Entry: PS00669

General information about the entry
Entry name GAS_VESICLE_A_2
Accession number PS00669
Entry type PATTERN
Date JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00207
Name and characterization of the entry
DescriptionGas vesicles protein GVPa signature 2.
Pattern R-[LIVA](3)-A-[GS]-[LIVMFY]-x-[TK]-x(3)-[YFI]-[AG].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 39 hits in 39 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 39 hits in 39 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 5
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.64 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
GVPA1_HALSA (P08958), GVPA1_STRCO (Q9ZC13), GVPA2_HALSA (P08959), 
GVPA2_STRCO (Q9RJB4), GVPA_AMOPE  (P80998), GVPA_ANAFL  (P10397), 
GVPA_ANCAQ  (Q9RH31), GVPA_BACME  (O68680), GVPA_BRASO  (A4YMQ7), 
GVPA_FREDI  (P07060), GVPA_GEOUR  (A5G5E4), GVPA_HALMT  (P23761), 
GVPA_HALWD  (Q18JA1), GVPA_KORVE  (Q1INZ5), GVPA_MICAN  (B0JPK6), 
GVPA_MICBC  (P08412), GVPA_MYCSJ  (A3PZ32), GVPA_MYCSK  (A1UFH1), 
GVPA_MYCSS  (Q1B9J2), GVPA_NATVU  (O33397), GVPA_NOSP7  (B2J663), 
GVPA_NOSS1  (Q8XFU1), GVPA_OSCAG  (P0A3G0), GVPA_PLARU  (P0A3G1), 
GVPA_PSEAN  (P22453), GVPA_RHOS1  (A3PPT5), GVPA_RHOS4  (Q3IWB1), 
GVPA_RHOSK  (B9KU72), GVPA_SYNJA  (Q2JW39), GVPA_SYNJB  (Q2JKK1), 
GVPB_BACME  (O68677), GVPJ1_HALSA (P24374), GVPJ2_HALSA (P33956), 
GVPJ_BACME  (O68669), GVPJ_HALMT  (Q02235), GVPJ_PSEAN  (Q9AKS3), 
GVPM1_HALSA (P24377), GVPM2_HALSI (P33957), GVPM_HALMT  (Q02238)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
GVPJ1_STRCO (Q9ZC08), GVPJ2_STRCO (Q9RJA9), GVPJ_ANAFL  (P55147), 
GVPJ_NOSS1  (Q8YUT1), GVPS_BACME  (O68671)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
GVPA_DACSA  (Q9R5H8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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