Entry: PS00805

General information about the entry
Entry name CALRETICULIN_REPEAT
Accession number PS00805
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00636
Name and characterization of the entry
DescriptionCalreticulin family repeated motif signature.
Pattern [IVM]-x-[DV]-x-[DENST]-x(2)-K-P-[DEH]-D-W-[DEN].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 109 hits in 46 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 109 hits in 46 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 4
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 99.09 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 3
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CALR1_ARATH (O04151), CALR2_ARATH (Q38858), CALR3_ARATH (O04153), 
CALR_BERST  (Q9ZPP1), CALR_BETVU  (O81919), CALR_BOMMO  (Q7Z1E6), 
CALR_BOVIN  (P52193), CALR_CAEBR  (Q61KR9), CALR_CAEEL  (P27798), 
CALR_CHLAE  (Q4VIT5), CALR_CHLRE  (Q9STD3), CALR_CRIGR  (Q8K3H7), 
CALR_DICDI  (Q23858), CALR_DROME  (P29413), CALR_EUGGR  (Q9ZNY3), 
CALR_HUMAN  (P27797), CALR_MACFA  (Q4R6K8), CALR_MACFU  (Q2HWU3), 
CALR_MAIZE  (Q9SP22), CALR_MOUSE  (P14211), CALR_NICPL  (Q40401), 
CALR_ONCVO  (P11012), CALR_ORYSJ  (Q9SLY8), CALR_PIG    (P28491), 
CALR_PRUAR  (Q9XF98), CALR_RABIT  (P15253), CALR_RAT    (P18418), 
CALR_RICCO  (P93508), CALR_SCHMA  (Q06814), CALX1_ARATH (P29402), 
CALX2_ARATH (Q38798), CALX_ASPFU  (Q6Q487), CALX_CAEBR  (A8XA40), 
CALX_CAEEL  (P34652), CALX_CANFA  (P24643), CALX_HELTU  (Q39994), 
CALX_HUMAN  (P27824), CALX_MOUSE  (P35564), CALX_PEA    (O82709), 
CALX_PONAB  (Q5R440), CALX_RAT    (P35565), CALX_SCHPO  (P36581), 
CALX_SOYBN  (Q39817), CALX_YEAST  (P27825), CLGN_BOVIN  (Q3SYT6), 
CLGN_HUMAN  (O14967)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CLGN_MOUSE  (P52194)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CALR_CANFA  (P28490), CALR_ENTHI  (P83003), CALR_RANES  (P31832), 
CALR_SPIOL  (P30806)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1HHN; 1JHN; 1K91; 1K9C; 3RG0;

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