Entry: PS00804

General information about the entry
Entry name CALRETICULIN_2
Accession number PS00804
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-1992 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00636
Name and characterization of the entry
DescriptionCalreticulin family signature 2.
Pattern [LIVM](2)-F-G-P-D-x-C-[AG].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 49 hits in 49 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 49 hits in 49 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 4
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 96.08 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CALR1_ARATH (O04151), CALR2_ARATH (Q38858), CALR3_ARATH (O04153), 
CALR3_BOVIN (Q2TBR8), CALR3_HUMAN (Q96L12), CALR3_MOUSE (Q9D9Q6), 
CALR_BERST  (Q9ZPP1), CALR_BETVU  (O81919), CALR_BOMMO  (Q7Z1E6), 
CALR_BOVIN  (P52193), CALR_CAEBR  (Q61KR9), CALR_CAEEL  (P27798), 
CALR_CHLAE  (Q4VIT5), CALR_CHLRE  (Q9STD3), CALR_CRIGR  (Q8K3H7), 
CALR_DICDI  (Q23858), CALR_DROME  (P29413), CALR_EUGGR  (Q9ZNY3), 
CALR_HUMAN  (P27797), CALR_MACFA  (Q4R6K8), CALR_MACFU  (Q2HWU3), 
CALR_MOUSE  (P14211), CALR_NICPL  (Q40401), CALR_ONCVO  (P11012), 
CALR_ORYSJ  (Q9SLY8), CALR_PIG    (P28491), CALR_PRUAR  (Q9XF98), 
CALR_RABIT  (P15253), CALR_RAT    (P18418), CALR_RICCO  (P93508), 
CALR_SCHMA  (Q06814), CALX1_ARATH (P29402), CALX2_ARATH (Q38798), 
CALX_ASPFU  (Q6Q487), CALX_CAEBR  (A8XA40), CALX_CAEEL  (P34652), 
CALX_CANFA  (P24643), CALX_HELTU  (Q39994), CALX_HUMAN  (P27824), 
CALX_MOUSE  (P35564), CALX_PEA    (O82709), CALX_PONAB  (Q5R440), 
CALX_RAT    (P35565), CALX_SCHPO  (P36581), CALX_SOYBN  (Q39817), 
CALX_YEAST  (P27825), CLGN_BOVIN  (Q3SYT6), CLGN_HUMAN  (O14967), 
CLGN_MOUSE  (P52194)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CALR_MAIZE  (Q9SP22), YOFJ_SCHPO  (Q9P7D0)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CALR_CANFA  (P28490), CALR_ENTHI  (P83003), CALR_RANES  (P31832), 
CALR_SPIOL  (P30806)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1JHN; 3O0V; 3POS; 3POW; 3RG0;

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