Entry: PS00782

General information about the entry

Entry name [info] TFIIB
Accession [info] PS00782
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); APR-2006 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00624

Name and characterization of the entry

Description [info] Transcription factor TFIIB repeat signature.
Pattern [info]
G-[KR]-x(3)-[STAGN]-{S}-[LIVMYA]-[GSTA](2)-[CSAV]-[LIVM]-[LIVMFY]-
[LIVMA]-[GSA]-[STAC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 128 in 73 different sequences
Number of true positive hits 125 in 70 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 15
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.66 %
Recall (true positives / (true positives + false negatives)) 89.29 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 2
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
70 sequences

TF2B1_ARATH (P48512    ), TF2B1_SULSO (P58111    ), TF2B1_THEAC (Q9HJM7    ), 
TF2B1_THEKO (Q5JGN1    ), TF2B1_THEVO (Q979Q3    ), TF2B2_ARATH (Q9SS44    ), 
TF2B2_HALSA (Q9HRE6    ), TF2B2_HALVD (Q9YGA5    ), TF2B2_THEAC (Q9HJM2    ), 
TF2B2_THEKO (P58109    ), TF2B2_THEVO (Q979P7    ), TF2B3_HALSA (Q9HHK5    ), 
TF2B4_HALSA (Q9HR45    ), TF2B6_HALSA (Q9HSB3    ), TF2B7_HALSA (Q9HSF7    ), 
TF2B_AERPE  (Q9Y942    ), TF2B_ARCFU  (O28970    ), TF2B_BOVIN  (Q2KIN8    ), 
TF2B_CAEEL  (O16991    ), TF2B_CALMQ  (A8MCX6    ), TF2B_DICDI  (Q54FD6    ), 
TF2B_DROME  (P29052    ), TF2B_DROVI  (Q9NHP7    ), TF2B_ENCCU  (Q8SRP3    ), 
TF2B_HALVA  (P42198    ), TF2B_HUMAN  (Q00403    ), TF2B_IGNH4  (A8AC96    ), 
TF2B_KLULA  (Q05959    ), TF2B_MACFA  (Q4R3J5    ), TF2B_META3  (A6UW60    ), 
TF2B_METAC  (Q8TT29    ), TF2B_METB6  (A7IAR4    ), TF2B_METJA  (Q58192    ), 
TF2B_METKA  (Q8TX21    ), TF2B_METM5  (A4G0F2    ), TF2B_METM6  (A9A8Q0    ), 
TF2B_METM7  (A6VI28    ), TF2B_METMA  (P0CW15    ), TF2B_METMJ  (A3CSQ6    ), 
TF2B_METMP  (Q6M176    ), TF2B_METMZ  (P0CW14    ), TF2B_METPE  (B8GJQ9    ), 
TF2B_METS3  (A5UKA1    ), TF2B_METST  (Q2NEL6    ), TF2B_METTH  (O26971    ), 
TF2B_METTL  (Q9P9I7    ), TF2B_METTP  (A0B5T8    ), TF2B_MOUSE  (P62915    ), 
TF2B_ORYSJ  (Q8W0W3    ), TF2B_PONAB  (Q5R886    ), TF2B_PYRAB  (Q9V0V5    ), 
TF2B_PYRAE  (Q8ZWS3    ), TF2B_PYRAR  (A4WMA6    ), TF2B_PYRFU  (P61998    ), 
TF2B_PYRHO  (O59151    ), TF2B_PYRIL  (A1RV37    ), TF2B_PYRNV  (B1YCX0    ), 
TF2B_PYROC  (Q977X4    ), TF2B_PYRWO  (P61999    ), TF2B_RAT    (P62916    ), 
TF2B_SCHPO  (O13749    ), TF2B_SOYBN  (P48513    ), TF2B_SULAC  (Q9UWN6    ), 
TF2B_SULSH  (P50387    ), TF2B_SULTO  (Q975S1    ), TF2B_XENLA  (P29054    ), 
TF2B_YEAST  (P29055    ), TF3B_CANAL  (P43072    ), TF3B_KLULA  (P46070    ), 
TF3B_YEAST  (P29056    )
» more

UniProtKB/Swiss-Prot
False negative sequences
15 sequences

BRF2_BOVIN  (Q29S07    ), BRF2_DANRE  (A8KBY2    ), BRF2_HUMAN  (Q9HAW0    ), 
BRF2_MACFA  (Q4R318    ), BRF2_MOUSE  (Q3UAW9    ), BRF2_RAT    (Q4V8D6    ), 
BRF2_XENLA  (Q66IW8    ), BRF2_XENTR  (A4QNR3    ), TF2B1_HALSA (Q9HNA2    ), 
TF2B2_SULSO (P58110    ), TF2B5_HALSA (Q9HHH8    ), TF2B_MIMIV  (Q5UPT1    ), 
TF3B_HUMAN  (Q92994    ), TF3B_MOUSE  (Q8CFK2    ), TF3B_SCHPO  (Q9P6R0    )
» more

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

GPI11_YARLI (Q6C741    ), HXK6_ORYSJ  (Q8LQ68    ), KCRS_CHICK  (P11009    )

		
PDB
[Detailed view]
22 PDB

1AIS; 1C9B; 1D3U; 1TFB; 1VOL; 2PHG; 3K7A; 4BBR; 4BBS; 4V1N; 4V1O; 5FMF; 5FYW; 5FZ5; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD
» more

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