Entry: PS00830

General information about the entry

Entry name [info] GREAB_2
Accession [info] PS00830
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2001 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00651

Name and characterization of the entry

Description [info] Prokaryotic transcription elongation factors signature 2.
Pattern [info]
S-x(2)-S-[PK]-[LIVMF]-[AG]-x-[SAGNE]-[LIVM]-[LIVY]-x(4)-[DNG]-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 275 in 275 different sequences
Number of true positive hits 274 in 274 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 89
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.64 %
Recall (true positives / (true positives + false negatives)) 75.48 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
274 sequences

GFH1_THEAQ  (Q8VQD7), GFH1_THET2  (Q72JT8), GFH1_THET8  (Q5SJG6), 
GREA2_LACPL (Q88WQ9), GREA_ACIBS  (B0VSL8), GREA_ACICJ  (A5FWZ7), 
GREA_AGRFC  (Q8UDE5), GREA_AGRRK  (B9J753), GREA_AGRVS  (B9JYZ7), 
GREA_ALKEH  (Q0A765), GREA_ALKOO  (A8MLU4), GREA_AMOA5  (B3ESB4), 
GREA_ANASK  (B4UCU9), GREA_BACA2  (A7Z726), GREA_BACAA  (C3P968), 
GREA_BACAC  (C3L5Y5), GREA_BACAN  (Q81LK9), GREA_BACC1  (Q730F5), 
GREA_BACC7  (B7HQD7), GREA_BACCN  (A7GT58), GREA_BACCQ  (B9IYE4), 
GREA_BACCR  (Q817Z6), GREA_BACCZ  (Q634G5), GREA_BACHD  (Q9KDD7), 
GREA_BACHK  (Q6HDE6), GREA_BACLD  (Q65GT4), GREA_BACP2  (A8FFL6), 
GREA_BACSK  (Q5WHM1), GREA_BACSU  (P80240), GREA_BARBK  (A1UTG0), 
GREA_BARHE  (Q6G2M7), GREA_BARQU  (Q6FZ57), GREA_BART1  (A9IRC3), 
GREA_BAUCH  (Q1LSK1), GREA_BLOPB  (Q493U4), GREA_BORBU  (O51157), 
GREA_BRUA1  (B2S6W5), GREA_BRUA2  (Q2YRN8), GREA_BRUAB  (Q57C09), 
GREA_BRUC2  (A9M6H1), GREA_BRUMB  (C0REE0), GREA_BRUME  (P64271), 
GREA_BRUSI  (B0CHU1), GREA_BRUSU  (P64272), GREA_BUCA5  (B8D9G7), 
GREA_BUCAI  (P57464), GREA_BUCAT  (B8D7R9), GREA_CALS4  (Q8R7N0), 
GREA_CAMJ8  (A8FK75), GREA_CAMJD  (A7H585), GREA_CAMJE  (Q9PIK9), 
GREA_CAMJJ  (A1VY10), GREA_CAMJR  (Q5HWI0), GREA_CAMLR  (B9KDP9), 
GREA_CHESB  (Q11GG5), GREA_CHLL2  (B3EE12), GREA_CHLMU  (Q9PLU1), 
GREA_CHLP8  (B3QPT8), GREA_CHLPB  (B3EPH3), GREA_CHLPD  (A1BHJ3), 
GREA_CHLPN  (Q9Z7G4), GREA_CHLT3  (B3QV56), GREA_CHLTE  (Q8KCH5), 
GREA_CHLTR  (O84641), GREA_CLOAB  (Q97EB6), GREA_CLOB1  (A7FZA6), 
GREA_CLOB6  (C3KVU0), GREA_CLOB8  (A6LPL4), GREA_CLOBA  (B2UXU9), 
GREA_CLOBB  (B2TI25), GREA_CLOBH  (A5I7P5), GREA_CLOBJ  (C1FNC6), 
GREA_CLOBK  (B1IGJ3), GREA_CLOBL  (A7GJB4), GREA_CLOBM  (B1KTC2), 
GREA_CLOK1  (B9DY72), GREA_CLOK5  (A5N4L0), GREA_CLONN  (A0PXN3), 
GREA_CLOPH  (A9KIP3), GREA_CLOTH  (A3DJG6), GREA_DESAD  (C6BRV2), 
GREA_DESDA  (B8IZM4), GREA_DESMR  (C4XLU8), GREA_DESPS  (Q6AL57), 
GREA_DESVH  (Q725M4), GREA_DESVM  (B8DJL8), GREA_DESVV  (A1V9Q2), 
GREA_ECO57  (P0A6W7), GREA_ECOL6  (P0A6W6), GREA_ECOLI  (P0A6W5), 
GREA_FLAJ1  (A5FJJ8), GREA_FLAPJ  (A6H247), GREA_GEOKA  (Q5KWV4), 
GREA_GEOLS  (B3E3H5), GREA_GEOTN  (A4IR71), GREA_GRAFK  (A0M5U7), 
GREA_HAEDU  (Q7VL00), GREA_HAEIN  (P43881), GREA_HALHL  (A1WXX6), 
GREA_HELAH  (Q17WJ3), GREA_HELP2  (B6JM90), GREA_HELPG  (B5Z7M6), 
GREA_HELPH  (Q1CT06), GREA_HELPJ  (P64276), GREA_HELPS  (B2USW4), 
GREA_HELPY  (P64275), GREA_HYPNA  (Q0C4H1), GREA_LACF3  (B2GD90), 
GREA_LEGPA  (Q5X1R6), GREA_LEGPC  (A5IAV2), GREA_LEGPH  (Q5ZS95), 
GREA_LEGPL  (Q5WTH5), GREA_LEUMM  (Q03YY4), GREA_LISIN  (P64278), 
GREA_LISMC  (C1KVE3), GREA_LISMF  (Q71ZH4), GREA_LISMH  (B8DE15), 
GREA_LISMO  (P64277), GREA_LISW6  (A0AIU5), GREA_MACCJ  (B9E6Y8), 
GREA_MAGMM  (A0LC15), GREA_MARMM  (Q0AMQ6), GREA_MESFL  (Q6F215), 
GREA_METCA  (Q607B0), GREA_METNO  (B8IBN8), GREA_METS4  (B0U8M0), 
GREA_MYCA5  (B3PM73), GREA_MYCA9  (B1MKJ7), GREA_MYCBO  (P64280), 
GREA_MYCBP  (A1KHL8), GREA_MYCBT  (C1AM72), GREA_MYCCT  (Q2SSM5), 
GREA_MYCGE  (P47524), GREA_MYCH2  (Q5ZZL8), GREA_MYCH7  (Q4A759), 
GREA_MYCHJ  (Q4A921), GREA_MYCLB  (B8ZT53), GREA_MYCLE  (P46808), 
GREA_MYCPN  (P78019), GREA_MYCPU  (Q98Q16), GREA_MYCS2  (A0R2X1), 
GREA_MYCTA  (A5U1C6), GREA_MYCTO  (P9WMT8), GREA_MYCTU  (P9WMT9), 
GREA_MYCVP  (A1TE43), GREA_NAUPA  (B9L822), GREA_NITOC  (Q3J822), 
GREA_NOVAD  (Q2G656), GREA_OCEIH  (Q8EPT6), GREA_OCHA4  (A6WZH2), 
GREA_OENOB  (Q04EK0), GREA_ORITB  (A5CE64), GREA_ORITI  (B3CTQ6), 
GREA_PASMU  (P57801), GREA_PELCD  (Q3A452), GREA_PELPB  (B4SBF9), 
GREA_PELPD  (A1AS07), GREA_PETMO  (A9BFC0), GREA_PHEZH  (B4RH54), 
GREA_PROA2  (B4S9B2), GREA_PROVI  (A4SFN0), GREA_PSEAE  (Q9HV46), 
GREA_PSESM  (Q87WP5), GREA_PSYA2  (Q4FTJ2), GREA_PSYCK  (Q1QCJ2), 
GREA_PSYIN  (A1ST36), GREA_PSYWF  (A5WDP3), GREA_RALSO  (Q8XZ82), 
GREA_RHIE6  (B3PUK3), GREA_RHIEC  (Q2K600), GREA_RHIL3  (Q1MDR7), 
GREA_RHILO  (Q98I49), GREA_RHILV  (O68546), GREA_RHILW  (B5ZXG2), 
GREA_RHIME  (P56894), GREA_RHOE4  (C1A2Y4), GREA_RHORT  (Q2RQB1), 
GREA_RICB8  (A8GUN3), GREA_RICBR  (Q1RKI0), GREA_RICCK  (A8F083), 
GREA_RICCN  (Q92FZ5), GREA_RICFE  (Q4UJS8), GREA_RICPR  (P27640), 
GREA_RICTY  (Q68VQ2), GREA_SACEN  (A4F866), GREA_SALTI  (P64282), 
GREA_SALTY  (P64281), GREA_SHIFL  (P0A6W8), GREA_SINMW  (A6U8X4), 
GREA_SPHAL  (Q1GUG9), GREA_SPHWW  (A5V3E1), GREA_STAA1  (A7X319), 
GREA_STAA2  (A6U279), GREA_STAA3  (Q2FGB6), GREA_STAA8  (Q2FXW7), 
GREA_STAA9  (A5ITD5), GREA_STAAB  (Q2YT68), GREA_STAAC  (Q5HFF2), 
GREA_STAAE  (A6QHF1), GREA_STAAM  (P64283), GREA_STAAN  (P99156), 
GREA_STAAR  (Q6GG93), GREA_STAAS  (Q6G8V9), GREA_STAAT  (A8Z4E8), 
GREA_STAAW  (P64284), GREA_STACT  (B9DNJ3), GREA_STAEQ  (Q5HNU0), 
GREA_STAES  (Q8CSB3), GREA_STAS1  (Q49Y48), GREA_STRA1  (Q3JZS3), 
GREA_STRA3  (Q8E3U5), GREA_STRA5  (Q8DY80), GREA_STRCO  (Q9ADK2), 
GREA_STRGC  (A8AVM5), GREA_STRMU  (Q8DSP7), GREA_STRP1  (P64285), 
GREA_STRP2  (Q04HS9), GREA_STRP3  (P0DB46), GREA_STRP4  (B5E681), 
GREA_STRP6  (Q5XDQ7), GREA_STRP7  (C1C8A8), GREA_STRP8  (P64287), 
GREA_STRPG  (A2RGA4), GREA_STRPJ  (B8ZLB8), GREA_STRPN  (Q97PT2), 
GREA_STRPQ  (P0DB47), GREA_STRR6  (Q8DP42), GREA_STRS2  (A4W3E8), 
GREA_STRSV  (A3CPS3), GREA_STRSY  (A4VX43), GREA_STRT1  (Q5M1J6), 
GREA_STRT2  (Q5M638), GREA_STRTD  (Q03MH4), GREA_STRU0  (B9DTR1), 
GREA_STRZJ  (C1CFA2), GREA_STRZP  (C1CLL5), GREA_STRZT  (C1CSD7), 
GREA_SYNAS  (Q2LR03), GREA_SYNFM  (A0LK20), GREA_THEMA  (Q9X232), 
GREA_THENN  (B9K7Y7), GREA_THEP1  (A5ILE7), GREA_THEP3  (B0KCE3), 
GREA_THEPX  (B0K5B9), GREA_THERP  (B9L0L0), GREA_THESQ  (B1LAX5), 
GREA_THEYD  (B5YJG9), GREA_THICR  (Q31H97), GREA_THISH  (B8GNX7), 
GREA_TREPA  (O83063), GREA_TREPS  (B2S1W7), GREA_VIBCH  (Q9KU89), 
GREA_VIBPA  (Q87LZ2), GREA_VIBVU  (Q8DBW9), GREA_YERPE  (Q8ZBB3), 
GREA_YERPG  (A9R594), GREA_ZYMMO  (O50237), GREB_ECO57  (P64274), 
GREB_ECOL6  (P64273), GREB_ECOLI  (P30128), GREB_HAEDU  (Q7VM42), 
GREB_HAEIN  (P43882), GREB_PASMU  (P57802), GREB_PSEPK  (Q88KH5), 
GREB_PSESM  (Q883T5), GREB_SALTI  (Q8Z217), GREB_SALTY  (Q8ZLJ2), 
GREB_VIBCH  (Q9KNL7), GREB_VIBPA  (Q87TB8), GREB_VIBVU  (Q8DDU7), 
GREB_VIBVY  (Q7MPX6), GREB_XANAC  (Q8PJ11), GREB_XANCP  (Q8P7P8), 
GREB_YERPE  (Q8ZJH2)
» More

UniProtKB/Swiss-Prot
False negative sequences
89 sequences

GREA1_LACPL (Q88ZS9), GREA_ACHLI  (A9NGN4), GREA_ARCB4  (A8ESG0), 
GREA_AZOC5  (A8HR94), GREA_BEII9  (B2IHJ7), GREA_BRADU  (Q89DR1), 
GREA_BRASB  (A5ER96), GREA_BUCAP  (Q8K9G6), GREA_BUCBP  (P59489), 
GREA_BUCCC  (Q057J4), GREA_CAMHC  (A7I2X0), GREA_CAUCN  (B8H1V7), 
GREA_CAUCR  (Q9A4I3), GREA_CAUSK  (B0SZ84), GREA_CHLAA  (A9WK05), 
GREA_CHLAD  (B8G358), GREA_CHLCH  (Q3ATA7), GREA_CHLSY  (B9LBX1), 
GREA_CLOP1  (Q0TMI6), GREA_CLOPE  (Q8XHL7), GREA_CLOPS  (Q0SQ85), 
GREA_DEHM1  (Q3Z8E7), GREA_FINM2  (B0S216), GREA_FRAP2  (B0TYL2), 
GREA_FRAT1  (Q14GS9), GREA_FRATF  (A7NDI1), GREA_FRATH  (Q2A2C7), 
GREA_FRATM  (B2SDF5), GREA_FRATN  (A0Q5P2), GREA_FRATO  (Q0BKZ4), 
GREA_FRATT  (Q5NFC6), GREA_FRATW  (A4IZ52), GREA_HAMD5  (C4K7K9), 
GREA_HELHP  (Q7VJT9), GREA_JANSC  (Q28V47), GREA_LACLA  (Q9CHT2), 
GREA_LACLM  (A2RIW3), GREA_LACLS  (Q030Z7), GREA_LEUCK  (B1MX52), 
GREA_MYCAP  (A5IYH4), GREA_MYCGA  (Q7NBS1), GREA_MYCMS  (Q6MTU9), 
GREA_NEIMA  (Q9JTT4), GREA_NEIMB  (Q9JYU3), GREA_NEOSM  (Q2GD99), 
GREA_NITHX  (Q1QJF3), GREA_NITSB  (A6Q4L2), GREA_NITWN  (Q3SPT8), 
GREA_PARDP  (A1AZ46), GREA_PELUB  (Q4FPG2), GREA_PEPD6  (Q181F4), 
GREA_POLNA  (A1VN58), GREA_PSEPK  (Q88DU7), GREA_RHOBA  (Q7UVA0), 
GREA_RHOP5  (Q07JJ7), GREA_RHOPA  (Q6N2H8), GREA_RHOPB  (Q20ZR6), 
GREA_RHOPT  (B3QJZ1), GREA_RHOS1  (A3PGS3), GREA_RHOS4  (Q3J5L0), 
GREA_RHOS5  (A4WVE8), GREA_RHOSK  (B9KLF5), GREA_ROSCS  (A7NFC5), 
GREA_ROSS1  (A5UPG5), GREA_RUEPO  (Q5LXA4), GREA_RUTMC  (A1AXD2), 
GREA_STAHJ  (Q4L6V7), GREA_STRAW  (Q82I57), GREA_STRPI  (B1ICT9), 
GREA_SULNB  (A6Q9U9), GREA_SYNWW  (Q0B0N4), GREA_THEAB  (B7ID86), 
GREA_THEM4  (A6LMS3), GREA_UREP2  (B1AIU2), GREA_UREPA  (Q9PQI7), 
GREA_UREU1  (B5ZBB2), GREA_VEREI  (A1WH11), GREA_VESOH  (A5CVW9), 
GREA_WIGBR  (Q8D2W9), GREA_WOLSU  (Q7M9N2), GREA_XANAC  (Q8PLD9), 
GREA_XANCP  (Q9L4D3), GREA_XYLF2  (B2I844), GREA_XYLFA  (Q9PEC0), 
GREA_XYLFM  (B0U568), GREA_XYLFT  (Q87EB7), GREB_NEIMA  (Q9JVD0), 
GREB_NEIMB  (Q9K0C5), GREB_PSEAE  (Q9HZY5)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

PCDH1_HUMAN (Q08174)

		
PDB
[Detailed view]
7 PDB

1GRJ; 2ETN; 2EUL; 2F23; 2P4V; 3AOH; 3AOI

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission