Entry: PS00717

Forthcoming changes to the profile format
General information about the entry

Entry name [info] SIGMA54_1
Accession [info] PS00717
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); JUL-1999 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00593

Name and characterization of the entry

Description [info] Sigma-54 factors family signature 1.
Pattern [info]
P-[LIVM]-x-[LIVM]-x(2)-[LIVM]-A-x(2)-[LIVMFT]-x(2)-[HS]-x-S-T-[LIVM]-S-R.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 29 in 29 different sequences
Number of true positive hits 29 in 29 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
29 sequences

RP54_ACIFR  (P24695), RP54_ACIGI  (P33983), RP54_AZOC5  (P33984), 
RP54_AZOVI  (P08623), RP54_BACSU  (P24219), RP54_BRADU  (P30332), 
RP54_CAUCR  (Q03408), RP54_CLOK5  (P38944), RP54_CUPNH  (P28615), 
RP54_ECOLI  (P24255), RP54_HELPJ  (Q9ZLC8), RP54_HELPY  (P56143), 
RP54_KLEOX  (P06223), RP54_PSEAE  (P49988), RP54_PSEPK  (P0A171), 
RP54_PSEPU  (P0A172), RP54_RHIET  (P49989), RP54_RHIME  (P17263), 
RP54_RHIML  (P33985), RP54_RHISN  (P22881), RP54_RHOCA  (P0CY59), 
RP54_RHOCB  (D5ANH9), RP54_RHOSH  (Q01194), RP54_SALTY  (P26979), 
RP54_SHEVD  (Q9S0L2), RP54_TREPA  (O83149), RP54_VIBAN  (O08429), 
RP54_XANEU  (P77998), RP55_BRADU  (P30333)
» More


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission