Entry: PS00719

General information about the entry
Entry name GLYCOSYL_HYDROL_F2_1
Accession number PS00719
Entry type PATTERN
Date DEC-1992 (CREATED); JUL-1999 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00531
Name and characterization of the entry
DescriptionGlycosyl hydrolases family 2 signature 1.
Pattern N-x-[LIVMFYWD]-R-[STACN](2)-H-Y-P-x(4)-[LIVMFYWS](2)-x(3)-[DN]-x(2)- G-[LIVMFYW](4).
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 75 hits in 75 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 75 hits in 75 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 26
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 74.26 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BGA2_ECOLI  (P06864), BGAL1_ENTCL (Q47077), BGAL1_KLEP7 (A6T8X0), 
BGAL1_KLEPN (P06219), BGAL2_ENTCL (Q2XQU3), BGAL2_KLEP7 (A6TI29), 
BGAL2_KLEPN (A7KGA5), BGAL_ACTPL  (P70753), BGAL_AERHH  (A0KQH4), 
BGAL_ALTMD  (B4S2K9), BGAL_ARTSB  (Q59140), BGAL_BACHD  (Q9K9C6), 
BGAL_BACMD  (O52847), BGAL_CITK8  (A8AKB8), BGAL_CLOAT  (P24131), 
BGAL_ECO24  (A7ZI91), BGAL_ECO27  (B7UJI9), BGAL_ECO57  (Q8X685), 
BGAL_ECO5E  (B5Z2P7), BGAL_ECOHS  (A7ZWZ1), BGAL_ECOK1  (A1A831), 
BGAL_ECOL5  (Q0TKT1), BGAL_ECOL6  (Q8FKG6), BGAL_ECOLC  (B1J0T5), 
BGAL_ECOLI  (P00722), BGAL_ECOLU  (B7N8Q1), BGAL_ECOLX  (Q8VNN2), 
BGAL_ECOSM  (B1LIM9), BGAL_ECOUT  (Q1RFJ2), BGAL_ENT38  (A4W7D2), 
BGAL_ENTAG  (A3FEW8), BGAL_ERWCT  (Q6D736), BGAL_ERWT9  (B2VHN8), 
BGAL_KLEP3  (B5XQY2), BGAL_KLULA  (P00723), BGAL_LACAC  (O07684), 
BGAL_LACDA  (Q1G9Z4), BGAL_LACDE  (P0C1Y0), BGAL_LACHE  (Q7WTB4), 
BGAL_LACLA  (Q48727), BGAL_LACSK  (Q48846), BGAL_LEULA  (Q02603), 
BGAL_OENOB  (Q04F24), BGAL_PSEHA  (P81650), BGAL_PSYIN  (A1SWB8), 
BGAL_RHIML  (Q59750), BGAL_SALAR  (A9MQ82), BGAL_SERP5  (A8GGN3), 
BGAL_SHIDS  (Q32JB6), BGAL_SHISS  (Q3Z583), BGAL_STAXY  (O33815), 
BGAL_STRTR  (P23989), BGAL_THEMA  (Q56307), BGAL_THEP3  (P77989), 
BGAL_THETU  (P26257), BGAL_VIBC3  (A5F5U6), BGAL_YERE8  (A1JTC4), 
BGAL_YERP3  (A7FH78), BGAL_YERPA  (Q1C6T8), BGAL_YERPB  (B2K6E6), 
BGAL_YERPE  (Q7CIZ3), BGAL_YERPG  (A9R0J8), BGAL_YERPN  (Q1CI76), 
BGAL_YERPP  (A4TLL5), BGAL_YERPS  (Q669R9), BGAL_YERPY  (B1JI86), 
BGLR_CANFA  (O18835), BGLR_CHLAE  (O77695), BGLR_ECOLI  (P05804), 
BGLR_FELCA  (O97524), BGLR_HUMAN  (P08236), BGLR_MOUSE  (P12265), 
BGLR_PIG    (Q4FAT7), BGLR_PONAB  (Q5R5N6), BGLR_RAT    (P06760)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BGAL_CROS8  (A7MN76), BGAL_LEUMM  (Q03WL0), BGAL_PHOPR  (Q6LL68), 
BGAL_VIBVU  (Q8D4H3), BGAL_VIBVY  (Q7MG04), EBM_ARATH   (Q75W54), 
EBM_LILLO   (Q5H7P5), MANBA_ASPAC (O74168), MANBA_ASPCL (A1CTM5), 
MANBA_ASPFC (B0Y7S2), MANBA_ASPFN (B8NP78), MANBA_ASPFU (Q4WMS9), 
MANBA_ASPNC (A2QWU9), MANBA_ASPOR (Q2UN00), MANBA_ASPTN (Q0CI48), 
MANBA_EMENI (Q5BCI8), MANBA_NEOFI (A1DMT2), MANBB_ASPCL (A1CGA8), 
MANBB_ASPFC (B0YBU9), MANBB_ASPFN (B8NW36), MANBB_ASPFU (Q4WAH4), 
MANBB_ASPNC (A2QYN2), MANBB_ASPOR (Q2TXB7), MANBB_ASPTN (Q0CCA0), 
MANBB_EMENI (Q5B7W2), MANBB_NEOFI (A1D911)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
BGAL_RHIRD  (P30812)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1BGL; 1BGM; 1BHG; 1DP0; 1F49; 1F4A; 1F4H; 1GHO; 1HN1; 1JYN; 1JYV; 1JYW; 1JYX; 1JYY; 1JYZ; 1JZ0; 1JZ1; 1JZ2; 1JZ3; 1JZ4; 1JZ5; 1JZ6; 1JZ7; 1JZ8; 1PX3; 1PX4; 3CZJ; 3DYM; 3DYO; 3DYP; 3E1F; 3HN3; 3I3B; 3I3D; 3I3E; 3IAP; 3IAQ; 3K46; 3K4D; 3MUY; 3MUZ; 3MV0; 3MV1; 3OB8; 3OBA; 3SEP; 3T08; 3T09; 3T0A; 3T0B; 3T0D; 3T2O; 3T2P; 3T2Q; 3VD3; 3VD4; 3VD5; 3VD7; 3VD9; 3VDA; 3VDB; 3VDC; 4DUV; 4DUW; 4DUX;

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