Entry: PS00603

General information about the entry

Entry name [info] TK_CELLULAR_TYPE
Accession [info] PS00603
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00524

Name and characterization of the entry

Description [info] Thymidine kinase cellular-type signature.
Pattern [info]
[GA]-x(1,2)-[DE]-x-Y-x-[STAPV]-x-C-[NKR]-x-[CH]-[LIVMFYWH].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 185 in 185 different sequences
Number of true positive hits 184 in 184 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 30
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 99.46 %
Recall (true positives / (true positives + false negatives)) 85.98 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
184 sequences

KITHA_ARATH (Q9S750    ), KITHB_ARATH (F4KBF5    ), KITH_AMEPV  (P28852    ), 
KITH_ANOFW  (B7GMH4    ), KITH_ASFB7  (P18555    ), KITH_ASFK5  (P0C8I3    ), 
KITH_ASFM2  (P0C8I4    ), KITH_ASFP4  (P0C8I5    ), KITH_ASFWA  (P0C8I6    ), 
KITH_BACAA  (C3P292    ), KITH_BACAC  (C3LFK4    ), KITH_BACAH  (A0RLB6    ), 
KITH_BACAN  (Q81JX0    ), KITH_BACC0  (B7JHF2    ), KITH_BACC1  (Q72XC1    ), 
KITH_BACC2  (B7IQY3    ), KITH_BACC3  (C1F0Q7    ), KITH_BACC4  (B7HFM8    ), 
KITH_BACC7  (B7HY90    ), KITH_BACCN  (A7GV80    ), KITH_BACCQ  (B9IRW3    ), 
KITH_BACCR  (Q814U0    ), KITH_BACCZ  (Q630R8    ), KITH_BACHD  (Q9K6F0    ), 
KITH_BACHK  (Q6HAV3    ), KITH_BACLD  (Q65DU6    ), KITH_BACMF  (A7Z9S5    ), 
KITH_BACP2  (A8FID5    ), KITH_BACSK  (Q5WB52    ), KITH_BACSU  (Q03221    ), 
KITH_BACWK  (A9VSC8    ), KITH_BDEBA  (Q6MHW4    ), KITH_BOVIN  (A5D7R8    ), 
KITH_BPT4   (P13300    ), KITH_CALS4  (Q8RDA1    ), KITH_CBEPV  (Q05879    ), 
KITH_CFEPV  (Q05880    ), KITH_CHICK  (P04047    ), KITH_CHLAA  (A9WGI6    ), 
KITH_CHLAD  (B8G6Y1    ), KITH_CHLSY  (B9LJ65    ), KITH_CLOAB  (Q97F65    ), 
KITH_CLOB1  (A7FQF9    ), KITH_CLOB6  (C3KYH2    ), KITH_CLOBH  (A5HY32    ), 
KITH_CLOBJ  (C1FQ94    ), KITH_CLOBK  (B1IE18    ), KITH_CLOBL  (A7G9N9    ), 
KITH_CLOBM  (B1KSQ8    ), KITH_CLOTE  (Q898Y8    ), KITH_COLP3  (Q483R5    ), 
KITH_COPPD  (B5Y8S5    ), KITH_COXBU  (Q83A42    ), KITH_CRIGR  (P09768    ), 
KITH_DEIDV  (C1D0Z6    ), KITH_DICDI  (Q27564    ), KITH_DICT6  (B5YDB0    ), 
KITH_DICTD  (B8E001    ), KITH_ECO57  (P0A3L9    ), KITH_ECOL6  (Q8FHX4    ), 
KITH_ECOLI  (P23331    ), KITH_ENTFA  (Q831F5    ), KITH_FOWPN  (P10052    ), 
KITH_GEOKA  (Q5KUH1    ), KITH_GEOSW  (C5D9N8    ), KITH_GEOTN  (A4ITL0    ), 
KITH_HAEDU  (Q7VLH2    ), KITH_HAEI8  (Q4QN19    ), KITH_HAEIN  (P44309    ), 
KITH_HALS3  (B0R5S5    ), KITH_HALSA  (Q9HPQ9    ), KITH_HALWD  (Q18J88    ), 
KITH_HUMAN  (P04183    ), KITH_IDILO  (Q5QWC7    ), KITH_JANSC  (Q28M21    ), 
KITH_LACAC  (Q5FKZ1    ), KITH_LACJO  (Q74K26    ), KITH_LACLA  (Q9CHX5    ), 
KITH_LACPL  (Q88UT1    ), KITH_LACSS  (Q38WJ3    ), KITH_LEGPA  (Q5X7B5    ), 
KITH_LEGPH  (Q5ZXU5    ), KITH_LEGPL  (Q5WYR3    ), KITH_LISIN  (Q927U9    ), 
KITH_LISMF  (Q71WN4    ), KITH_LISMO  (Q8Y4A7    ), KITH_MACCJ  (B9E8G2    ), 
KITH_MANSM  (Q65RN9    ), KITH_MESFL  (Q6F0I2    ), KITH_MIMIV  (Q5UP25    ), 
KITH_MONPV  (P04363    ), KITH_MOUSE  (P04184    ), KITH_MYCCT  (Q2SSX9    ), 
KITH_MYCGA  (Q8RLE0    ), KITH_MYCGE  (P47280    ), KITH_MYCH2  (Q5ZZT0    ), 
KITH_MYCH7  (Q4A7B8    ), KITH_MYCHJ  (Q4A977    ), KITH_MYCMO  (Q6KH30    ), 
KITH_MYCMS  (Q8VVL0    ), KITH_MYCPE  (Q8EU99    ), KITH_MYXVL  (Q9Q8N6    ), 
KITH_MYXVU  (P28851    ), KITH_NOVAD  (Q2G5F0    ), KITH_OCEIH  (Q8EM59    ), 
KITH_ORYSJ  (O81263    ), KITH_PASMU  (P57926    ), KITH_PECAS  (Q6D4R3    ), 
KITH_PHOLL  (Q7N457    ), KITH_PHOPR  (Q6LT81    ), KITH_PSELT  (A8F7B3    ), 
KITH_PYRAE  (Q8ZV53    ), KITH_RACVI  (Q90029    ), KITH_RFVKA  (P07605    ), 
KITH_RHIEC  (Q2K5N6    ), KITH_RHILO  (Q98HR4    ), KITH_RHIME  (Q92N38    ), 
KITH_RHOBA  (Q7UFR1    ), KITH_RHOSI  (Q9ZIG2    ), KITH_ROSCS  (A7NI79    ), 
KITH_ROSS1  (A5UZV5    ), KITH_RUEPO  (Q5LUY8    ), KITH_SALCH  (Q57NR0    ), 
KITH_SALPA  (Q5PCT4    ), KITH_SALRD  (Q2RZH4    ), KITH_SALTI  (Q8XFQ8    ), 
KITH_SALTY  (Q7CQF3    ), KITH_SHEON  (Q8ECK0    ), KITH_SHEVK  (P16600    ), 
KITH_SHIBS  (Q31ZS8    ), KITH_SHIDS  (Q32GW8    ), KITH_SHIFL  (P0A3M0    ), 
KITH_SHISS  (Q3Z0V3    ), KITH_STAA3  (Q2FF09    ), KITH_STAAB  (Q2YUN4    ), 
KITH_STAAC  (Q5HE81    ), KITH_STAAM  (P65230    ), KITH_STAAN  (P65231    ), 
KITH_STAAR  (Q6GEV6    ), KITH_STAAS  (Q6G7J1    ), KITH_STAAW  (Q8NVG5    ), 
KITH_STAEQ  (Q5HMA3    ), KITH_STAES  (Q8CRM9    ), KITH_STAHJ  (Q4L800    ), 
KITH_STAS1  (Q49Z66    ), KITH_STRA1  (Q3K118    ), KITH_STRA3  (Q8E5C2    ), 
KITH_STRA5  (Q8DZM3    ), KITH_STRGC  (P47848    ), KITH_STRMU  (Q8DU63    ), 
KITH_STRP1  (Q99ZP6    ), KITH_STRP3  (P0DB96    ), KITH_STRP6  (Q5XC70    ), 
KITH_STRP8  (Q8P126    ), KITH_STRPM  (Q48TL1    ), KITH_STRPN  (Q97R22    ), 
KITH_STRPQ  (P0DB97    ), KITH_STRR6  (Q8DPZ6    ), KITH_STRT1  (Q5M0B8    ), 
KITH_STRT2  (Q5M4W5    ), KITH_SWPVK  (P23335    ), KITH_THEKO  (Q5JGT7    ), 
KITH_THEMA  (Q9WYN2    ), KITH_THEP1  (A5IK18    ), KITH_THEP3  (B0K7G9    ), 
KITH_THEPX  (B0K1F4    ), KITH_THESQ  (B1L989    ), KITH_UREP2  (B1AJN5    ), 
KITH_UREPA  (Q9PPP5    ), KITH_UREU1  (B5ZCA9    ), KITH_VACCA  (O57203    ), 
KITH_VACCC  (P68564    ), KITH_VACCT  (Q9JFB7    ), KITH_VACCW  (P68563    ), 
KITH_VAR67  (P04364    ), KITH_VIBCH  (Q9KST9    ), KITH_VIBF1  (Q5E4F2    ), 
KITH_VIBPA  (Q87QJ8    ), KITH_VIBVU  (Q8D8R2    ), KITH_VIBVY  (Q7MLR4    ), 
KITH_YERPE  (Q8ZEJ1    ), KITH_YERPS  (Q66AM8    ), KITH_YMTV5  (Q90033    ), 
KITH_ZYMMO  (Q5NQ29    )
» more

UniProtKB/Swiss-Prot
False negative sequences
30 sequences

KITH_AGRFC  (Q7CXF9    ), KITH_AYWBP  (Q2NIM1    ), KITH_BACFN  (Q5LHP5    ), 
KITH_BACFR  (Q64YL9    ), KITH_BACNA  (O52951    ), KITH_BACTN  (Q8A5G4    ), 
KITH_BACV8  (A6L1E7    ), KITH_BLOFL  (Q7VQZ6    ), KITH_BLOPB  (Q492N1    ), 
KITH_CHRVO  (Q7NVK0    ), KITH_DEIRA  (Q9RSY5    ), KITH_ENCCU  (O96720    ), 
KITH_FRATH  (Q2A3U3    ), KITH_FRATT  (Q5NH50    ), KITH_MYCA5  (B3PM40    ), 
KITH_MYCPN  (P75070    ), KITH_ONYPE  (Q6YRB1    ), KITH_PORG3  (B2RJJ6    ), 
KITH_PORGI  (Q7MVV7    ), KITH_PROAC  (Q6A8W6    ), KITH_PSEHT  (Q3IBU5    ), 
KITH_RHOFT  (Q21Q74    ), KITH_STRAW  (Q82KI9    ), KITH_STRCO  (O50519    ), 
KITH_XANAC  (Q8PEQ8    ), KITH_XANC5  (Q3BM98    ), KITH_XANC8  (Q4UNV0    ), 
KITH_XANCP  (Q8P3C8    ), KITH_XANOM  (Q2P902    ), KITH_XANOR  (Q5H6C5    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

KITH_RAT    (P27158    )

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

PURP_METS3  (A5UKI3    )

		
PDB
[Detailed view]
12 PDB

1W4R; 1XBT; 2B8T; 2J87; 2J9R; 2JA1; 2ORV; 2ORW; 2QQ0; 2QQE; 2UZ3; 2WVJ

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