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Entry: PS00716

General information about the entry

Entry name [info] SIGMA70_2
Accession [info] PS00716
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED; 01-DEC-2004 DATA UPDATE; 27-SEP-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00592

Name and characterization of the entry

Description [info] Sigma-70 factors family signature 2.
Pattern [info]
[STN]-x(2)-[DENQ]-[LIVMT]-[GAS]-x(4)-[LIVMF]-[PSTG]-x(3)-[LIVMA]-x-[NQR]-
[LIVMA]-[EQH]-x(3)-[LIVMFWK]-x(2)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_09 which contains 555'594 sequence entries.


Total number of hits 143 in 143 different sequences
Number of true positive hits 143 in 143 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 14
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.08 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
143 sequences

FLIA_ECO57  (P0AEM8    ), FLIA_ECOL6  (P0AEM7    ), FLIA_ECOLI  (P0AEM6    ), 
FLIA_SALTI  (P0A2E9    ), FLIA_SALTY  (P0A2E8    ), FLIA_YEREN  (P52621    ), 
HRDA_STRCO  (P18182    ), HRDC_STRCO  (P18184    ), HRDD_STRCO  (P18249    ), 
HRDD_STRGR  (Q59914    ), HRDD_STRVF  (Q60012    ), LAFS_VIBPA  (Q03474    ), 
RP28_BACAN  (P62182    ), RP28_BACCR  (P62180    ), RP28_BACTK  (P62181    ), 
RP35_BACAN  (P62177    ), RP35_BACCR  (P62178    ), RP35_BACTK  (P62179    ), 
RPOD_AGRFC  (P33452    ), RPOD_BORBU  (P52323    ), RPOD_BUCAI  (P57163    ), 
RPOD_BUCAP  (P32001    ), RPOD_BUCBP  (Q89B10    ), RPOD_CAUCR  (P52324    ), 
RPOD_COXBU  (Q83BB6    ), RPOD_ECOLI  (P00579    ), RPOD_HAEIN  (P43766    ), 
RPOD_HELPJ  (Q9ZMY3    ), RPOD_HELPY  (P55993    ), RPOD_LEPIC  (P61540    ), 
RPOD_LEPIN  (P59117    ), RPOD_MYXXA  (P17531    ), RPOD_NEIGO  (P52325    ), 
RPOD_PSEAE  (P26480    ), RPOD_PSEPH  (P52326    ), RPOD_PSEPU  (P52327    ), 
RPOD_RHIEC  (Q2K619    ), RPOD_RHIME  (Q59753    ), RPOD_RHOCA  (P0CZ15    ), 
RPOD_RHOCB  (D5AQI9    ), RPOD_RICBR  (Q1RKH7    ), RPOD_RICCN  (Q92FZ8    ), 
RPOD_RICFE  (Q4UJT1    ), RPOD_RICPR  (P33451    ), RPOD_RICTY  (Q68VQ5    ), 
RPOD_SALTI  (P0A2E4    ), RPOD_SALTY  (P0A2E3    ), RPOD_SERMA  (P43344    ), 
RPOD_SHEVD  (O24744    ), RPOD_TREPA  (O83506    ), RPOD_XANAC  (Q8PG33    ), 
RPOD_XANCP  (Q8P4H2    ), RPOD_XYLFA  (Q9PDM9    ), RPOD_XYLFT  (Q87DT7    ), 
RPOH_BUCAI  (O05385    ), RPOH_BUCBP  (Q89B27    ), RPOH_CAUCN  (B8H3C3    ), 
RPOH_CAUCR  (P0CAW9    ), RPOH_CITFR  (P11539    ), RPOH_ECO57  (P0AGB5    ), 
RPOH_ECOL6  (P0AGB4    ), RPOH_ECOLI  (P0AGB3    ), RPOH_ENTCL  (P50508    ), 
RPOH_HAEIN  (P44404    ), RPOH_PROMI  (P50509    ), RPOH_PSEAE  (P42378    ), 
RPOH_RHIRD  (P50507    ), RPOH_SERMA  (P50510    ), RPOH_VIBCH  (P50511    ), 
RPOH_VIBVU  (Q8DD54    ), RPOH_ZYMMO  (P50512    ), RPOS_ECOLI  (P13445    ), 
RPOS_PSEAE  (P45684    ), RPOS_SALDU  (P0A2E7    ), RPOS_SALT1  (D0ZVL4    ), 
RPOS_SALTI  (P0A2E6    ), RPOS_SALTU  (F5ZTT9    ), RPOS_SALTY  (P0DM81    ), 
RPOS_SHIFL  (P35540    ), RPOS_VIBCH  (O51804    ), RPOS_YEREN  (P47765    ), 
RPSB_BACSU  (P06574    ), RPSB_CORDI  (P33118    ), RPSB_MYXXA  (P19433    ), 
RPSB_NOSS1  (Q03065    ), RPSB_STIAD  (Q01624    ), RPSC_MYXXA  (Q07083    ), 
RPSC_NOSS1  (Q03066    ), RPSC_SYNY3  (Q59996    ), RPSD_BACSU  (P10726    ), 
RPSE_BACSU  (P06222    ), RPSE_CLOAB  (P33657    ), RPSF_BACLI  (P26764    ), 
RPSF_BACME  (P35145    ), RPSF_BACSU  (P07860    ), RPSG_BACSU  (P19940    ), 
RPSG_CLOAB  (P33658    ), RPSK_BACSU  (P12254    ), RPSW_STRCO  (P17211    ), 
SIGA1_SYNE7 (P38023    ), SIGA4_SYNE7 (Q31QR8    ), SIGA_BACHD  (O66381    ), 
SIGA_BACSP  (P52328    ), SIGA_BACSU  (P06224    ), SIGA_CHLMU  (P56835    ), 
SIGA_CHLPN  (Q9Z7F0    ), SIGA_CHLTR  (P18333    ), SIGA_CLOAB  (P33656    ), 
SIGA_ENTFA  (P52329    ), SIGA_LACLA  (Q04506    ), SIGA_LACLC  (P58290    ), 
SIGA_LISIN  (Q92BQ6    ), SIGA_LISMO  (P52331    ), SIGA_MICAE  (P52322    ), 
SIGA_MYCBO  (P0A603    ), SIGA_MYCGE  (P47491    ), SIGA_MYCPN  (P78022    ), 
SIGA_MYCTO  (P9WGI0    ), SIGA_MYCTU  (P9WGI1    ), SIGA_NOSS1  (P26683    ), 
SIGA_STAA8  (P0A0J0    ), SIGA_STAAC  (Q5HFJ9    ), SIGA_STAAM  (P0A0I8    ), 
SIGA_STAAN  (Q99TT5    ), SIGA_STAAR  (Q6GGD8    ), SIGA_STAAS  (Q6G905    ), 
SIGA_STAAW  (P0A0I9    ), SIGA_STAEQ  (Q5HNY7    ), SIGA_STAES  (Q8CP24    ), 
SIGA_STRAU  (P27785    ), SIGA_STRCO  (P18183    ), SIGA_STRGR  (P77951    ), 
SIGA_STRMU  (O33662    ), SIGA_STRPN  (P0A4I9    ), SIGA_STRR6  (P0A4J0    ), 
SIGA_SYNY3  (P74565    ), SIGA_THEAQ  (Q9EZJ8    ), SIGA_THEMA  (P77994    ), 
SIGA_THET2  (Q72L95    ), SIGB_ARATH  (O22056    ), SIGB_MYCTO  (P9WGI4    ), 
SIGB_MYCTU  (P9WGI5    ), SIGF_ARATH  (Q9LD95    )
» more

UniProtKB/Swiss-Prot
False negative sequences
14 sequences

FLIA_PSEAE  (P29248    ), RPOF_STRAU  (P37970    ), RPOF_STRCO  (P37971    ), 
RPOH_BUCAP  (Q8KA76    ), RPOS_COXBU  (Q9KI19    ), RPSB_BACAN  (Q9K5J6    ), 
RPSH_BACLI  (P02964    ), RPSH_BACSU  (P17869    ), RPSX_BACTK  (P26768    ), 
SIGA2_SYNE7 (Q31ME3    ), SIGA3_SYNE7 (Q31QG5    ), SIGI_BACAN  (P0DO98    ), 
SIGI_BACSU  (O31654    ), SIGO_BACSU  (O34843    )
» more

PDB
[Detailed view]
47 PDB

1KU3; 1KU7; 1L9U; 1L9Z; 1RIO; 1TLH; 1TTY; 2P7V; 3IYD; 3N97; 3T72; 4G6D; 4G8X; 4G94; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 4MEX; 4MEY; 4XLN; 4XLP; 4XLQ; 4XLR; 4XLS; 4XSX; 4XSY; 4XSZ; 4YFK; 4YFN; 4YFX; 4YG2; 4YLN; 4YLO; 4YLP; 4ZH2; 4ZH3; 4ZH4; 5IPL; 5IPM; 5IPN
» more

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