Entry: PS00830

General information about the entry

Entry name [info] GREAB_2
Accession [info] PS00830
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2001 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00651

Name and characterization of the entry

Description [info] Prokaryotic transcription elongation factors signature 2.
Pattern [info]
S-x(2)-S-[PK]-[LIVMF]-[AG]-x-[SAGNE]-[LIVM]-[LIVY]-x(4)-[DNG]-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 275 in 275 different sequences
Number of true positive hits 274 in 274 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 89
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.64 %
Recall (true positives / (true positives + false negatives)) 75.48 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
274 sequences

GFH1_THEAQ  (Q8VQD7    ), GFH1_THET2  (Q72JT8    ), GFH1_THET8  (Q5SJG6    ), 
GREA2_LACPL (Q88WQ9    ), GREA_ACIBS  (B0VSL8    ), GREA_ACICJ  (A5FWZ7    ), 
GREA_AGRFC  (Q8UDE5    ), GREA_AGRRK  (B9J753    ), GREA_AGRVS  (B9JYZ7    ), 
GREA_ALKEH  (Q0A765    ), GREA_ALKOO  (A8MLU4    ), GREA_AMOA5  (B3ESB4    ), 
GREA_ANASK  (B4UCU9    ), GREA_BACAA  (C3P968    ), GREA_BACAC  (C3L5Y5    ), 
GREA_BACAN  (Q81LK9    ), GREA_BACC1  (Q730F5    ), GREA_BACC7  (B7HQD7    ), 
GREA_BACCN  (A7GT58    ), GREA_BACCQ  (B9IYE4    ), GREA_BACCR  (Q817Z6    ), 
GREA_BACCZ  (Q634G5    ), GREA_BACHD  (Q9KDD7    ), GREA_BACHK  (Q6HDE6    ), 
GREA_BACLD  (Q65GT4    ), GREA_BACMF  (A7Z726    ), GREA_BACP2  (A8FFL6    ), 
GREA_BACSK  (Q5WHM1    ), GREA_BACSU  (P80240    ), GREA_BARBK  (A1UTG0    ), 
GREA_BARHE  (Q6G2M7    ), GREA_BARQU  (Q6FZ57    ), GREA_BART1  (A9IRC3    ), 
GREA_BAUCH  (Q1LSK1    ), GREA_BLOPB  (Q493U4    ), GREA_BORBU  (O51157    ), 
GREA_BRUA1  (B2S6W5    ), GREA_BRUA2  (Q2YRN8    ), GREA_BRUAB  (Q57C09    ), 
GREA_BRUC2  (A9M6H1    ), GREA_BRUMB  (C0REE0    ), GREA_BRUME  (P64271    ), 
GREA_BRUSI  (B0CHU1    ), GREA_BRUSU  (P64272    ), GREA_BUCA5  (B8D9G7    ), 
GREA_BUCAI  (P57464    ), GREA_BUCAT  (B8D7R9    ), GREA_CALS4  (Q8R7N0    ), 
GREA_CAMJ8  (A8FK75    ), GREA_CAMJD  (A7H585    ), GREA_CAMJE  (Q9PIK9    ), 
GREA_CAMJJ  (A1VY10    ), GREA_CAMJR  (Q5HWI0    ), GREA_CAMLR  (B9KDP9    ), 
GREA_CHESB  (Q11GG5    ), GREA_CHLL2  (B3EE12    ), GREA_CHLMU  (Q9PLU1    ), 
GREA_CHLP8  (B3QPT8    ), GREA_CHLPB  (B3EPH3    ), GREA_CHLPD  (A1BHJ3    ), 
GREA_CHLPM  (A4SFN0    ), GREA_CHLPN  (Q9Z7G4    ), GREA_CHLT3  (B3QV56    ), 
GREA_CHLTE  (Q8KCH5    ), GREA_CHLTR  (O84641    ), GREA_CLOAB  (Q97EB6    ), 
GREA_CLOB1  (A7FZA6    ), GREA_CLOB6  (C3KVU0    ), GREA_CLOB8  (A6LPL4    ), 
GREA_CLOBA  (B2UXU9    ), GREA_CLOBB  (B2TI25    ), GREA_CLOBH  (A5I7P5    ), 
GREA_CLOBJ  (C1FNC6    ), GREA_CLOBK  (B1IGJ3    ), GREA_CLOBL  (A7GJB4    ), 
GREA_CLOBM  (B1KTC2    ), GREA_CLOK1  (B9DY72    ), GREA_CLOK5  (A5N4L0    ), 
GREA_CLONN  (A0PXN3    ), GREA_CLOPH  (A9KIP3    ), GREA_CLOTH  (A3DJG6    ), 
GREA_DESAD  (C6BRV2    ), GREA_DESDA  (B8IZM4    ), GREA_DESMR  (C4XLU8    ), 
GREA_DESPS  (Q6AL57    ), GREA_DESVH  (Q725M4    ), GREA_DESVM  (B8DJL8    ), 
GREA_DESVV  (A1V9Q2    ), GREA_ECO57  (P0A6W7    ), GREA_ECOL6  (P0A6W6    ), 
GREA_ECOLI  (P0A6W5    ), GREA_FLAJ1  (A5FJJ8    ), GREA_FLAPJ  (A6H247    ), 
GREA_GEOKA  (Q5KWV4    ), GREA_GEOLS  (B3E3H5    ), GREA_GEOTN  (A4IR71    ), 
GREA_GRAFK  (A0M5U7    ), GREA_HAEDU  (Q7VL00    ), GREA_HAEIN  (P43881    ), 
GREA_HALHL  (A1WXX6    ), GREA_HELAH  (Q17WJ3    ), GREA_HELP2  (B6JM90    ), 
GREA_HELPG  (B5Z7M6    ), GREA_HELPH  (Q1CT06    ), GREA_HELPJ  (P64276    ), 
GREA_HELPS  (B2USW4    ), GREA_HELPY  (P64275    ), GREA_HYPNA  (Q0C4H1    ), 
GREA_LACF3  (B2GD90    ), GREA_LEGPA  (Q5X1R6    ), GREA_LEGPC  (A5IAV2    ), 
GREA_LEGPH  (Q5ZS95    ), GREA_LEGPL  (Q5WTH5    ), GREA_LEUMM  (Q03YY4    ), 
GREA_LISIN  (P64278    ), GREA_LISMC  (C1KVE3    ), GREA_LISMF  (Q71ZH4    ), 
GREA_LISMH  (B8DE15    ), GREA_LISMO  (P64277    ), GREA_LISW6  (A0AIU5    ), 
GREA_MACCJ  (B9E6Y8    ), GREA_MAGMM  (A0LC15    ), GREA_MARMM  (Q0AMQ6    ), 
GREA_MESFL  (Q6F215    ), GREA_METCA  (Q607B0    ), GREA_METNO  (B8IBN8    ), 
GREA_METS4  (B0U8M0    ), GREA_MYCA5  (B3PM73    ), GREA_MYCA9  (B1MKJ7    ), 
GREA_MYCBO  (P64280    ), GREA_MYCBP  (A1KHL8    ), GREA_MYCBT  (C1AM72    ), 
GREA_MYCCT  (Q2SSM5    ), GREA_MYCGE  (P47524    ), GREA_MYCH2  (Q5ZZL8    ), 
GREA_MYCH7  (Q4A759    ), GREA_MYCHJ  (Q4A921    ), GREA_MYCLB  (B8ZT53    ), 
GREA_MYCLE  (P46808    ), GREA_MYCPN  (P78019    ), GREA_MYCPU  (Q98Q16    ), 
GREA_MYCS2  (A0R2X1    ), GREA_MYCTA  (A5U1C6    ), GREA_MYCTO  (P9WMT8    ), 
GREA_MYCTU  (P9WMT9    ), GREA_MYCVP  (A1TE43    ), GREA_NAUPA  (B9L822    ), 
GREA_NITOC  (Q3J822    ), GREA_NOVAD  (Q2G656    ), GREA_OCEIH  (Q8EPT6    ), 
GREA_OCHA4  (A6WZH2    ), GREA_OENOB  (Q04EK0    ), GREA_ORITB  (A5CE64    ), 
GREA_ORITI  (B3CTQ6    ), GREA_PASMU  (P57801    ), GREA_PELCD  (Q3A452    ), 
GREA_PELPB  (B4SBF9    ), GREA_PELPD  (A1AS07    ), GREA_PETMO  (A9BFC0    ), 
GREA_PHEZH  (B4RH54    ), GREA_PROA2  (B4S9B2    ), GREA_PSEAE  (Q9HV46    ), 
GREA_PSESM  (Q87WP5    ), GREA_PSYA2  (Q4FTJ2    ), GREA_PSYCK  (Q1QCJ2    ), 
GREA_PSYIN  (A1ST36    ), GREA_PSYWF  (A5WDP3    ), GREA_RALSO  (Q8XZ82    ), 
GREA_RHIE6  (B3PUK3    ), GREA_RHIEC  (Q2K600    ), GREA_RHIL3  (Q1MDR7    ), 
GREA_RHILO  (Q98I49    ), GREA_RHILV  (O68546    ), GREA_RHILW  (B5ZXG2    ), 
GREA_RHIME  (P56894    ), GREA_RHOE4  (C1A2Y4    ), GREA_RHORT  (Q2RQB1    ), 
GREA_RICB8  (A8GUN3    ), GREA_RICBR  (Q1RKI0    ), GREA_RICCK  (A8F083    ), 
GREA_RICCN  (Q92FZ5    ), GREA_RICFE  (Q4UJS8    ), GREA_RICPR  (P27640    ), 
GREA_RICTY  (Q68VQ2    ), GREA_SACEN  (A4F866    ), GREA_SALTI  (P64282    ), 
GREA_SALTY  (P64281    ), GREA_SHIFL  (P0A6W8    ), GREA_SINMW  (A6U8X4    ), 
GREA_SPHAL  (Q1GUG9    ), GREA_SPHWW  (A5V3E1    ), GREA_STAA1  (A7X319    ), 
GREA_STAA2  (A6U279    ), GREA_STAA3  (Q2FGB6    ), GREA_STAA8  (Q2FXW7    ), 
GREA_STAA9  (A5ITD5    ), GREA_STAAB  (Q2YT68    ), GREA_STAAC  (Q5HFF2    ), 
GREA_STAAE  (A6QHF1    ), GREA_STAAM  (P64283    ), GREA_STAAN  (P99156    ), 
GREA_STAAR  (Q6GG93    ), GREA_STAAS  (Q6G8V9    ), GREA_STAAT  (A8Z4E8    ), 
GREA_STAAW  (P64284    ), GREA_STACT  (B9DNJ3    ), GREA_STAEQ  (Q5HNU0    ), 
GREA_STAES  (Q8CSB3    ), GREA_STAS1  (Q49Y48    ), GREA_STRA1  (Q3JZS3    ), 
GREA_STRA3  (Q8E3U5    ), GREA_STRA5  (Q8DY80    ), GREA_STRCO  (Q9ADK2    ), 
GREA_STRGC  (A8AVM5    ), GREA_STRMU  (Q8DSP7    ), GREA_STRP1  (P64285    ), 
GREA_STRP2  (Q04HS9    ), GREA_STRP3  (P0DB46    ), GREA_STRP4  (B5E681    ), 
GREA_STRP6  (Q5XDQ7    ), GREA_STRP7  (C1C8A8    ), GREA_STRP8  (P64287    ), 
GREA_STRPG  (A2RGA4    ), GREA_STRPJ  (B8ZLB8    ), GREA_STRPN  (Q97PT2    ), 
GREA_STRPQ  (P0DB47    ), GREA_STRR6  (Q8DP42    ), GREA_STRS2  (A4W3E8    ), 
GREA_STRSV  (A3CPS3    ), GREA_STRSY  (A4VX43    ), GREA_STRT1  (Q5M1J6    ), 
GREA_STRT2  (Q5M638    ), GREA_STRTD  (Q03MH4    ), GREA_STRU0  (B9DTR1    ), 
GREA_STRZJ  (C1CFA2    ), GREA_STRZP  (C1CLL5    ), GREA_STRZT  (C1CSD7    ), 
GREA_SYNAS  (Q2LR03    ), GREA_SYNFM  (A0LK20    ), GREA_THEMA  (Q9X232    ), 
GREA_THENN  (B9K7Y7    ), GREA_THEP1  (A5ILE7    ), GREA_THEP3  (B0KCE3    ), 
GREA_THEPX  (B0K5B9    ), GREA_THERP  (B9L0L0    ), GREA_THESQ  (B1LAX5    ), 
GREA_THEYD  (B5YJG9    ), GREA_THICR  (Q31H97    ), GREA_THISH  (B8GNX7    ), 
GREA_TREPA  (O83063    ), GREA_TREPS  (B2S1W7    ), GREA_VIBCH  (Q9KU89    ), 
GREA_VIBPA  (Q87LZ2    ), GREA_VIBVU  (Q8DBW9    ), GREA_YERPE  (Q8ZBB3    ), 
GREA_YERPG  (A9R594    ), GREA_ZYMMO  (O50237    ), GREB_ECO57  (P64274    ), 
GREB_ECOL6  (P64273    ), GREB_ECOLI  (P30128    ), GREB_HAEDU  (Q7VM42    ), 
GREB_HAEIN  (P43882    ), GREB_PASMU  (P57802    ), GREB_PSEPK  (Q88KH5    ), 
GREB_PSESM  (Q883T5    ), GREB_SALTI  (Q8Z217    ), GREB_SALTY  (Q8ZLJ2    ), 
GREB_VIBCH  (Q9KNL7    ), GREB_VIBPA  (Q87TB8    ), GREB_VIBVU  (Q8DDU7    ), 
GREB_VIBVY  (Q7MPX6    ), GREB_XANAC  (Q8PJ11    ), GREB_XANCP  (Q8P7P8    ), 
GREB_YERPE  (Q8ZJH2    )
» more

UniProtKB/Swiss-Prot
False negative sequences
89 sequences

GREA1_LACPL (Q88ZS9    ), GREA_ACHLI  (A9NGN4    ), GREA_ARCB4  (A8ESG0    ), 
GREA_AZOC5  (A8HR94    ), GREA_BEII9  (B2IHJ7    ), GREA_BRADU  (Q89DR1    ), 
GREA_BRASB  (A5ER96    ), GREA_BUCAP  (Q8K9G6    ), GREA_BUCBP  (P59489    ), 
GREA_BUCCC  (Q057J4    ), GREA_CAMHC  (A7I2X0    ), GREA_CAUCN  (B8H1V7    ), 
GREA_CAUCR  (Q9A4I3    ), GREA_CAUSK  (B0SZ84    ), GREA_CHLAA  (A9WK05    ), 
GREA_CHLAD  (B8G358    ), GREA_CHLCH  (Q3ATA7    ), GREA_CHLSY  (B9LBX1    ), 
GREA_CLOP1  (Q0TMI6    ), GREA_CLOPE  (Q8XHL7    ), GREA_CLOPS  (Q0SQ85    ), 
GREA_DEHM1  (Q3Z8E7    ), GREA_FINM2  (B0S216    ), GREA_FRAP2  (B0TYL2    ), 
GREA_FRAT1  (Q14GS9    ), GREA_FRATF  (A7NDI1    ), GREA_FRATH  (Q2A2C7    ), 
GREA_FRATM  (B2SDF5    ), GREA_FRATN  (A0Q5P2    ), GREA_FRATO  (Q0BKZ4    ), 
GREA_FRATT  (Q5NFC6    ), GREA_FRATW  (A4IZ52    ), GREA_HAMD5  (C4K7K9    ), 
GREA_HELHP  (Q7VJT9    ), GREA_JANSC  (Q28V47    ), GREA_LACLA  (Q9CHT2    ), 
GREA_LACLM  (A2RIW3    ), GREA_LACLS  (Q030Z7    ), GREA_LEUCK  (B1MX52    ), 
GREA_MYCAP  (A5IYH4    ), GREA_MYCGA  (Q7NBS1    ), GREA_MYCMS  (Q6MTU9    ), 
GREA_NEIMA  (Q9JTT4    ), GREA_NEIMB  (Q9JYU3    ), GREA_NEOSM  (Q2GD99    ), 
GREA_NITHX  (Q1QJF3    ), GREA_NITSB  (A6Q4L2    ), GREA_NITWN  (Q3SPT8    ), 
GREA_PARDP  (A1AZ46    ), GREA_PELUB  (Q4FPG2    ), GREA_PEPD6  (Q181F4    ), 
GREA_POLNA  (A1VN58    ), GREA_PSEPK  (Q88DU7    ), GREA_RHOBA  (Q7UVA0    ), 
GREA_RHOP5  (Q07JJ7    ), GREA_RHOPA  (Q6N2H8    ), GREA_RHOPB  (Q20ZR6    ), 
GREA_RHOPT  (B3QJZ1    ), GREA_RHOS1  (A3PGS3    ), GREA_RHOS4  (Q3J5L0    ), 
GREA_RHOS5  (A4WVE8    ), GREA_RHOSK  (B9KLF5    ), GREA_ROSCS  (A7NFC5    ), 
GREA_ROSS1  (A5UPG5    ), GREA_RUEPO  (Q5LXA4    ), GREA_RUTMC  (A1AXD2    ), 
GREA_STAHJ  (Q4L6V7    ), GREA_STRAW  (Q82I57    ), GREA_STRPI  (B1ICT9    ), 
GREA_SULNB  (A6Q9U9    ), GREA_SYNWW  (Q0B0N4    ), GREA_THEAB  (B7ID86    ), 
GREA_THEM4  (A6LMS3    ), GREA_UREP2  (B1AIU2    ), GREA_UREPA  (Q9PQI7    ), 
GREA_UREU1  (B5ZBB2    ), GREA_VEREI  (A1WH11    ), GREA_VESOH  (A5CVW9    ), 
GREA_WIGBR  (Q8D2W9    ), GREA_WOLSU  (Q7M9N2    ), GREA_XANAC  (Q8PLD9    ), 
GREA_XANCP  (Q9L4D3    ), GREA_XYLF2  (B2I844    ), GREA_XYLFA  (Q9PEC0    ), 
GREA_XYLFM  (B0U568    ), GREA_XYLFT  (Q87EB7    ), GREB_NEIMA  (Q9JVD0    ), 
GREB_NEIMB  (Q9K0C5    ), GREB_PSEAE  (Q9HZY5    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

PCDH1_HUMAN (Q08174    )

		
PDB
[Detailed view]
8 PDB

1GRJ; 2ETN; 2EUL; 2F23; 2P4V; 3AOH; 3AOI; 4WQT

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