Entry: PS00598

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General information about the entry

Entry name [info] CHROMO_1
Accession [info] PS00598
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); JUL-1999 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00517

Name and characterization of the entry

Description [info] Chromo domain signature.
Pattern [info]
[FYL]-x-[LIVMC]-[KR]-W-x-[GDNR]-[FYWLME]-x(5,6)-[ST]-W-[ESV]-[PSTDEN]-
x(2,3)-[LIVMC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 74 in 66 different sequences
Number of true positive hits 74 in 66 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 45
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 62.18 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
66 sequences

CBX1_HUMAN  (P83916), CBX1_MOUSE  (P83917), CBX2_HUMAN  (Q14781), 
CBX2_MOUSE  (P30658), CBX3_HUMAN  (Q13185), CBX3_MOUSE  (P23198), 
CBX3_PONAB  (Q5R6X7), CBX4_HUMAN  (O00257), CBX4_MOUSE  (O55187), 
CBX5_HUMAN  (P45973), CBX5_MOUSE  (Q61686), CBX6_HUMAN  (O95503), 
CBX6_MOUSE  (Q9DBY5), CBX7_HUMAN  (O95931), CBX7_MOUSE  (Q8VDS3), 
CBX7_RAT    (P60889), CBX8_HUMAN  (Q9HC52), CBX8_MOUSE  (Q9QXV1), 
CDY1_HUMAN  (Q9Y6F8), CDY2_HUMAN  (Q9Y6F7), CDYL1_HUMAN (Q9Y232), 
CDYL2_HUMAN (Q8N8U2), CDYL2_MOUSE (Q9D5D8), CDYL_MOUSE  (Q9WTK2), 
CDYL_RAT    (Q6AYK9), CEC1_CAEEL  (P34618), CEC3_CAEEL  (P45968), 
CHD1_BOMMO  (A9X4T1), CHD1_CHICK  (B6ZLK2), CHD1_DROME  (Q7KU24), 
CHD1_HUMAN  (O14646), CHD1_MOUSE  (P40201), CHD1_YEAST  (P32657), 
CHD2_HUMAN  (O14647), CHD2_MOUSE  (E9PZM4), CHD3_HUMAN  (Q12873), 
CHD4_HUMAN  (Q14839), CHD4_MOUSE  (Q6PDQ2), CHP1_SCHPO  (Q10103), 
CLR4_SCHPO  (O60016), CMT1_ARATH  (O49139), CMT3_ARATH  (Q94F88), 
HP1_DROME   (P05205), HP1_DROVI   (P29227), HRP3_SCHPO  (O14139), 
LHP1_ARATH  (Q946J8), LHP1_ORYSJ  (Q339W7), LHP1_SOLLC  (Q944N1), 
MPP8_HUMAN  (Q99549), MPP8_MOUSE  (Q3TYA6), MPP8_RAT    (G3V8T1), 
PC_DROME    (P26017), SUV39_DROME (P45975), SUV39_DROPS (Q294B9), 
SUV91_BOVIN (Q2NL30), SUV91_HUMAN (O43463), SUV91_MOUSE (O54864), 
SUV91_PONAB (Q5RB81), SUV92_BOVIN (Q32PH7), SUV92_CHICK (Q5F3W5), 
SUV92_HUMAN (Q9H5I1), SUV92_MACFA (Q4R3E0), SUV92_MOUSE (Q9EQQ0), 
SUV92_XENTR (Q28CQ7), SV91A_DANRE (Q6DGD3), SWI6_SCHPO  (P40381)
» More

UniProtKB/Swiss-Prot
False negative sequences
45 sequences

CHD3_CAEEL  (Q22516), CHD3_DROME  (O16102), CHD5_HUMAN  (Q8TDI0), 
CHD6_HUMAN  (Q8TD26), CHD7_CHICK  (Q06A37), CHD7_HUMAN  (Q9P2D1), 
CHD7_MOUSE  (A2AJK6), CHD8_DANRE  (B0R0I6), CHD8_HUMAN  (Q9HCK8), 
CHD8_MOUSE  (Q09XV5), CHD8_RAT    (Q9JIX5), CHD8_XENTR  (B5DE69), 
CHD9_HUMAN  (Q3L8U1), CHD9_MOUSE  (Q8BYH8), CHDM_DROME  (O97159), 
CHP2_SCHPO  (O42934), CMT1_MAIZE  (Q9AXT8), CMT2_ARATH  (Q94F87), 
CMT2_MAIZE  (Q9ARI6), CMT3_MAIZE  (Q8LPU5), ELF1_SCHPO  (O14134), 
ESA1_ASPOR  (Q2UMQ5), ESA1_SCHPO  (O94446), ESA1_YEAST  (Q08649), 
HRP1_SCHPO  (Q9US25), KAT8_HUMAN  (Q9H7Z6), KAT8_MOUSE  (Q9D1P2), 
KAT8_RAT    (Q5XI06), LE418_CAEEL (G5EBZ4), MS3L1_HUMAN (Q8N5Y2), 
MS3L1_MOUSE (Q9WVG9), MS3L1_PONAB (Q5R6Y9), MS3L2_HUMAN (P0C860), 
MSL3_DROME  (P50536), MSL3_DROVI  (Q9NBL2), MYST1_ARATH (Q9FLF7), 
MYST1_ORYSJ (Q8LI34), MYST2_ARATH (Q9LXD7), NEW1_YEAST  (Q08972), 
PKL_ARATH   (Q9S775), SR43C_ARATH (O22265), SR43C_ORYSJ (Q8LSQ2), 
SUV91_XENLA (Q6NRE8), VPRBP_HUMAN (Q9Y4B6), VPRBP_MOUSE (Q80TR8)
» More

PDB
[Detailed view]
49 PDB

1AP0; 1G6Z; 1GUW; 1KNA; 1KNE; 1PDQ; 1PFB; 1Q3L; 2B2T; 2B2U; 2B2V; 2B2W; 2B2Y; 2D9U; 2DNT; 2DNV; 2DY7; 2DY8; 2EE1; 2H1E; 2K1B; 2K28; 2KVM; 2L11; 2L12; 2L1B; 2MJ8; 2RSN; 2RSO; 3DM1; 3F2U; 3FDT; 3G7L; 3GV6; 3H91; 3I8Z; 3I90; 3I91; 3LWE; 3MTS; 3MWY; 3QO2; 3R93; 3SVM; 3TZD; 4HAE; 4MN3; 4NW2; 4O42
» More

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