Entry: PS00694

General information about the entry
Entry name ENT_VIR_OMP_1
Accession number PS00694
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-1992 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00582
Name and characterization of the entry
DescriptionEnterobacterial virulence outer membrane protein signature 1.
Pattern G-[LIVMFY]-N-[LIVM]-K-Y-R-Y-E.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 9 hits in 9 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 9 hits in 9 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 90.00 %
Comments
  • Taxonomic range: Bacteriophages, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AIL_YEREN   (P16454), AIL_YERPS   (Q56957), OMPX_ECO57  (P0A919), 
OMPX_ECOL6  (P0A918), OMPX_ECOLI  (P0A917), OMPX_ENTCL  (P25253), 
OMPX_SHIFL  (P0A920), PAGC_SALTY  (P23988), VLOM_LAMBD  (P03701)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LOMR_ECOLI  (P77184)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1ORM; 1Q9F; 1Q9G; 1QJ8; 1QJ9; 2M06; 2M07;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or