Entry: PS00836

General information about the entry
Entry name ALADH_PNT_1
Accession number PS00836
Entry type PATTERN
Date OCT-1993 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00654
Name and characterization of the entry
DescriptionAlanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1.
Pattern [GA]-[LIVM]-[PKV]-x(0,1)-E-x(3)-[NG]-E-x(1,3)-R-[VT]-[AG]-x-[ST]-P-x- [GSTVN]-[VA]-x(2)-[LI]-x-[KRHNGSED]-x-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 35 hits in 35 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 35 hits in 35 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 9
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 79.55 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DHA1_STAA3  (Q2FH00), DHA1_STAA8  (Q2FYJ2), DHA1_STAAC  (Q5HFY4), 
DHA1_STAAM  (P63478), DHA1_STAAN  (P99151), DHA1_STAAR  (Q6GGW9), 
DHA1_STAAS  (Q6G9C3), DHA1_STAAW  (Q8NWQ3), DHA2_STAA3  (Q2FG29), 
DHA2_STAA8  (Q2FXL7), DHA2_STAAB  (Q2YTD1), DHA2_STAAC  (Q5HF65), 
DHA2_STAAM  (Q931P7), DHA2_STAAN  (Q99TF4), DHA2_STAAR  (Q6GFZ8), 
DHA2_STAAS  (Q6G8L8), DHA2_STAAW  (Q8NW54), DHA_BACSU   (Q08352), 
DHA_GEOSE   (P17557), DHA_LYSSH   (P17556), DHA_MYCS2   (A0QVQ8), 
DHA_MYCSM   (Q8KY18), DHA_MYCTU   (P30234), DHA_OCEIH   (Q8CX61), 
DHA_STAEQ   (Q5HNJ6), DHA_STAES   (Q8CNW8), DHA_STAHJ   (Q4L750), 
NNTM_BOVIN  (P11024), NNTM_HUMAN  (Q13423), NNTM_MOUSE  (Q61941), 
PNTAA_RHORT (Q2RSB2), PNTAA_RHORU (P0C186), PNTAA_RICPR (P41077), 
PNTA_ECOLI  (P07001), PNTA_HAEIN  (P43842)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AASS_ARATH  (Q9SMZ4), AASS_BOVIN  (A8E657), AASS_HUMAN  (Q9UDR5), 
AASS_MOUSE  (Q99K67), AASS_RAT    (A2VCW9), DHA1_STAAB  (Q2YY66), 
DHA_METMP   (Q6LX40), DHA_STAS1   (Q49YD9), PNTA_RHOSH  (Q9ALA2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1F8G; 1HZZ; 1L7D; 1L7E; 1NM5; 1PTJ; 1U28; 1U2D; 1U2G; 1X13; 1X14; 1X15; 1XLT; 2BRU; 2FR8; 2FRD; 2FSV; 2OO5; 2OOR; 2VHV; 2VHW; 2VHX; 2VHY; 2VHZ; 2VOE; 2VOJ;

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