Entry: PS00626

General information about the entry

Entry name [info] RCC1_2
Accession [info] PS00626
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00544

Name and characterization of the entry

Description [info] Regulator of chromosome condensation (RCC1) signature 2.
Pattern [info]
[LIVMFA]-[STAGC](2)-G-x-{TAV}-H-[STAGLI]-[LIVMFA]-{KI}-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 344 in 279 different sequences
Number of true positive hits 125 in 60 different sequences
Number of 'unknown' hits 0
Number of false positive hits 219 in 219 different sequences
Number of false negative sequences 18
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 36.34 %
Recall (true positives / (true positives + false negatives)) 87.41 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
60 sequences

ALS2_HUMAN  (Q96Q42), ALS2_MOUSE  (Q920R0), ALS2_PANTR  (Q5BIW4), 
ALS2_RAT    (P0C5Y8), ATS1_YEAST  (P31386), FMP25_YEAST (Q08023), 
GEFC_DICDI  (Q8IS20), HERC1_HUMAN (Q15751), HERC2_DROME (Q9VR91), 
HERC2_HUMAN (O95714), HERC2_MOUSE (Q4U2R1), HERC3_HUMAN (Q15034), 
HERC4_HUMAN (Q5GLZ8), HERC4_MOUSE (Q6PAV2), HERC4_RAT   (Q5PQN1), 
HERC5_HUMAN (Q9UII4), HERC6_HUMAN (Q8IVU3), HERC6_MOUSE (F2Z461), 
HIW_DROME   (Q9NB71), MYCB2_HUMAN (O75592), MYCB2_MOUSE (Q7TPH6), 
NEK9_XENLA  (Q7ZZC8), RCBT1_HUMAN (Q8NDN9), RCBT1_MOUSE (Q6NXM2), 
RCBT2_HUMAN (O95199), RCBT2_MOUSE (Q99LJ7), RCBT2_PONAB (Q5RCZ7), 
RCBT2_RAT   (Q6P798), RCC1_CAEEL  (Q18211), RCC1_CANAX  (P52499), 
RCC1_DROME  (P25171), RCC1_HUMAN  (P18754), RCC1_MESAU  (P23800), 
RCC1_MOUSE  (Q8VE37), RCC1_SCHPO  (P28745), RCC1_XENLA  (P25183), 
RCC1_YEAST  (P21827), RCC2_DANRE  (Q6NYE2), RCC2_HUMAN  (Q9P258), 
RCC2_MOUSE  (Q8BK67), RCC2_XENLA  (Q52KW8), RCCD1_HUMAN (A6NED2), 
RCCD1_MACFA (Q4R828), RCCD1_MOUSE (Q8BTU7), RCCDA_DICDI (Q54X24), 
RCCDB_DICDI (P0C7G9), RPGRH_CAEEL (Q5DX34), RPGR_CANFA  (Q9N1T2), 
RPGR_HUMAN  (Q92834), RPGR_MOUSE  (Q9R0X5), RPM1_CAEEL  (Q17551), 
SAF1_YEAST  (P38352), SPKUL_DICDI (Q8SSY6), SRGEF_BOVIN (Q3MHW0), 
SRGEF_HUMAN (Q9UGK8), SRGEF_MOUSE (Q80YD6), TIRA_DICDI  (Q54HT1), 
UVR8_ARATH  (Q9FN03), WBS16_HUMAN (Q96I51), YF94_SCHPO  (O42645)
» More

UniProtKB/Swiss-Prot
False negative sequences
18 sequences

BTB1_SCHPO  (O74881), FBX24_HUMAN (O75426), FBX24_MACFA (Q4R327), 
FBX24_MOUSE (Q9D417), GACGG_DICDI (Q54VW7), IBTK_HUMAN  (Q9P2D0), 
IBTK_MOUSE  (Q6ZPR6), IBTK_XENLA  (Q6NRS1), NEK8_DANRE  (Q90XC2), 
NEK8_HUMAN  (Q86SG6), NEK8_MOUSE  (Q91ZR4), NEK8_RAT    (D3ZGQ5), 
NEK9_HUMAN  (Q8TD19), NEK9_MOUSE  (Q8K1R7), POF9_SCHPO  (O74381), 
RCCDC_DICDI (Q54Q89), TITIN_MOUSE (A2ASS6), WBS16_MOUSE (Q9CYF5)
» More

UniProtKB/Swiss-Prot
False positive sequences
219 sequences

095R_FRG3G  (Q6GZN0), ABRB_ABRPR  (Q06077), ACCD1_ROSS1 (A5UQC0), 
ACUK_AJECG  (C0NCM1), ACUK_AJECN  (A6R213), ACYP_PECAS  (Q6D6C4), 
ADPG1_ARATH (O23147), ADPG2_ARATH (Q8RY29), AGS_AGRRH   (P27875), 
AHPF_STAAM  (P66012), AHPF_STAAN  (P99118), AHPF_STAAR  (Q6GJR8), 
AHPF_STAAS  (Q6GC92), AHPF_STAAW  (P66013), ALAT_SCHPO  (Q10334), 
AREL1_HUMAN (O15033), AREL1_MOUSE (Q8CHG5), AROA2_STRCO (Q9L213), 
AROC_LEIXX  (Q6AF97), AROC_STRMU  (Q8DUW1), AROC_STRP6  (Q5XCT6), 
AROC_STRP8  (Q8P1H5), AROC_STRPG  (A2RF78), AROC_STRSV  (A3CNV6), 
AROC_TROW8  (Q83HU6), AROC_TROWT  (Q83GD5), ARSB1_ECOLX (P08691), 
ASUN_XENLA  (Q6GLY5), ASUN_XENTR  (Q6DIK0), AT18C_ARATH (Q8GYD7), 
AT18D_ARATH (Q0WPK3), ATGT_SULTO  (Q975U5), ATTY_TRYCR  (P33447), 
AXE1_ASPAW  (Q92194), AXE1_ASPFI  (Q96W96), AXE1_ASPFU  (Q4WBW4), 
AXE1_ASPNC  (A2QZI3), AXE1_ASPTN  (Q0C8Z1), AXE1_NEOFI  (A1DBP9), 
BASB_HALS3  (B0R6I5), BCH_HAEPL   (Q9SPK6), C508B_DICDI (Q54SK0), 
CLH_DROME   (P29742), COBN_PSEAE  (Q9HZQ3), COPE2_ARATH (O64748), 
CSGE_ECO57  (P0AE97), CSGE_ECOL6  (P0AE96), CSGE_ECOLI  (P0AE95), 
CTAA_PARDP  (A1B8C2), CTAA_RUEPO  (Q5LRS1), CYLD_BOVIN  (Q1RMU2), 
DAPAT_NATTJ (B2A250), DDB1A_ARATH (Q9M0V3), DDB1B_ARATH (O49552), 
DDB1_SOLCE  (Q6E7D1), DDB1_SOLLC  (Q6QNU4), DLG5_HUMAN  (Q8TDM6), 
DNAJ_STRPN  (P95830), DNAJ_STRR6  (Q8CWT2), DTDA_HALS3  (B0R384), 
DTDA_HALSA  (Q9HS70), EGFL8_PIG   (A5A8Y8), EGTE_MYCTU  (O69668), 
EIF3E_YARLI (Q6C0Q2), ELP2_DROME  (Q7K4B3), FABH_STRLI  (Q9F6D4), 
GCSP_GLUOX  (Q5FRY0), GLGA2_NOSS1 (Q8Z0Q9), GLGA2_SYNY3 (P72623), 
GLGB_BURTA  (Q2T6R3), GOPC_HUMAN  (Q9HD26), GOPC_MOUSE  (Q8BH60), 
GOPC_PONAB  (Q5RD32), GOX_ASPNG   (P13006), GP183_RAT   (D4A7K7), 
GPMI_GLUOX  (Q5FU33), GPMI_RHOPA  (Q6NCX7), GPMI_STRCO  (Q9L214), 
GRP1_PETHY  (P09789), HDA4_CAEEL  (O17323), HIS1_PROMM  (Q7V6G9), 
HIS4_DEIRA  (Q9RRJ5), HIS4_VIBCH  (Q9KSW9), HOX16_ORYSI (A2X980), 
HOX16_ORYSJ (Q6YWR4), IF61_TRYCC  (Q4E097), ILVD_MYCBO  (P65155), 
ILVD_MYCTO  (P9WKJ4), ILVD_MYCTU  (P9WKJ5), K0556_XENLA (Q5XK85), 
KPR5_SCHPO  (P87171), LCKB2_ARATH (O82359), LRRK2_HUMAN (Q5S007), 
LRRK2_MOUSE (Q5S006), MALD1_HUMAN (Q9BSK0), MDV1_USTMA  (Q4P8R5), 
MEND_DECAR  (Q47DK0), MQO_AGRFC   (Q8UH73), MSBA_METCA  (Q60AA3), 
MURD_NOVAD  (Q2G997), NORG_STAA3  (Q2FKF1), NORG_STAA8  (Q2G1P1), 
NORG_STAAB  (Q2YUS3), NORG_STAAC  (Q5HJR1), NORG_STAAM  (Q99XA5), 
NORG_STAAN  (Q7A875), NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), 
NUD24_ARATH (P0C026), PCBA_PROMP  (O07295), PDXK_TREPA  (O83153), 
PEPL1_HUMAN (Q8NDH3), PEPL1_MOUSE (Q6NSR8), PEPL1_PONAB (Q5R7G6), 
PGLR1_MAIZE (P26216), PGLR2_JUNAS (Q9FY19), PGLR2_MAIZE (P35338), 
PGLR3_MAIZE (P35339), PGLR4_ARATH (Q949Z1), PGLR_ACTDE  (P35336), 
PGLR_GOSBA  (Q39766), PGLR_GOSHI  (Q39786), PGLR_MALDO  (P48978), 
PGLR_OENOR  (P24548), PGLR_PERAE  (Q02096), PGLR_PRUPE  (P48979), 
PGLR_SOLLC  (P05117), PGLR_TOBAC  (Q05967), PHNW_PSEAB  (Q02JF1), 
PHNW_PSEAE  (Q9I434), PHNW_PSEPF  (Q3K9Y3), POLG_HAV88  (Q8V0N6), 
POLG_HAVCF  (Q5Y944), POLG_HAVCR  (P06442), POLG_HAVGB  (Q67825), 
POLG_HAVH2  (A3FMB2), POLG_HAVHA  (Q05794), POLG_HAVHM  (P08617), 
POLG_HAVJ8  (A5LGW7), POLG_HAVLA  (P06441), POLG_HAVMB  (P13901), 
POLG_HAVNO  (Q9DWR1), POLG_HAVS2  (P14553), POLG_HAVSC  (P31788), 
PP16A_HUMAN (Q96I34), PP16A_MOUSE (Q923M0), PPE14_MYCTO (P9WI32), 
PPE14_MYCTU (P9WI33), PRO1_CAEBR  (A8WSU9), PRO1_CAEEL  (Q22006), 
PROF_TRYBB  (Q26734), PRPD1_CORGL (Q8NSH9), PULA_THEMA  (O33840), 
PYRE_BACHD  (Q9K9W3), PYRE_COXBU  (Q45918), PYRE_ENTFA  (P0DH75), 
PYRE_ENTFO  (F2MMN7), PYRE_FUSNN  (P58856), PYRE_LACJO  (Q74J27), 
PYRE_LACPL  (P77889), PYRE_LISIN  (Q92AH7), PYRE_LISMF  (Q71YI5), 
PYRE_LISMO  (Q8Y668), PYRE_MYCPE  (Q8EUY4), PYRE_OCEIH  (Q8ER35), 
PYRE_STAAC  (Q5HGM7), PYRE_STAAM  (P65916), PYRE_STAAN  (P99144), 
PYRE_STAAR  (Q6GHN0), PYRE_STAAS  (Q6GA08), PYRE_STAAW  (Q8NX25), 
PYRE_STAEQ  (Q5HPY6), PYRE_STAES  (Q8CSW7), PYRE_STAHJ  (Q4L5Q7), 
PYRE_STAS1  (Q49WY6), QRT2_ARATH  (Q9SFB7), RAV1_SCHPO  (Q9Y817), 
RETST_HUMAN (Q6NUM9), RH13_ARATH  (Q93Y39), RIBA_PECAS  (Q6D5U5), 
RIBA_SALCH  (Q57NU9), RIBA_SALPA  (Q5PCY8), RIBA_SALTI  (P66031), 
RIBA_SALTY  (P66030), RIBA_YERPE  (Q8ZEF0), RIBA_YERPS  (Q66AI6), 
RL25_BORBR  (Q7WNY3), RL25_BORPA  (Q7W180), RL25_BORPE  (Q7VUH2), 
RL6_MYCS5   (Q4A5D6), RLMG_PSEE4  (Q1I4K4), RLMG_PSEPG  (B0KHQ8), 
RLMG_PSEPW  (B1J2W7), RS8_FRAAA   (Q0RRQ7), RTBDN_CANFA (Q4TUC0), 
SHBG_CROCR  (A0EQL2), SL11_ORYSI  (A2ZLU6), SL11_ORYSJ  (Q0IMG9), 
SYE_LEPBA   (B0SCM4), SYE_LEPBP   (B0SKQ2), TAF2_YEAST  (P23255), 
TAF5_YEAST  (P38129), TRM82_VANPO (A7TEN6), TRPG_THEKO  (Q9YGB2), 
TSAD_CALS4  (Q8RC98), TSAD_CLOTH  (A3DJ13), TUAE_BACSU  (O32270), 
UBR2_HUMAN  (Q8IWV8), UBR2_MOUSE  (Q6WKZ8), USB1_DANRE  (Q6DEF6), 
WDR12_DICDI (Q54W52), WDR6_SCHPO  (Q9USZ0), Y1082_HAEIN (P45026), 
Y1534_ARATH (C0LGG7), Y2599_MYCTO (P9WL68), Y2599_MYCTU (P9WL69), 
Y5258_ARATH (Q9FK81), Y854_THICR  (Q31HC3), YTM1_PICGU  (A5DL92)
» More

PDB
[Detailed view]
16 PDB

1A12; 1I2M; 3MVD; 3OF7; 4D4O; 4D4P; 4D4Q; 4D9S; 4DNU; 4DNV; 4DNW; 4JHN; 4JHP; 4O2W; 4QAM; 4X33
» More

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