Entry: PS00628

General information about the entry
Entry name RIBOSOMAL_S19E
Accession number PS00628
Entry type PATTERN
Date JUN-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00546
Name and characterization of the entry
DescriptionRibosomal protein S19e signature.
Pattern P-x(6)-[SANG]-x(2)-[LIVMAC]-x-R-x-[ALIV]-[LV]-[QH]-x-L-[EQ].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 35 hits in 35 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 35 hits in 35 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 92.11 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RS191_ARATH (Q9SGA6), RS192_ARATH (Q9LF30), RS193_ARATH (Q9FNP8), 
RS19A_DROME (P39018), RS19A_SCHPO (P58234), RS19A_YEAST (P07280), 
RS19B_DROME (Q7KS38), RS19B_SCHPO (P79016), RS19B_YEAST (P07281), 
RS19E_AERPE (Q9YD22), RS19E_ARCFU (O28210), RS19E_HALMA (P19952), 
RS19E_METJA (P54057), RS19E_METTH (O27653), RS19E_PYRAB (Q9V0G8), 
RS19E_PYRHO (O59041), RS19G_ASCSU (P24494), RS19S_ASCSU (P39698), 
RS19_ARGIR  (Q8ITC3), RS19_BOVIN  (Q32PD5), RS19_BRABE  (Q8T5Z4), 
RS19_CAEEL  (O18650), RS19_EMENI  (P27073), RS19_ENTHI  (O15631), 
RS19_GILMI  (Q9DFR5), RS19_HUMAN  (P39019), RS19_ICTPU  (Q90YQ4), 
RS19_MOUSE  (Q9CZX8), RS19_MYAAR  (Q94613), RS19_MYXGL  (Q9Y0H3), 
RS19_ORYSJ  (P40978), RS19_PAGMA  (P61155), RS19_PIG    (Q29308), 
RS19_PONAB  (Q5R8M9), RS19_RAT    (P17074)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RS19E_THEAC (Q9HM21), RS19E_THEVO (Q97CU4), RS19_DICDI  (Q54X51)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 2V7F; 3IZB; 3U5C; 3U5G;

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