Entry: PS00819

General information about the entry
Entry name DPS_2
Accession number PS00819
Entry type PATTERN
Date OCT-1993 (CREATED); JUL-1998 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00645
Name and characterization of the entry
DescriptionDps protein family signature 2.
Pattern [LIVMFY]-[DH]-x-[LIVM]-[GA]-E-R-x(3)-[LIF]-[GDN]-x(2)-[PA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 74 hits in 74 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 73 hits in 73 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 26
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 98.65 %
  • Recall (true hits / (true hits + false negatives)): 73.74 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DPS2_BACAN  (Q8RPQ2), DPSA_NOSS1  (Q8YQL3), DPSA_SYNP6  (Q9R6T3), 
DPS_ACIAD   (Q6FCX7), DPS_BREBE   (P83695), DPS_CITFR   (Q84AP1), 
DPS_CITK8   (A8AIW9), DPS_CROS8   (A7MEY6), DPS_ECO24   (A7ZJM7), 
DPS_ECO27   (B7UM08), DPS_ECO45   (B7MGS0), DPS_ECO55   (B7LC95), 
DPS_ECO57   (P0ABT3), DPS_ECO5E   (B5YSA4), DPS_ECO7I   (B7NNP4), 
DPS_ECO81   (B7MQR6), DPS_ECO8A   (B7M787), DPS_ECOBW   (C4ZXY4), 
DPS_ECODH   (B1X7E2), DPS_ECOHS   (A7ZY70), DPS_ECOL5   (Q0TJN6), 
DPS_ECOL6   (Q8FJM0), DPS_ECOLC   (B1IXF6), DPS_ECOLI   (P0ABT2), 
DPS_ECOLU   (B7NAB2), DPS_ECOSE   (B6I7W9), DPS_ECOSM   (B1LMA4), 
DPS_ECOUT   (Q1REB2), DPS_ENT38   (A4W8F0), DPS_ENTCL   (Q84FI1), 
DPS_ESCF3   (B7LMB6), DPS_HELPJ   (Q9ZMJ1), DPS_HELPY   (P43313), 
DPS_KLEP3   (B5XYT2), DPS_KLEP7   (A6T6Q6), DPS_KLEPN   (Q84FI0), 
DPS_KLUCI   (Q6XZR0), DPS_LISIN   (P80725), DPS_LISMO   (Q8Y8G1), 
DPS_PORG3   (B2RMG0), DPS_PORGI   (P0C935), DPS_PROHU   (Q6Y1R6), 
DPS_SALA4   (B5F0B0), DPS_SALAR   (A9MIS0), DPS_SALCH   (Q57RC9), 
DPS_SALDC   (B5FP96), DPS_SALEP   (B5QXT6), DPS_SALG2   (B5R797), 
DPS_SALHS   (B4TC86), DPS_SALNS   (B4T089), DPS_SALPA   (Q5PG12), 
DPS_SALPB   (A9MST4), DPS_SALPC   (C0PX17), DPS_SALPK   (B5BBZ6), 
DPS_SALSV   (B4TQX5), DPS_SALTI   (Q8XF78), DPS_SALTY   (Q7CQV9), 
DPS_SHIB3   (B2TVB6), DPS_SHIBS   (Q323Y1), DPS_SHIDS   (Q32I91), 
DPS_SHIFL   (P0ABT4), DPS_SHISS   (Q3Z3X3), DPS_SYNE7   (Q55024), 
FTPA_HAEDU  (Q47953), G20U_BACSU  (P80879), MRGA_BACSU  (P37960), 
TPF1_TREPA  (P16665), TYF1_TREPE  (P17915), Y1349_HAEIN (P45173), 
Y1894_SYNY3 (P73321), Y458_ANAVA  (P0A3A8), Y458_NOSS1  (P0A3A7), 
YBP2_STRAU  (P29714)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
DPS1_BACAN  (Q8RPQ1), DPS1_DEIRA  (Q9RS64), DPS2_DEIRA  (Q9RZN1), 
DPS_AGRT5   (Q8UCK6), DPS_ERWCT   (Q6D3H7), DPS_ERWT9   (B2VBZ3), 
DPS_HALSA   (Q9HMP7), DPS_MYCS2   (A0R692), DPS_MYCSM   (P0C558), 
DPS_PECCP   (C6DEE2), DPS_SERMA   (Q84AP0), DPS_SERP5   (A8GBU5), 
DPS_SODGM   (Q2NUI3), DPS_STRMG   (Q9KWH3), DPS_STRSE   (C5VZF1), 
DPS_STRSU   (P0CB53), DPS_YERE8   (A1JU34), DPS_YERP3   (A7FGU7), 
DPS_YERPA   (Q1C6F4), DPS_YERPB   (B2K7Y0), DPS_YERPE   (Q7CJ65), 
DPS_YERPG   (A9R6H6), DPS_YERPN   (Q1CHU6), DPS_YERPP   (A4TLZ3), 
DPS_YERPS   (Q669E1), DPS_YERPY   (B1JHA1)
False positive hits (sequences which do not belong to the set under consideration):
CEFD1_ACRCH (Q8J0E9)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1DPS; 1F30; 1F33; 1JI4; 1JI5; 1N1Q; 1QGH; 2BJY; 2BK6; 2BKC; 2CHP; 2FJC; 2IY4;

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