Entry: PS00780

General information about the entry
Entry name GLYCO_HORMONE_ALPHA_2
Accession number PS00780
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-1992 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00623
Name and characterization of the entry
DescriptionGlycoprotein hormones alpha chain signature 2.
Pattern N-H-T-x-C-x-C-x-T-C-x(2)-H-K.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 54 hits in 54 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 54 hits in 54 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.74 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 5,disulfide
  • `Interesting' site in the pattern: 7,disulfide
  • `Interesting' site in the pattern: 10,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
GLHA1_CYPCA (P01221), GLHA1_ONCKE (P13152), GLHA2_CYPCA (P18857), 
GLHA2_ONCKE (P69063), GLHA2_ONCTS (P69062), GLHA_ACALA  (P30970), 
GLHA_AILFU  (Q8HZS0), GLHA_AILME  (Q8WN20), GLHA_ANGAN  (P27794), 
GLHA_AOTNA  (Q3HRV5), GLHA_BALAC  (P37036), GLHA_BOSMU  (Q19PY8), 
GLHA_BOVIN  (P01217), GLHA_BUBBU  (Q9GL36), GLHA_CALJA  (P51499), 
GLHA_CANFA  (Q9XSW8), GLHA_CAPHI  (Q8WMW8), GLHA_CAVPO  (Q9JK68), 
GLHA_CERNI  (Q8WMR3), GLHA_CLAGA  (P53542), GLHA_COTJA  (P68242), 
GLHA_CTEID  (P30983), GLHA_EQUAS  (Q28365), GLHA_EQUBU  (O46642), 
GLHA_FELCA  (Q52R91), GLHA_FUNHE  (P47744), GLHA_HORSE  (P01220), 
GLHA_HUMAN  (P01215), GLHA_HYPMO  (P37037), GLHA_ICTPU  (Q9YGP3), 
GLHA_LITCT  (P80051), GLHA_MACFA  (Q9BEH3), GLHA_MACMU  (P22762), 
GLHA_MACRU  (P68267), GLHA_MASCO  (Q9ERG4), GLHA_MELGA  (P68241), 
GLHA_MERUN  (Q9ERJ6), GLHA_MESAU  (Q9ERG5), GLHA_MICMO  (Q9ERG3), 
GLHA_MONDO  (Q6YNX4), GLHA_MORSA  (Q91119), GLHA_MOUSE  (P01216), 
GLHA_MURCI  (P12836), GLHA_NIPNI  (Q8JIE9), GLHA_PANTA  (Q9BDI8), 
GLHA_PHYMC  (P25329), GLHA_PIG    (P01219), GLHA_RABIT  (P07474), 
GLHA_RAT    (P11962), GLHA_SAIBB  (Q3YC03), GLHA_SHEEP  (P01218), 
GLHA_STRCA  (P80665), GLHA_THUOB  (P37204), GLHA_TRIVU  (P68268)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
GPHA2_HUMAN (Q96T91), GPHA2_MOUSE (Q925Q5), GPHA2_RAT   (Q925Q4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1DZ7; 1E9J; 1FL7; 1HD4; 1QFW; 1XWD; 4AY9;

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