Entry: PS00626

General information about the entry

Entry name [info] RCC1_2
Accession [info] PS00626
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00544

Name and characterization of the entry

Description [info] Regulator of chromosome condensation (RCC1) signature 2.
Pattern [info]
[LIVMFA]-[STAGC](2)-G-x-{TAV}-H-[STAGLI]-[LIVMFA]-{KI}-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 345 in 280 different sequences
Number of true positive hits 126 in 61 different sequences
Number of 'unknown' hits 0
Number of false positive hits 219 in 219 different sequences
Number of false negative sequences 18
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 36.52 %
Recall (true positives / (true positives + false negatives)) 87.50 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
61 sequences

ALS2_DROME  (Q9VNZ8    ), ALS2_HUMAN  (Q96Q42    ), ALS2_MOUSE  (Q920R0    ), 
ALS2_PANTR  (Q5BIW4    ), ALS2_RAT    (P0C5Y8    ), ATS1_YEAST  (P31386    ), 
FMP25_YEAST (Q08023    ), GEFC_DICDI  (Q8IS20    ), HERC1_HUMAN (Q15751    ), 
HERC2_DROME (Q9VR91    ), HERC2_HUMAN (O95714    ), HERC2_MOUSE (Q4U2R1    ), 
HERC3_HUMAN (Q15034    ), HERC4_HUMAN (Q5GLZ8    ), HERC4_MOUSE (Q6PAV2    ), 
HERC4_RAT   (Q5PQN1    ), HERC5_HUMAN (Q9UII4    ), HERC6_HUMAN (Q8IVU3    ), 
HERC6_MOUSE (F2Z461    ), HIW_DROME   (Q9NB71    ), MYCB2_HUMAN (O75592    ), 
MYCB2_MOUSE (Q7TPH6    ), NEK9_XENLA  (Q7ZZC8    ), RCBT1_HUMAN (Q8NDN9    ), 
RCBT1_MOUSE (Q6NXM2    ), RCBT2_HUMAN (O95199    ), RCBT2_MOUSE (Q99LJ7    ), 
RCBT2_PONAB (Q5RCZ7    ), RCBT2_RAT   (Q6P798    ), RCC1_CAEEL  (Q18211    ), 
RCC1_CANAX  (P52499    ), RCC1_DROME  (P25171    ), RCC1_HUMAN  (P18754    ), 
RCC1_MESAU  (P23800    ), RCC1_MOUSE  (Q8VE37    ), RCC1_SCHPO  (P28745    ), 
RCC1_XENLA  (P25183    ), RCC1_YEAST  (P21827    ), RCC2_DANRE  (Q6NYE2    ), 
RCC2_HUMAN  (Q9P258    ), RCC2_MOUSE  (Q8BK67    ), RCC2_XENLA  (Q52KW8    ), 
RCCD1_HUMAN (A6NED2    ), RCCD1_MACFA (Q4R828    ), RCCD1_MOUSE (Q8BTU7    ), 
RCCDA_DICDI (Q54X24    ), RCCDB_DICDI (P0C7G9    ), RPGRH_CAEEL (Q5DX34    ), 
RPGR_CANLF  (Q9N1T2    ), RPGR_HUMAN  (Q92834    ), RPGR_MOUSE  (Q9R0X5    ), 
RPM1_CAEEL  (Q17551    ), SAF1_YEAST  (P38352    ), SPKUL_DICDI (Q8SSY6    ), 
SRGEF_BOVIN (Q3MHW0    ), SRGEF_HUMAN (Q9UGK8    ), SRGEF_MOUSE (Q80YD6    ), 
TIRA_DICDI  (Q54HT1    ), UVR8_ARATH  (Q9FN03    ), WBS16_HUMAN (Q96I51    ), 
YF94_SCHPO  (O42645    )
» more

UniProtKB/Swiss-Prot
False negative sequences
18 sequences

BTB1_SCHPO  (O74881    ), FBX24_HUMAN (O75426    ), FBX24_MACFA (Q4R327    ), 
FBX24_MOUSE (Q9D417    ), GACGG_DICDI (Q54VW7    ), IBTK_HUMAN  (Q9P2D0    ), 
IBTK_MOUSE  (Q6ZPR6    ), IBTK_XENLA  (Q6NRS1    ), NEK8_DANRE  (Q90XC2    ), 
NEK8_HUMAN  (Q86SG6    ), NEK8_MOUSE  (Q91ZR4    ), NEK8_RAT    (D3ZGQ5    ), 
NEK9_HUMAN  (Q8TD19    ), NEK9_MOUSE  (Q8K1R7    ), POF9_SCHPO  (O74381    ), 
RCCDC_DICDI (Q54Q89    ), TITIN_MOUSE (A2ASS6    ), WBS16_MOUSE (Q9CYF5    )
» more

UniProtKB/Swiss-Prot
False positive sequences
219 sequences

095R_FRG3G  (Q6GZN0    ), ABRB_ABRPR  (Q06077    ), ACCD1_ROSS1 (A5UQC0    ), 
ACUK_AJECG  (C0NCM1    ), ACUK_AJECN  (A6R213    ), ACYP_PECAS  (Q6D6C4    ), 
ADPG1_ARATH (O23147    ), ADPG2_ARATH (Q8RY29    ), AGS_AGRRH   (P27875    ), 
AHPF_STAAM  (P66012    ), AHPF_STAAN  (P99118    ), AHPF_STAAR  (Q6GJR8    ), 
AHPF_STAAS  (Q6GC92    ), AHPF_STAAW  (P66013    ), ALAT_SCHPO  (Q10334    ), 
AREL1_HUMAN (O15033    ), AREL1_MOUSE (Q8CHG5    ), AROA2_STRCO (Q9L213    ), 
AROC_LEIXX  (Q6AF97    ), AROC_STRMU  (Q8DUW1    ), AROC_STRP6  (Q5XCT6    ), 
AROC_STRP8  (Q8P1H5    ), AROC_STRPG  (A2RF78    ), AROC_STRSV  (A3CNV6    ), 
AROC_TROW8  (Q83HU6    ), AROC_TROWT  (Q83GD5    ), ARSB1_ECOLX (P08691    ), 
ASUN_XENLA  (Q6GLY5    ), ASUN_XENTR  (Q6DIK0    ), AT18C_ARATH (Q8GYD7    ), 
AT18D_ARATH (Q0WPK3    ), ATGT_SULTO  (Q975U5    ), ATTY_TRYCR  (P33447    ), 
AXE1_ASPAW  (Q92194    ), AXE1_ASPFI  (Q96W96    ), AXE1_ASPFU  (Q4WBW4    ), 
AXE1_ASPNC  (A2QZI3    ), AXE1_ASPTN  (Q0C8Z1    ), AXE1_NEOFI  (A1DBP9    ), 
BASB_HALS3  (B0R6I5    ), BCH_HAEPL   (Q9SPK6    ), C508B_DICDI (Q54SK0    ), 
CLH_DROME   (P29742    ), COBN_PSEAE  (Q9HZQ3    ), COPE2_ARATH (O64748    ), 
CSGE_ECO57  (P0AE97    ), CSGE_ECOL6  (P0AE96    ), CSGE_ECOLI  (P0AE95    ), 
CTAA_PARDP  (A1B8C2    ), CTAA_RUEPO  (Q5LRS1    ), CYLD_BOVIN  (Q1RMU2    ), 
DAPAT_NATTJ (B2A250    ), DDB1A_ARATH (Q9M0V3    ), DDB1B_ARATH (O49552    ), 
DDB1_SOLCE  (Q6E7D1    ), DDB1_SOLLC  (Q6QNU4    ), DLG5_HUMAN  (Q8TDM6    ), 
DNAJ_STRPN  (P95830    ), DNAJ_STRR6  (Q8CWT2    ), DTDA_HALS3  (B0R384    ), 
DTDA_HALSA  (Q9HS70    ), EGFL8_PIG   (A5A8Y8    ), EGTE_MYCTU  (O69668    ), 
EIF3E_YARLI (Q6C0Q2    ), ELP2_DROME  (Q7K4B3    ), FABH_STRLI  (Q9F6D4    ), 
GCSP_GLUOX  (Q5FRY0    ), GLGA2_NOSS1 (Q8Z0Q9    ), GLGA2_SYNY3 (P72623    ), 
GLGB_BURTA  (Q2T6R3    ), GOPC_HUMAN  (Q9HD26    ), GOPC_MOUSE  (Q8BH60    ), 
GOPC_PONAB  (Q5RD32    ), GOX_ASPNG   (P13006    ), GP183_RAT   (D4A7K7    ), 
GPMI_GLUOX  (Q5FU33    ), GPMI_RHOPA  (Q6NCX7    ), GPMI_STRCO  (Q9L214    ), 
GRP1_PETHY  (P09789    ), HDA4_CAEEL  (O17323    ), HIS1_PROMM  (Q7V6G9    ), 
HIS4_DEIRA  (Q9RRJ5    ), HIS4_VIBCH  (Q9KSW9    ), HOX16_ORYSI (A2X980    ), 
HOX16_ORYSJ (Q6YWR4    ), IF61_TRYCC  (Q4E097    ), ILVD_MYCBO  (P65155    ), 
ILVD_MYCTO  (P9WKJ4    ), ILVD_MYCTU  (P9WKJ5    ), K0556_XENLA (Q5XK85    ), 
KPR5_SCHPO  (P87171    ), LCKB2_ARATH (O82359    ), LRRK2_HUMAN (Q5S007    ), 
LRRK2_MOUSE (Q5S006    ), MALD1_HUMAN (Q9BSK0    ), MDV1_USTMA  (Q4P8R5    ), 
MEND_DECAR  (Q47DK0    ), MQO_AGRFC   (Q8UH73    ), MSBA_METCA  (Q60AA3    ), 
MURD_NOVAD  (Q2G997    ), NORG_STAA3  (Q2FKF1    ), NORG_STAA8  (Q2G1P1    ), 
NORG_STAAB  (Q2YUS3    ), NORG_STAAC  (Q5HJR1    ), NORG_STAAM  (Q99XA5    ), 
NORG_STAAN  (Q7A875    ), NORR_VIBVU  (Q8D4F9    ), NORR_VIBVY  (Q7MFY9    ), 
NUD24_ARATH (P0C026    ), PCBA_PROMP  (O07295    ), PDXK_TREPA  (O83153    ), 
PEPL1_HUMAN (Q8NDH3    ), PEPL1_MOUSE (Q6NSR8    ), PEPL1_PONAB (Q5R7G6    ), 
PGLR1_MAIZE (P26216    ), PGLR2_JUNAS (Q9FY19    ), PGLR2_MAIZE (P35338    ), 
PGLR3_MAIZE (P35339    ), PGLR4_ARATH (Q949Z1    ), PGLR_ACTDE  (P35336    ), 
PGLR_GOSBA  (Q39766    ), PGLR_GOSHI  (Q39786    ), PGLR_MALDO  (P48978    ), 
PGLR_OENOR  (P24548    ), PGLR_PERAE  (Q02096    ), PGLR_PRUPE  (P48979    ), 
PGLR_SOLLC  (P05117    ), PGLR_TOBAC  (Q05967    ), PHNW_PSEAB  (Q02JF1    ), 
PHNW_PSEAE  (Q9I434    ), PHNW_PSEPF  (Q3K9Y3    ), POLG_HAV88  (Q8V0N6    ), 
POLG_HAVCF  (Q5Y944    ), POLG_HAVCR  (P06442    ), POLG_HAVGB  (Q67825    ), 
POLG_HAVH2  (A3FMB2    ), POLG_HAVHA  (Q05794    ), POLG_HAVHM  (P08617    ), 
POLG_HAVJ8  (A5LGW7    ), POLG_HAVLA  (P06441    ), POLG_HAVMB  (P13901    ), 
POLG_HAVNO  (Q9DWR1    ), POLG_HAVS2  (P14553    ), POLG_HAVSC  (P31788    ), 
PP16A_HUMAN (Q96I34    ), PP16A_MOUSE (Q923M0    ), PPE14_MYCTO (P9WI32    ), 
PPE14_MYCTU (P9WI33    ), PRO1_CAEBR  (A8WSU9    ), PRO1_CAEEL  (Q22006    ), 
PROF_TRYBB  (Q26734    ), PRPD1_CORGL (Q8NSH9    ), PULA_THEMA  (O33840    ), 
PYRE_BACHD  (Q9K9W3    ), PYRE_COXBU  (Q45918    ), PYRE_ENTFA  (P0DH75    ), 
PYRE_ENTFO  (F2MMN7    ), PYRE_FUSNN  (P58856    ), PYRE_LACJO  (Q74J27    ), 
PYRE_LACPL  (P77889    ), PYRE_LISIN  (Q92AH7    ), PYRE_LISMF  (Q71YI5    ), 
PYRE_LISMO  (Q8Y668    ), PYRE_MYCPE  (Q8EUY4    ), PYRE_OCEIH  (Q8ER35    ), 
PYRE_STAAC  (Q5HGM7    ), PYRE_STAAM  (P65916    ), PYRE_STAAN  (P99144    ), 
PYRE_STAAR  (Q6GHN0    ), PYRE_STAAS  (Q6GA08    ), PYRE_STAAW  (Q8NX25    ), 
PYRE_STAEQ  (Q5HPY6    ), PYRE_STAES  (Q8CSW7    ), PYRE_STAHJ  (Q4L5Q7    ), 
PYRE_STAS1  (Q49WY6    ), QRT2_ARATH  (Q9SFB7    ), RAV1_SCHPO  (Q9Y817    ), 
RETST_HUMAN (Q6NUM9    ), RH13_ARATH  (Q93Y39    ), RIBA_PECAS  (Q6D5U5    ), 
RIBA_SALCH  (Q57NU9    ), RIBA_SALPA  (Q5PCY8    ), RIBA_SALTI  (P66031    ), 
RIBA_SALTY  (P66030    ), RIBA_YERPE  (Q8ZEF0    ), RIBA_YERPS  (Q66AI6    ), 
RL25_BORBR  (Q7WNY3    ), RL25_BORPA  (Q7W180    ), RL25_BORPE  (Q7VUH2    ), 
RL6_MYCS5   (Q4A5D6    ), RLMG_PSEE4  (Q1I4K4    ), RLMG_PSEPG  (B0KHQ8    ), 
RLMG_PSEPW  (B1J2W7    ), RS8_FRAAA   (Q0RRQ7    ), RTBDN_CANLF (Q4TUC0    ), 
SHBG_CROCR  (A0EQL2    ), SL11_ORYSI  (A2ZLU6    ), SL11_ORYSJ  (Q0IMG9    ), 
SYE_LEPBA   (B0SCM4    ), SYE_LEPBP   (B0SKQ2    ), TAF2_YEAST  (P23255    ), 
TAF5_YEAST  (P38129    ), TRM82_VANPO (A7TEN6    ), TRPG_THEKO  (Q9YGB2    ), 
TSAD_CALS4  (Q8RC98    ), TSAD_CLOTH  (A3DJ13    ), TUAE_BACSU  (O32270    ), 
UBR2_HUMAN  (Q8IWV8    ), UBR2_MOUSE  (Q6WKZ8    ), USB1_DANRE  (Q6DEF6    ), 
WDR12_DICDI (Q54W52    ), WDR6_SCHPO  (Q9USZ0    ), Y1082_HAEIN (P45026    ), 
Y1534_ARATH (C0LGG7    ), Y2599_MYCTO (P9WL68    ), Y2599_MYCTU (P9WL69    ), 
Y5258_ARATH (Q9FK81    ), Y854_THICR  (Q31HC3    ), YTM1_PICGU  (A5DL92    )
» more

PDB
[Detailed view]
17 PDB

1A12; 1I2M; 3MVD; 3OF7; 4D4O; 4D4P; 4D4Q; 4D9S; 4DNU; 4DNV; 4DNW; 4JHN; 4JHP; 4O2W; 4QAM; 4X33; 5HQ2
» more

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