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Entry: PS00727

General information about the entry

Entry name [info] AP_NUCLEASE_F1_2
Accession [info] PS00727
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED; 01-DEC-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00598

Name and characterization of the entry

Description [info] AP endonucleases family 1 signature 2.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.

Total number of hits 19 in 19 different sequences
Number of true positive hits 19 in 19 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.08 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
19 sequences

APEA_DICDI  (P51173    ), APEX1_BOVIN (P23196    ), APEX1_GORGO (A1YES6    ), 
APEX1_HUMAN (P27695    ), APEX1_MOUSE (P28352    ), APEX1_PANPA (A1YFZ3    ), 
APEX1_PANTR (A2T6Y4    ), APEX1_PONPY (A2T7I6    ), APEX1_RAT   (P43138    ), 
APN2_SCHPO  (P87175    ), ARP_ARATH   (P45951    ), EX3_ECOLI   (P09030    ), 
EX3_HAEIN   (P44318    ), EX3_SALTI   (P0A1B0    ), EX3_SALTY   (P0A1A9    ), 
EXOA_BACSU  (P37454    ), EXOA_STRPN  (P0A2X3    ), EXOA_STRR6  (P0A2X4    ), 
RRP1_DROME  (P27864    )
» more

False negative sequences
7 sequences

APE1L_ARATH (Q5XF07    ), APE2_ARATH  (F4JNY0    ), APEX1_DANRE (A0MTA1    ), 
APEX2_BOVIN (Q5E9N9    ), APEX2_HUMAN (Q9UBZ4    ), APEX2_MOUSE (Q68G58    ), 
APN2_YEAST  (P38207    )
» more

[Detailed view]
22 PDB

1AKO; 1BIX; 1DE8; 1DE9; 1DEW; 1E9N; 1HD7; 2ISI; 2O3H; 3U8U; 4IEM; 4LND; 4QH9; 4QHD; 4QHE; 5CFE; 5CFG; 5DFF; 5DFH; 5DFI; 5DFJ; 5DG0
» more

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