Entry: PS00726

General information about the entry
Entry name AP_NUCLEASE_F1_1
Accession number PS00726
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00598
Name and characterization of the entry
DescriptionAP endonucleases family 1 signature 1.
Pattern [APF]-D-[LIVMF](2)-{T}-[LIVM]-Q-E-{G}-K.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 23 hits in 23 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 23 hits in 23 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 95.83 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 7,metal(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
APEA_DICDI  (P51173), APEX1_BOVIN (P23196), APEX1_DANRE (A0MTA1), 
APEX1_GORGO (A1YES6), APEX1_HUMAN (P27695), APEX1_MOUSE (P28352), 
APEX1_PANPA (A1YFZ3), APEX1_PANTR (A2T6Y4), APEX1_PONPY (A2T7I6), 
APEX1_RAT   (P43138), APEX2_BOVIN (Q5E9N9), APEX2_HUMAN (Q9UBZ4), 
APEX2_MOUSE (Q68G58), APN2_SCHPO  (P87175), ARP_ARATH   (P45951), 
EX3_ECOLI   (P09030), EX3_HAEIN   (P44318), EX3_SALTI   (P0A1B0), 
EX3_SALTY   (P0A1A9), EXOA_BACSU  (P37454), EXOA_STRPN  (P0A2X3), 
EXOA_STRR6  (P0A2X4), RRP1_DROME  (P27864)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
APN2_YEAST  (P38207)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AKO; 1BIX; 1DE8; 1DE9; 1DEW; 1E9N; 1HD7; 1LYR; 1XZR; 1XZS; 1XZT; 2ISI; 2O3C; 2O3H; 3U8U; 4IEM;

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