7), LHP1_SOLLC  (Q944N1), 
MPP8_HUMAN  (Q99549), MPP8_MOUSE  (Q3TYA6), MPP8_RAT    (G3V8T1), 
PC_DROME    (P26017), SUV39_DROME (P45975), SUV39_DROPS (Q294B9), 
SUV91_BOVIN (Q2NL30), SUV91_HUMAN (O43463), SUV91_MOUSE (O54864), 
SUV91_PONAB (Q5RB81), SUV92_BOVIN (Q32PH7), SUV92_CHICK (Q5F3W5), 
SUV92_HUMAN (Q9H5I1), SUV92_MACFA (Q4R3E0), SUV92_MOUSE (Q9EQQ0), 
SUV92_XENTR (Q28CQ7), SV91A_DANRE (Q6DGD3), SWI6_SCHPO  (P40381)
» More

UniProtKB/Swiss-Prot
False negative sequences
47 sequences

CHD3_CAEEL  (Q22516), CHD3_DROME  (O16102), CHD5_HUMAN  (Q8TDI0), 
CHD6_HUMAN  (Q8TD26), CHD7_CHICK  (Q06A37), CHD7_HUMAN  (Q9P2D1), 
CHD7_MOUSE  (A2AJK6), CHD8_DANRE  (B0R0I6), CHD8_HUMAN  (Q9HCK8), 
CHD8_MOUSE  (Q09XV5), CHD8_RAT    (Q9JIX5), CHD8_XENTR  (B5DE69), 
CHD9_HUMAN  (Q3L8U1), CHD9_MOUSE  (Q8BYH8), CHDM_DROME  (O97159), 
CHP2_SCHPO  (O42934), CHR4_ARATH  (F4KBP5), CHR5_ARATH  (F4IV99), 
CMT1_MAIZE  (Q9AXT8), CMT2_ARATH  (Q94F87), CMT2_MAIZE  (Q9ARI6), 
CMT3_MAIZE  (Q8LPU5), ELF1_SCHPO  (O14134), ESA1_ASPOR  (Q2UMQ5), 
ESA1_SCHPO  (O94446), ESA1_YEAST  (Q08649), HRP1_SCHPO  (Q9US25), 
KAT8_HUMAN  (Q9H7Z6), KAT8_MOUSE  (Q9D1P2), KAT8_RAT    (Q5XI06), 
LE418_CAEEL (G5EBZ4), MS3L1_HUMAN (Q8N5Y2), MS3L1_MOUSE (Q9WVG9), 
MS3L1_PONAB (Q5R6Y9), MS3L2_HUMAN (P0C860), MSL3_DROME  (P50536), 
MSL3_DROVI  (Q9NBL2), MYST1_ARATH (Q9FLF7), MYST1_ORYSJ (Q8LI34), 
MYST2_ARATH (Q9LXD7), NEW1_YEAST  (Q08972), PKL_ARATH   (Q9S775), 
SR43C_ARATH (O22265), SR43C_ORYSJ (Q8LSQ2), SUV91_XENLA (Q6NRE8), 
VPRBP_HUMAN (Q9Y4B6), VPRBP_MOUSE (Q80TR8)
» More

PDB
[Detailed view]
53 PDB

1AP0; 1G6Z; 1GUW; 1KNA; 1KNE; 1PDQ; 1PFB; 1Q3L; 2B2T; 2B2U; 2B2V; 2B2W; 2B2Y; 2D9U; 2DNT; 2DNV; 2DY7; 2DY8; 2EE1; 2H1E; 2K1B; 2K28; 2KVM; 2L11; 2L12; 2L1B; 2MJ8; 2RSN; 2RSO; 3DM1; 3F2U; 3FDT; 3G7L; 3GV6; 3H91; 3I8Z; 3I90; 3I91; 3LWE; 3MTS; 3MWY; 3QO2; 3R93; 3SVM; 3TZD; 4HAE; 4MN3; 4NW2; 4O42; 4X3K; 4X3S; 4X3T; 4X3U
» More

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