Entry: PS00675

General information about the entry

Entry name [info] SIGMA54_INTERACT_1
Accession [info] PS00675
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); NOV-1995 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain ATP-binding region A signature.
Pattern [info]
[LIVMFY](3)-x-G-[DEQ]-[STE]-G-[STAV]-G-K-x(2)-[LIVMFY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 376 in 376 different sequences
Number of true positive hits 126 in 126 different sequences
Number of 'unknown' hits 0
Number of false positive hits 250 in 250 different sequences
Number of false negative sequences 25
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 33.51 %
Recall (true positives / (true positives + false negatives)) 83.44 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
126 sequences

ACOR_CUPNH  (P28614    ), ALGB_PSEAE  (P23747    ), ALGB_PSEPK  (Q88RJ6    ), 
ALGB_PSESM  (Q88AQ2    ), ANFA_AZOVI  (P12626    ), ATOC_ECOLI  (Q06065    ), 
DCTD_PSEAE  (Q9HU19    ), DCTD_RHILE  (P10046    ), DCTD_RHIME  (P13632    ), 
DHAR_CITFR  (P45512    ), DHAR_ECOLI  (P76016    ), FHLA_ECOLI  (P19323    ), 
FHLA_SALTS  (E1WAA4    ), FHLA_SALTY  (P0CL46    ), FLBD_CAUCR  (P17899    ), 
GLRR_ECOLI  (P0AFU4    ), HOXA_BRADU  (P31908    ), HOXA_CUPNH  (P29267    ), 
HRPR_PSESY  (P37930    ), HRPS_PSESH  (P26316    ), HYFR_ECOLI  (P71229    ), 
LIHY_GEOSE  (O85057    ), LUXO_VIBC3  (O87455    ), MDN1_DICDI  (Q869L3    ), 
NIFA_AZOBR  (P30667    ), NIFA_AZOC5  (P09133    ), NIFA_AZOLI  (P54929    ), 
NIFA_AZOVI  (P09570    ), NIFA_BRADU  (P05407    ), NIFA_ENTAG  (P54930    ), 
NIFA_HERSE  (P27713    ), NIFA_KLEOX  (P56266    ), NIFA_KLEPN  (P03027    ), 
NIFA_RHIEC  (P54931    ), NIFA_RHILE  (P09828    ), NIFA_RHILT  (P24426    ), 
NIFA_RHIME  (P03028    ), NIFA_RHOCA  (P0CY94    ), NIFA_RHOCB  (D5ARW9    ), 
NIFA_SINFN  (Q53206    ), NORR1_CUPNH (Q9K4V0    ), NORR2_CUPNH (Q9K4U8    ), 
NORR_AERHH  (A0KEJ0    ), NORR_AERS4  (A4STH5    ), NORR_CITK8  (A8ANR6    ), 
NORR_ECO24  (A7ZQD8    ), NORR_ECO27  (B7UHC1    ), NORR_ECO45  (B7MKH8    ), 
NORR_ECO55  (B7LEC0    ), NORR_ECO57  (Q8X854    ), NORR_ECO5E  (B5Z370    ), 
NORR_ECO7I  (B7NSI9    ), NORR_ECO81  (B7MZ04    ), NORR_ECO8A  (B7M9E6    ), 
NORR_ECOBW  (C4ZYV4    ), NORR_ECODH  (B1XCN6    ), NORR_ECOHS  (A8A3I6    ), 
NORR_ECOK1  (A1AEP9    ), NORR_ECOL5  (Q0TEH1    ), NORR_ECOL6  (Q8FEN6    ), 
NORR_ECOLC  (B1IUX0    ), NORR_ECOLI  (P37013    ), NORR_ECOLU  (B7N6T9    ), 
NORR_ECOSE  (B6I695    ), NORR_ECOSM  (B1LQ27    ), NORR_ECOUT  (Q1R7Z1    ), 
NORR_ENT38  (A4WDR5    ), NORR_ESCF3  (B7LW25    ), NORR_KLEP3  (B5XVA2    ), 
NORR_KLEP7  (A6TCX4    ), NORR_PECAS  (Q6D8R9    ), NORR_SALA4  (B5F363    ), 
NORR_SALAR  (A9MFX7    ), NORR_SALCH  (Q57KT4    ), NORR_SALDC  (B5FSZ0    ), 
NORR_SALEP  (B5QV88    ), NORR_SALG2  (B5RDG4    ), NORR_SALHS  (B4TF23    ), 
NORR_SALNS  (B4T3B0    ), NORR_SALPA  (Q5PF20    ), NORR_SALPB  (A9N0D7    ), 
NORR_SALPC  (C0PWN2    ), NORR_SALSV  (B4TT16    ), NORR_SALTI  (Q8Z4C6    ), 
NORR_SALTY  (Q8ZMJ8    ), NORR_SERP5  (A8GG93    ), NORR_SHIBS  (Q31X73    ), 
NORR_SHIDS  (Q32CL9    ), NORR_SHIF8  (Q0T1D4    ), NORR_SHIFL  (P59402    ), 
NORR_SHISS  (Q3YYF5    ), NORR_VIBF1  (Q5E3W8    ), NORR_VIBVU  (Q8D4F9    ), 
NORR_VIBVY  (Q7MFY9    ), NTRC_AZOC5  (Q04848    ), NTRC_BRASR  (P10576    ), 
NTRC_ECO57  (P0AFB9    ), NTRC_ECOLI  (P0AFB8    ), NTRC_KLEPN  (P03029    ), 
NTRC_PROHU  (P28787    ), NTRC_RHIME  (P10577    ), NTRC_RHOCB  (P09432    ), 
NTRC_SALTY  (P41789    ), PILR_PSEAE  (Q00934    ), QSEF_ECO57  (P0AFU5    ), 
RAC2A_ARATH (O49841    ), RAC2B_ARATH (Q9SF92    ), ROCR_BACSU  (P38022    ), 
SHS1_CANAL  (Q59VX8    ), STC_CLOBE   (P26047    ), TYRR_ECOLI  (P07604    ), 
TYRR_ENTAG  (Q9ZIB7    ), TYRR_HAEIN  (P44694    ), TYRR_SALTI  (P0A2D8    ), 
TYRR_SALTY  (P0A2D7    ), VNFA_AZOVI  (P12627    ), WTSA_PANSE  (P36219    ), 
XYLR_PSEPU  (P06519    ), YGEV_ECOLI  (Q46802    ), YHYA_PSESN  (Q01265    ), 
YQIR_BACSU  (P54529    ), ZRAR_ECO57  (Q8X613    ), ZRAR_ECOLI  (P14375    ), 
ZRAR_KLEOX  (Q9APD9    ), ZRAR_SALTI  (Q8Z333    ), ZRAR_SALTY  (P25852    )
» more

UniProtKB/Swiss-Prot
False negative sequences
25 sequences

ACOR_BACSU  (O31551    ), DGAR_SALT1  (D0ZLR9    ), HRPS_PSESY  (P37931    ), 
HUPR_RHOCA  (P26408    ), LEVR_BACSU  (P23914    ), LUXO_VIBCB  (A7MVC2    ), 
LUXO_VIBCH  (Q9KT84    ), LUXO_VIBHA  (P0C5S5    ), LUXO_VIBPA  (Q87MX7    ), 
LUXO_VIBVU  (Q8CWJ5    ), NTRC_AZOBR  (P45671    ), NTRXL_RICBR (Q1RJS1    ), 
NTRXL_RICCN (Q92HC2    ), NTRXL_RICFE (Q4UL27    ), NTRXL_RICPR (Q9ZCY9    ), 
NTRXL_RICTY (Q68WH4    ), NTRX_AZOC5  (Q04849    ), PGTA_SALTY  (P06184    ), 
PRPR_ECOLI  (P77743    ), PRPR_SALTY  (P74839    ), PSPF_ECOLI  (P37344    ), 
RTCR_ECOLI  (P38035    ), TYRR_CITBR  (O54426    ), Y4PA_SINFN  (P55610    ), 
YPLP_BACSU  (P54156    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

NIFA_AZOCH  (P56269    ), NTRC_VIBAL  (P19905    ), YFHA_KLEOX  (P21710    )

		
UniProtKB/Swiss-Prot
False positive sequences
250 sequences

DNAA_TROW8  (Q83NZ5    ), DNAA_TROWT  (Q83N52    ), GEM1_KLULA  (Q6CY37    ), 
GEM1_YARLI  (Q6C2J1    ), GEM1_YEAST  (P39722    ), HPRK2_OCEIH (Q8EL04    ), 
HPRK_NITEU  (Q82Y30    ), HPRK_UREPA  (Q9PR69    ), ISTB_BACFR  (Q64NF1    ), 
MDN1_YEAST  (Q12019    ), PEZT_STRPN  (Q97QZ1    ), PHNC2_HALWD (Q18H36    ), 
PHNC_HALSA  (Q9HNI8    ), PTLH_BORBR  (Q7WDT5    ), PTLH_BORPA  (Q7W2T7    ), 
PTLH_BORPE  (Q7VSX3    ), QKGA_DICDI  (Q8SSS9    ), RAA1A_ARATH (P28185    ), 
RAA1B_ARATH (Q39222    ), RAA1C_ARATH (Q9FK68    ), RAA1D_ARATH (Q9SN35    ), 
RAA1E_ARATH (O49513    ), RAA1F_ARATH (Q9FJH0    ), RAA1G_ARATH (Q9LK99    ), 
RAA1H_ARATH (Q1PEX3    ), RAA1I_ARATH (Q9S810    ), RAA2A_ARATH (O04486    ), 
RAA2B_ARATH (Q9LNW1    ), RAA2C_ARATH (Q96283    ), RAA2D_ARATH (Q9FIF9    ), 
RAB10_CANLF (P24409    ), RAB10_CHICK (Q5ZIT5    ), RAB10_DIPOM (P22127    ), 
RAB10_HUMAN (P61026    ), RAB10_MOUSE (P61027    ), RAB10_PONAB (Q5R5U1    ), 
RAB10_RAT   (P35281    ), RAB13_BOVIN (Q58DS5    ), RAB13_CANLF (F1PTE3    ), 
RAB13_DANRE (Q7T3A4    ), RAB13_HUMAN (P51153    ), RAB13_MESAU (Q5KTJ6    ), 
RAB13_MOUSE (Q9DD03    ), RAB13_RAT   (P35286    ), RAB15_BOVIN (Q1RMR4    ), 
RAB15_HUMAN (P59190    ), RAB15_MOUSE (Q8K386    ), RAB15_RAT   (P35289    ), 
RAB18_BOVIN (Q0IIG8    ), RAB18_CAEBR (P90726    ), RAB18_CAEEL (Q8MXS1    ), 
RAB18_CHICK (Q5ZLG1    ), RAB18_HUMAN (Q9NP72    ), RAB18_MOUSE (P35293    ), 
RAB18_PONAB (Q5R5H5    ), RAB18_RAT   (Q5EB77    ), RAB1A_ARATH (O23561    ), 
RAB1A_CANLF (P62822    ), RAB1A_DICDI (P34139    ), RAB1A_HUMAN (P62820    ), 
RAB1A_LYMST (Q05974    ), RAB1A_MOUSE (P62821    ), RAB1A_PIG   (Q52NJ2    ), 
RAB1A_RAT   (Q6NYB7    ), RAB1B_ARATH (Q38922    ), RAB1B_BOVIN (Q2HJH2    ), 
RAB1B_DICDI (P34140    ), RAB1B_HUMAN (Q9H0U4    ), RAB1B_MACFA (Q4R8X3    ), 
RAB1B_MOUSE (Q9D1G1    ), RAB1B_PIG   (Q06AU7    ), RAB1B_PONAB (Q5RE13    ), 
RAB1B_RAT   (P10536    ), RAB1C_ARATH (P92963    ), RAB1C_DICDI (O76173    ), 
RAB1C_HUMAN (Q92928    ), RAB1D_DICDI (Q54NU2    ), RAB1_DIPOM  (P22125    ), 
RAB1_THEAN  (Q4UB16    ), RAB1_THEPA  (Q9TVU5    ), RAB25_BOVIN (Q58DW6    ), 
RAB25_CANLF (E2RQ15    ), RAB25_HUMAN (P57735    ), RAB25_MOUSE (Q9WTL2    ), 
RAB25_RABIT (P46629    ), RAB26_BOVIN (Q29RR0    ), RAB26_HUMAN (Q9ULW5    ), 
RAB26_MOUSE (Q504M8    ), RAB26_RAT   (P51156    ), RAB2A_CANLF (P61105    ), 
RAB2A_CHICK (Q90965    ), RAB2A_DICDI (P36409    ), RAB2A_HUMAN (P61019    ), 
RAB2A_MACFA (Q4R4X6    ), RAB2A_MAIZE (P49103    ), RAB2A_MOUSE (P53994    ), 
RAB2A_PONAB (Q5R6B6    ), RAB2A_RABIT (Q01971    ), RAB2A_RAT   (P05712    ), 
RAB2B_HUMAN (Q8WUD1    ), RAB2B_MAIZE (P49104    ), RAB2B_MOUSE (P59279    ), 
RAB2_LYMST  (Q05975    ), RAB35_HUMAN (Q15286    ), RAB35_MOUSE (Q6PHN9    ), 
RAB35_RAT   (Q5U316    ), RAB37_HUMAN (Q96AX2    ), RAB37_MOUSE (Q9JKM7    ), 
RAB7A_BOVIN (Q3T0F5    ), RAB7A_CANLF (P18067    ), RAB7A_DICDI (P36411    ), 
RAB7A_HUMAN (P51149    ), RAB7A_MOUSE (P51150    ), RAB7A_PAROT (Q95UJ0    ), 
RAB7A_PONAB (Q5R9Y4    ), RAB7A_RABIT (O97572    ), RAB7A_RAT   (P09527    ), 
RAB7B_PAROT (Q6DUB4    ), RAB7_CENCI  (Q40787    ), RAB7_GOSHI  (Q9XER8    ), 
RAB7_MESCR  (P93267    ), RAB7_NEUCR  (Q9C2L8    ), RAB7_PEA    (P31022    ), 
RAB7_PRUAR  (O24461    ), RAB7_SOYBN  (Q43463    ), RAB7_VIGAC  (Q41640    ), 
RAB8A_BOVIN (A4FV54    ), RAB8A_CANLF (P61007    ), RAB8A_DICDI (P20790    ), 
RAB8A_HUMAN (P61006    ), RAB8A_MACFA (Q4R5P1    ), RAB8A_MOUSE (P55258    ), 
RAB8A_PONAB (Q5R4A3    ), RAB8A_RAT   (P35280    ), RAB8B_BOVIN (Q2HJI8    ), 
RAB8B_DICDI (P20791    ), RAB8B_HUMAN (Q92930    ), RAB8B_MOUSE (P61028    ), 
RAB8B_PONAB (Q5REC9    ), RAB8B_RAT   (P70550    ), RAB8_DIPOM  (P22128    ), 
RABA_DICDI  (P34141    ), RABC1_ARATH (O23657    ), RABC_DICDI  (P34143    ), 
RABF1_ARATH (Q9CB01    ), RABF1_DICDI (Q558I0    ), RABG1_ARATH (Q948K6    ), 
RABG2_ARATH (Q9SJ11    ), RABL3_BOVIN (Q32LJ6    ), RABL3_CHICK (Q5ZKR4    ), 
RABL3_DANRE (Q6TNS7    ), RABL3_HUMAN (Q5HYI8    ), RABL3_MOUSE (Q9D4V7    ), 
RABL3_XENLA (Q6GPS4    ), RABL3_XENTR (A4IHM6    ), RAD2A_ARATH (P28188    ), 
RAD2B_ARATH (Q9FPJ4    ), RAD2C_ARATH (Q9SEH3    ), RAE1A_ARATH (O24466    ), 
RAE1C_ARATH (P28186    ), RAE1D_ARATH (Q9LZD4    ), RAE1E_ARATH (Q9SF91    ), 
RAG3A_ARATH (Q948K8    ), RAG3B_ARATH (O04157    ), RAG3C_ARATH (Q9LW76    ), 
RAG3D_ARATH (Q9C820    ), RAG3E_ARATH (Q9XI98    ), RAG3F_ARATH (Q9LS94    ), 
RB11A_BOVIN (Q2TA29    ), RB11A_CAEEL (O01803    ), RB11A_CANLF (P62490    ), 
RB11A_CHICK (Q5ZJN2    ), RB11A_DICDI (P36412    ), RB11A_HUMAN (P62491    ), 
RB11A_MOUSE (P62492    ), RB11A_PIG   (Q52NJ1    ), RB11A_PONAB (Q5R9M7    ), 
RB11A_RABIT (P62493    ), RB11A_RAT   (P62494    ), RB11A_TOBAC (Q40523    ), 
RB11B_BOVIN (Q3MHP2    ), RB11B_DICDI (Q54KM9    ), RB11B_DIPOM (P22129    ), 
RB11B_HUMAN (Q15907    ), RB11B_MOUSE (P46638    ), RB11B_RAT   (O35509    ), 
RB11B_TOBAC (Q40521    ), RB11C_LOTJA (Q40193    ), RB11D_LOTJA (Q40194    ), 
RB11E_LOTJA (Q40195    ), RB18A_LYMST (Q05976    ), RB18B_DANRE (Q6DHC1    ), 
RB1BV_BETVU (Q39433    ), RB2BV_BETVU (Q39434    ), REM2_HUMAN  (Q8IYK8    ), 
REM2_MOUSE  (Q8VEL9    ), REM2_RAT    (Q9WTY2    ), RIC1_ORYSJ  (P40392    ), 
RIC2_ORYSJ  (P40393    ), RLGP2_ORYSJ (Q40723    ), ROC11_DICDI (Q6XHA5    ), 
ROCO4_DICDI (Q6XHB2    ), RSGA_STAAC  (Q9KX08    ), RSGA_STAAM  (P67681    ), 
RSGA_STAAN  (P67682    ), RSGA_STAAR  (Q6GHL4    ), RSGA_STAAS  (Q6G9Z2    ), 
RSGA_STAAW  (P67683    ), RSGA_STAEQ  (Q5HPX0    ), RSGA_STAES  (Q8CSV8    ), 
RSGA_STAHJ  (Q4L5S2    ), RYL1_YARLI  (P41924    ), SBCC_LACLA  (Q9CFZ0    ), 
SEC4_CANAL  (P0CY31    ), SEC4_CANAW  (C4YL11    ), SEC4_CANAX  (P0CY30    ), 
SEC4_CANGA  (O42819    ), SEC4_YEAST  (P07560    ), SPN1_SCHPO  (O36023    ), 
SUNT_BACSU  (P68579    ), SUNT_BPSPB  (P68580    ), V3_SPTNK    (B4YNE3    ), 
VIRBB_BRUA2 (Q2YJ82    ), VIRBB_BRUAB (P0C534    ), VIRBB_BRUME (Q8YDY9    ), 
VIRBB_BRUSU (Q8FXK7    ), Y5483_ARATH (Q9C5J9    ), Y6523_BACAN (Q6F054    ), 
Y7407_DICDI (Q54KD0    ), Y8923_DICDI (Q54FZ8    ), YPT1_NEUCR  (P33723    ), 
YPT1_PHYIN  (Q01890    ), YPT1_SCHPO  (P11620    ), YPT2_SCHPO  (P17609    ), 
YPT31_YEAST (P38555    ), YPT32_YEAST (P51996    ), YPT3_NICPL  (Q01111    ), 
YPT71_SCHPO (Q9HDY0    ), YPT7_SCHPO  (O94655    ), YPT7_YEAST  (P32939    ), 
YPTC1_CHLRE (Q39571    ), YPTC4_CHLRE (Q39570    ), YPTC5_CHLRE (Q39573    ), 
YPTC6_CHLRE (Q39572    ), YPTM2_MAIZE (Q05737    ), YPTV1_VOLCA (P31584    ), 
YPTV2_VOLCA (P36861    ), YPTV3_VOLCA (P36862    ), YPTV4_VOLCA (P36863    ), 
YPTV5_VOLCA (P36864    )
» more

PDB
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1 PDB

1OJL

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