Entry: PS00598

General information about the entry
Entry name CHROMO_1
Accession number PS00598
Entry type PATTERN
Date DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00517
Name and characterization of the entry
DescriptionChromo domain signature.
Pattern [FYL]-x-[LIVMC]-[KR]-W-x-[GDNR]-[FYWLME]-x(5,6)-[ST]-W-[ESV]-[PSTDEN]- x(2,3)-[LIVMC].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 71 hits in 64 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 71 hits in 64 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 43
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 62.28 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CBX1_HUMAN  (P83916), CBX1_MOUSE  (P83917), CBX2_HUMAN  (Q14781), 
CBX2_MOUSE  (P30658), CBX3_HUMAN  (Q13185), CBX3_MOUSE  (P23198), 
CBX3_PONAB  (Q5R6X7), CBX4_HUMAN  (O00257), CBX4_MOUSE  (O55187), 
CBX5_HUMAN  (P45973), CBX5_MOUSE  (Q61686), CBX6_HUMAN  (O95503), 
CBX6_MOUSE  (Q9DBY5), CBX7_HUMAN  (O95931), CBX7_MOUSE  (Q8VDS3), 
CBX7_RAT    (P60889), CBX8_HUMAN  (Q9HC52), CBX8_MOUSE  (Q9QXV1), 
CDY1_HUMAN  (Q9Y6F8), CDY2_HUMAN  (Q9Y6F7), CDYL1_HUMAN (Q9Y232), 
CDYL2_HUMAN (Q8N8U2), CDYL_MOUSE  (Q9WTK2), CDYL_RAT    (Q6AYK9), 
CEC1_CAEEL  (P34618), CHD1_BOMMO  (A9X4T1), CHD1_CHICK  (B6ZLK2), 
CHD1_DROME  (Q7KU24), CHD1_HUMAN  (O14646), CHD1_MOUSE  (P40201), 
CHD1_YEAST  (P32657), CHD2_HUMAN  (O14647), CHD3_HUMAN  (Q12873), 
CHD4_HUMAN  (Q14839), CHD4_MOUSE  (Q6PDQ2), CHP1_SCHPO  (Q10103), 
CLR4_SCHPO  (O60016), CMT1_ARATH  (O49139), CMT3_ARATH  (Q94F88), 
HP1_DROME   (P05205), HP1_DROVI   (P29227), HRP3_SCHPO  (O14139), 
LHP1_ARATH  (Q946J8), LHP1_ORYSJ  (Q339W7), LHP1_SOLLC  (Q944N1), 
MPP8_HUMAN  (Q99549), MPP8_MOUSE  (Q3TYA6), MPP8_RAT    (G3V8T1), 
PC_DROME    (P26017), SUV39_DROME (P45975), SUV39_DROPS (Q294B9), 
SUV91_BOVIN (Q2NL30), SUV91_HUMAN (O43463), SUV91_MOUSE (O54864), 
SUV91_PONAB (Q5RB81), SUV92_BOVIN (Q32PH7), SUV92_CHICK (Q5F3W5), 
SUV92_HUMAN (Q9H5I1), SUV92_MACFA (Q4R3E0), SUV92_MOUSE (Q9EQQ0), 
SUV92_XENTR (Q28CQ7), SV91A_DANRE (Q6DGD3), SWI6_SCHPO  (P40381), 
YNZ8_CAEEL  (P45968)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CHD3_CAEEL  (Q22516), CHD3_DROME  (O16102), CHD5_HUMAN  (Q8TDI0), 
CHD6_HUMAN  (Q8TD26), CHD7_CHICK  (Q06A37), CHD7_HUMAN  (Q9P2D1), 
CHD7_MOUSE  (A2AJK6), CHD8_DANRE  (B0R0I6), CHD8_HUMAN  (Q9HCK8), 
CHD8_MOUSE  (Q09XV5), CHD8_RAT    (Q9JIX5), CHD8_XENTR  (B5DE69), 
CHD9_HUMAN  (Q3L8U1), CHD9_MOUSE  (Q8BYH8), CHDM_DROME  (O97159), 
CHP2_SCHPO  (O42934), CMT1_MAIZE  (Q9AXT8), CMT2_ARATH  (Q94F87), 
CMT2_MAIZE  (Q9ARI6), CMT3_MAIZE  (Q8LPU5), ELF1_SCHPO  (O14134), 
ESA1_ASPOR  (Q2UMQ5), ESA1_SCHPO  (O94446), ESA1_YEAST  (Q08649), 
HRP1_SCHPO  (Q9US25), KAT8_HUMAN  (Q9H7Z6), KAT8_MOUSE  (Q9D1P2), 
KAT8_RAT    (Q5XI06), LE418_CAEEL (G5EBZ4), MS3L1_HUMAN (Q8N5Y2), 
MS3L1_MOUSE (Q9WVG9), MS3L1_PONAB (Q5R6Y9), MS3L2_HUMAN (P0C860), 
MSL3_DROME  (P50536), MSL3_DROVI  (Q9NBL2), MYST1_ARATH (Q9FLF7), 
MYST1_ORYSJ (Q8LI34), MYST2_ARATH (Q9LXD7), NEW1_YEAST  (Q08972), 
PKL_ARATH   (Q9S775), SR43C_ARATH (O22265), SR43C_ORYSJ (Q8LSQ2), 
SUV91_XENLA (Q6NRE8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AP0; 1G6Z; 1GUW; 1KNA; 1KNE; 1PDQ; 1PFB; 1Q3L; 2B2T; 2B2U; 2B2V; 2B2W; 2B2Y; 2D9U; 2DNT; 2DNV; 2DY7; 2DY8; 2EE1; 2H1E; 2K1B; 2K28; 2KVM; 2L11; 2L12; 2L1B; 2RSN; 2RSO; 3DM1; 3F2U; 3FDT; 3G7L; 3GV6; 3H91; 3I8Z; 3I90; 3I91; 3LWE; 3MTS; 3MWY; 3QO2; 3R93; 3SVM; 3TZD; 4HAE;

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