Entry: PS00626

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General information about the entry

Entry name [info] RCC1_2
Accession [info] PS00626
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00544

Name and characterization of the entry

Description [info] Regulator of chromosome condensation (RCC1) signature 2.
Pattern [info]
[LIVMFA]-[STAGC](2)-G-x-{TAV}-H-[STAGLI]-[LIVMFA]-{KI}-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 344 in 279 different sequences
Number of true positive hits 125 in 60 different sequences
Number of 'unknown' hits
Number of false positive hits 219 in 219 different sequences
Number of false negative sequences 19
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 36.34 %
Recall (true positives / (true positives + false negatives)) 86.81 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
60 sequences

ALS2_HUMAN  (Q96Q42), ALS2_MOUSE  (Q920R0), ALS2_PANTR  (Q5BIW4), 
ALS2_RAT    (P0C5Y8), ATS1_YEAST  (P31386), FMP25_YEAST (Q08023), 
GEFC_DICDI  (Q8IS20), HERC1_HUMAN (Q15751), HERC2_DROME (Q9VR91), 
HERC2_HUMAN (O95714), HERC2_MOUSE (Q4U2R1), HERC3_HUMAN (Q15034), 
HERC4_HUMAN (Q5GLZ8), HERC4_MOUSE (Q6PAV2), HERC4_RAT   (Q5PQN1), 
HERC5_HUMAN (Q9UII4), HERC6_HUMAN (Q8IVU3), HERC6_MOUSE (F2Z461), 
HIW_DROME   (Q9NB71), MYCB2_HUMAN (O75592), MYCB2_MOUSE (Q7TPH6), 
NEK9_XENLA  (Q7ZZC8), RCBT1_HUMAN (Q8NDN9), RCBT1_MOUSE (Q6NXM2), 
RCBT2_HUMAN (O95199), RCBT2_MOUSE (Q99LJ7), RCBT2_PONAB (Q5RCZ7), 
RCBT2_RAT   (Q6P798), RCC1_CAEEL  (Q18211), RCC1_CANAX  (P52499), 
RCC1_DROME  (P25171), RCC1_HUMAN  (P18754), RCC1_MESAU  (P23800), 
RCC1_MOUSE  (Q8VE37), RCC1_SCHPO  (P28745), RCC1_XENLA  (P25183), 
RCC1_YEAST  (P21827), RCC2_DANRE  (Q6NYE2), RCC2_HUMAN  (Q9P258), 
RCC2_MOUSE  (Q8BK67), RCC2_XENLA  (Q52KW8), RCCD1_HUMAN (A6NED2), 
RCCD1_MACFA (Q4R828), RCCD1_MOUSE (Q8BTU7), RCCDA_DICDI (Q54X24), 
RCCDB_DICDI (P0C7G9), RPGRH_CAEEL (Q5DX34), RPGR_CANFA  (Q9N1T2), 
RPGR_HUMAN  (Q92834), RPGR_MOUSE  (Q9R0X5), RPM1_CAEEL  (Q17551), 
SAF1_YEAST  (P38352), SPKUL_DICDI (Q8SSY6), SRGEF_BOVIN (Q3MHW0), 
SRGEF_HUMAN (Q9UGK8), SRGEF_MOUSE (Q80YD6), TIRA_DICDI  (Q54HT1), 
UVR8_ARATH  (Q9FN03), WBS16_HUMAN (Q96I51), YF94_SCHPO  (O42645)
» More

UniProtKB/Swiss-Prot
False negative sequences
19 sequences

BTB1_SCHPO  (O74881), FBX24_HUMAN (O75426), FBX24_MACFA (Q4R327), 
FBX24_MOUSE (Q9D417), GACGG_DICDI (Q54VW7), IBTK_HUMAN  (Q9P2D0), 
IBTK_MOUSE  (Q6ZPR6), IBTK_XENLA  (Q6NRS1), NEK8_DANRE  (Q90XC2), 
NEK8_HUMAN  (Q86SG6), NEK8_MOUSE  (Q91ZR4), NEK8_RAT    (D3ZGQ5), 
NEK9_HUMAN  (Q8TD19), NEK9_MOUSE  (Q8K1R7), POF9_SCHPO  (O74381), 
RCCDC_DICDI (Q54Q89), TITIN_HUMAN (Q8WZ42), TITIN_MOUSE (A2ASS6), 
WBS16_MOUSE (Q9CYF5)
» More

UniProtKB/Swiss-Prot
False positive sequences
219 sequences

095R_FRG3G  (Q6GZN0), ABRB_ABRPR  (Q06077), ACCD1_ROSS1 (A5UQC0), 
ACUK_AJECG  (C0NCM1), ACUK_AJECN  (A6R213), ACYP_PECAS  (Q6D6C4), 
ADPG1_ARATH (O23147), ADPG2_ARATH (Q8RY29), AGS_AGRRH   (P27875), 
AHPF_STAAM  (P66012), AHPF_STAAN  (P99118), AHPF_STAAR  (Q6GJR8), 
AHPF_STAAS  (Q6GC92), AHPF_STAAW  (P66013), ALAT_SCHPO  (Q10334), 
AREL1_HUMAN (O15033), AREL1_MOUSE (Q8CHG5), AROA1_STRCO (Q9L213), 
AROC_LEIXX  (Q6AF97), AROC_STRMU  (Q8DUW1), AROC_STRP6  (Q5XCT6), 
AROC_STRP8  (Q8P1H5), AROC_STRPG  (A2RF78), AROC_STRSV  (A3CNV6), 
AROC_TROW8  (Q83HU6), AROC_TROWT  (Q83GD5), ARSB1_ECOLX (P08691), 
ASUN_XENLA  (Q6GLY5), ASUN_XENTR  (Q6DIK0), AT18C_ARATH (Q8GYD7), 
AT18D_ARATH (Q0WPK3), ATGT_SULTO  (Q975U5), ATTY_TRYCR  (P33447), 
AXE1_ASPAW  (Q92194), AXE1_ASPFI  (Q96W96), AXE1_ASPFU  (Q4WBW4), 
AXE1_ASPNC  (A2QZI3), AXE1_ASPTN  (Q0C8Z1), AXE1_NEOFI  (A1DBP9), 
BASB_HALS3  (B0R6I5), BCH_HAEPL   (Q9SPK6), C508B_DICDI (Q54SK0), 
CLH_DROME   (P29742), COBN_PSEAE  (Q9HZQ3), COPE2_ARATH (O64748), 
CSGE_ECO57  (P0AE97), CSGE_ECOL6  (P0AE96), CSGE_ECOLI  (P0AE95), 
CTAA_PARDP  (A1B8C2), CTAA_RUEPO  (Q5LRS1), CYLD_BOVIN  (Q1RMU2), 
DAPAT_NATTJ (B2A250), DDB1A_ARATH (Q9M0V3), DDB1B_ARATH (O49552), 
DDB1_SOLCE  (Q6E7D1), DDB1_SOLLC  (Q6QNU4), DLG5_HUMAN  (Q8TDM6), 
DNAJ_STRPN  (P95830), DNAJ_STRR6  (Q8CWT2), DTDA_HALS3  (B0R384), 
DTDA_HALSA  (Q9HS70), EGFL8_PIG   (A5A8Y8), EGTE_MYCTU  (O69668), 
EIF3E_YARLI (Q6C0Q2), ELP2_DROME  (Q7K4B3), FABH_STRLI  (Q9F6D4), 
GCSP_GLUOX  (Q5FRY0), GLGA2_NOSS1 (Q8Z0Q9), GLGA2_SYNY3 (P72623), 
GLGB_BURTA  (Q2T6R3), GOPC_HUMAN  (Q9HD26), GOPC_MOUSE  (Q8BH60), 
GOPC_PONAB  (Q5RD32), GOX_ASPNG   (P13006), GP183_RAT   (D4A7K7), 
GPMI_GLUOX  (Q5FU33), GPMI_RHOPA  (Q6NCX7), GPMI_STRCO  (Q9L214), 
GRP1_PETHY  (P09789), HDA4_CAEEL  (O17323), HIS1_PROMM  (Q7V6G9), 
HIS4_DEIRA  (Q9RRJ5), HIS4_VIBCH  (Q9KSW9), HOX16_ORYSI (A2X980), 
HOX16_ORYSJ (Q6YWR4), IF61_TRYCC  (Q4E097), ILVD_MYCBO  (P65155), 
ILVD_MYCTO  (P9WKJ4), ILVD_MYCTU  (P9WKJ5), K0556_XENLA (Q5XK85), 
KPR5_SCHPO  (P87171), LCKB2_ARATH (O82359), LRRK2_HUMAN (Q5S007), 
LRRK2_MOUSE (Q5S006), MALD1_HUMAN (Q9BSK0), MDV1_USTMA  (Q4P8R5), 
MEND_DECAR  (Q47DK0), MQO_AGRT5   (Q8UH73), MSBA_METCA  (Q60AA3), 
MURD_NOVAD  (Q2G997), NORG_STAA3  (Q2FKF1), NORG_STAA8  (Q2G1P1), 
NORG_STAAB  (Q2YUS3), NORG_STAAC  (Q5HJR1), NORG_STAAM  (Q99XA5), 
NORG_STAAN  (Q7A875), NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), 
NUD24_ARATH (P0C026), PCBA_PROMP  (O07295), PDXK_TREPA  (O83153), 
PEPL1_HUMAN (Q8NDH3), PEPL1_MOUSE (Q6NSR8), PEPL1_PONAB (Q5R7G6), 
PGLR1_MAIZE (P26216), PGLR2_JUNAS (Q9FY19), PGLR2_MAIZE (P35338), 
PGLR3_MAIZE (P35339), PGLR4_ARATH (Q949Z1), PGLR_ACTDE  (P35336), 
PGLR_GOSBA  (Q39766), PGLR_GOSHI  (Q39786), PGLR_MALDO  (P48978), 
PGLR_OENOR  (P24548), PGLR_PERAE  (Q02096), PGLR_PRUPE  (P48979), 
PGLR_SOLLC  (P05117), PGLR_TOBAC  (Q05967), PHNW_PSEAB  (Q02JF1), 
PHNW_PSEAE  (Q9I434), PHNW_PSEPF  (Q3K9Y3), POLG_HAV88  (Q8V0N6), 
POLG_HAVCF  (Q5Y944), POLG_HAVCR  (P06442), POLG_HAVGB  (Q67825), 
POLG_HAVH2  (A3FMB2), POLG_HAVHA  (Q05794), POLG_HAVHM  (P08617), 
POLG_HAVJ8  (A5LGW7), POLG_HAVLA  (P06441), POLG_HAVMB  (P13901), 
POLG_HAVNO  (Q9DWR1), POLG_HAVS2  (P14553), POLG_HAVSC  (P31788), 
PP16A_HUMAN (Q96I34), PP16A_MOUSE (Q923M0), PPE14_MYCTO (P9WI32), 
PPE14_MYCTU (P9WI33), PRO1_CAEBR  (A8WSU9), PRO1_CAEEL  (Q22006), 
PROF_TRYBB  (Q26734), PRPD1_CORGL (Q8NSH9), PULA_THEMA  (O33840), 
PYRE_BACHD  (Q9K9W3), PYRE_COXBU  (Q45918), PYRE_ENTFA  (P0DH75), 
PYRE_ENTFO  (F2MMN7), PYRE_FUSNN  (P58856), PYRE_LACJO  (Q74J27), 
PYRE_LACPL  (P77889), PYRE_LISIN  (Q92AH7), PYRE_LISMF  (Q71YI5), 
PYRE_LISMO  (Q8Y668), PYRE_MYCPE  (Q8EUY4), PYRE_OCEIH  (Q8ER35), 
PYRE_STAAC  (Q5HGM7), PYRE_STAAM  (P65916), PYRE_STAAN  (P99144), 
PYRE_STAAR  (Q6GHN0), PYRE_STAAS  (Q6GA08), PYRE_STAAW  (Q8NX25), 
PYRE_STAEQ  (Q5HPY6), PYRE_STAES  (Q8CSW7), PYRE_STAHJ  (Q4L5Q7), 
PYRE_STAS1  (Q49WY6), QRT2_ARATH  (Q9SFB7), RAV1_SCHPO  (Q9Y817), 
RETST_HUMAN (Q6NUM9), RH13_ARATH  (Q93Y39), RIBA_PECAS  (Q6D5U5), 
RIBA_SALCH  (Q57NU9), RIBA_SALPA  (Q5PCY8), RIBA_SALTI  (P66031), 
RIBA_SALTY  (P66030), RIBA_YERPE  (Q8ZEF0), RIBA_YERPS  (Q66AI6), 
RL25_BORBR  (Q7WNY3), RL25_BORPA  (Q7W180), RL25_BORPE  (Q7VUH2), 
RL6_MYCS5   (Q4A5D6), RLMG_PSEE4  (Q1I4K4), RLMG_PSEPG  (B0KHQ8), 
RLMG_PSEPW  (B1J2W7), RS8_FRAAA   (Q0RRQ7), RTBDN_CANFA (Q4TUC0), 
SHBG_CROCR  (A0EQL2), SL11_ORYSI  (A2ZLU6), SL11_ORYSJ  (Q0IMG9), 
SYE_LEPBA   (B0SCM4), SYE_LEPBP   (B0SKQ2), TAF2_YEAST  (P23255), 
TAF5_YEAST  (P38129), TRM82_VANPO (A7TEN6), TRPG_THEKO  (Q9YGB2), 
TSAD_CLOTH  (A3DJ13), TSAD_THETN  (Q8RC98), TUAE_BACSU  (O32270), 
UBR2_HUMAN  (Q8IWV8), UBR2_MOUSE  (Q6WKZ8), USB1_DANRE  (Q6DEF6), 
WDR12_DICDI (Q54W52), WDR6_SCHPO  (Q9USZ0), Y1082_HAEIN (P45026), 
Y1534_ARATH (C0LGG7), Y2599_MYCTO (P9WL68), Y2599_MYCTU (P9WL69), 
Y5258_ARATH (Q9FK81), Y854_THICR  (Q31HC3), YTM1_PICGU  (A5DL92)
» More

PDB
[Detailed view]
11 PDB

1A12; 1I2M; 3MVD; 3OF7; 4D9S; 4DNU; 4DNV; 4DNW; 4JHN; 4JHP; 4O2W

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