Entry: PS00841

Forthcoming changes to the profile format
General information about the entry

Entry name [info] XPG_1
Accession [info] PS00841
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); APR-2006 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00658

Name and characterization of the entry

Description [info] XPG protein signature 1.
Pattern [info]
[VILT]-[KREIT]-[PV]-x-[FYIL]-[VI]-[FW]-D-G-x(2)-[PILHSTF]-x-[LVCQMFAKS]-
K.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 189 in 189 different sequences
Number of true positive hits 189 in 189 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 26
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.91 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
189 sequences

DIN7_YEAST  (Q12086), ERCC5_HUMAN (P28715), ERCC5_MOUSE (P35689), 
ERCC5_XENLA (P14629), EXO1_DANRE  (Q803U7), EXO1_DROME  (Q24558), 
EXO1_HUMAN  (Q9UQ84), EXO1_MOUSE  (Q9QZ11), EXO1_ORYSJ  (Q60GC1), 
EXO1_SCHPO  (P53695), EXO1_XENLA  (Q9W6K2), EXO1_YEAST  (P39875), 
FEN11_LACBS (B0DSN9), FEN11_ORYSI (B8AW67), FEN11_ORYSJ (Q9SXQ6), 
FEN11_PHYPA (A9S0B8), FEN11_SORBI (C5YUK3), FEN12_LACBS (B0E412), 
FEN12_ORYSI (B8AMS4), FEN12_ORYSJ (Q75LI2), FEN12_PHYPA (A9U328), 
FEN12_SORBI (C5WU23), FEN1A_DANRE (Q6TNU4), FEN1A_XENLA (P70040), 
FEN1B_XENLA (P70054), FEN1_AEDAE  (Q178M1), FEN1_AJECH  (C6HQJ2), 
FEN1_AJECN  (A6QV55), FEN1_AJEDR  (C5GPA7), FEN1_AJEDS  (C5JVG7), 
FEN1_ANOFI  (C3KJE6), FEN1_ANOGA  (Q7Q323), FEN1_ARATH  (O65251), 
FEN1_ARTOC  (C5FZT5), FEN1_ASHGO  (Q75DS8), FEN1_ASPCL  (A1CJ75), 
FEN1_ASPFC  (B0XZ33), FEN1_ASPFN  (B8NV37), FEN1_ASPFU  (Q4WWJ1), 
FEN1_ASPNC  (A5ABU3), FEN1_ASPTN  (Q0CBS0), FEN1_BOVIN  (Q58DH8), 
FEN1_BRAFL  (C3ZBT0), FEN1_BRUMA  (A8QCH0), FEN1_CAEBR  (A8XL25), 
FEN1_CAEEL  (Q9N3T2), FEN1_CANAL  (Q5A6K8), FEN1_CANAW  (C4YLS2), 
FEN1_CANDC  (B9WLQ5), FEN1_CANGA  (Q6FM28), FEN1_CANTT  (C5M2X8), 
FEN1_CHICK  (Q5ZLN4), FEN1_CHLRE  (A8J2Z9), FEN1_CLAL4  (C4YBJ8), 
FEN1_COPC7  (A8NQC2), FEN1_COPCI  (Q76F73), FEN1_CRYMR  (B6AFP1), 
FEN1_CRYNB  (P0CS61), FEN1_CRYNJ  (P0CS60), FEN1_CRYPI  (A3FPN7), 
FEN1_DEBHA  (Q6BLF4), FEN1_DICDI  (Q54NU0), FEN1_DROAN  (B3MDA3), 
FEN1_DROER  (B3NP61), FEN1_DROGR  (B4J6M4), FEN1_DROME  (Q7K7A9), 
FEN1_DROMO  (B4KNM1), FEN1_DROPE  (B4GIM3), FEN1_DROPS  (B5DUR8), 
FEN1_DROSE  (B4HTA1), FEN1_DROSI  (B4QIG6), FEN1_DROVI  (B4LM90), 
FEN1_DROWI  (B4MR84), FEN1_DROYA  (B4P5U9), FEN1_EMENI  (Q5B9L6), 
FEN1_ENTDS  (B0EN90), FEN1_ENTHI  (C4M6G8), FEN1_GLOMM  (D3TQJ5), 
FEN1_HUMAN  (P39748), FEN1_KLULA  (Q6CLH4), FEN1_LACTC  (C5DGG4), 
FEN1_LEIBR  (A4HFE4), FEN1_LEIIN  (A4I2L4), FEN1_LEIMA  (Q4FYU7), 
FEN1_LODEL  (A5E121), FEN1_MACFA  (Q4R5U5), FEN1_MAGO7  (A4QS18), 
FEN1_MAIZE  (B4FHY0), FEN1_MICSR  (C1E3X9), FEN1_MONBE  (A9VB27), 
FEN1_MOUSE  (P39749), FEN1_NAEGR  (D2V434), FEN1_NECH7  (C7Z125), 
FEN1_NEMVE  (A7RRJ0), FEN1_NEOFI  (A1D8A4), FEN1_NEUCR  (A7UW97), 
FEN1_OSMMO  (C1BM18), FEN1_OSTLU  (A4S1G4), FEN1_OSTTA  (Q013G9), 
FEN1_PENCW  (B6HEM2), FEN1_PENMQ  (B6QT52), FEN1_PHANO  (Q0UZR3), 
FEN1_PHATC  (B7G7Y7), FEN1_PHYIT  (D0MY34), FEN1_PICGU  (A5DCF5), 
FEN1_PICPG  (C4QZ20), FEN1_PICST  (A3M056), FEN1_PLABA  (Q4Z015), 
FEN1_PLACH  (Q4XXP8), FEN1_PLAF7  (Q7K734), FEN1_PLAFA  (Q9GZ01), 
FEN1_PLAKH  (B3L014), FEN1_PLAVS  (A5KAL1), FEN1_PLAYO  (Q7RME3), 
FEN1_POLPA  (D3BN56), FEN1_PYRTR  (B2VTT3), FEN1_RAT    (Q5XIP6), 
FEN1_SALSA  (B9EMY6), FEN1_SCHJY  (B6JYI7), FEN1_SCHPO  (P39750), 
FEN1_SHEEP  (C8BKD0), FEN1_SORMK  (D1ZT73), FEN1_SOYBN  (C6TEX6), 
FEN1_TALSN  (B8MNF2), FEN1_THAPS  (B8C6S5), FEN1_TRIAD  (B3RVF0), 
FEN1_TRYB2  (Q57WW6), FEN1_TRYB9  (C9ZKW4), FEN1_TRYCC  (Q4DKQ5), 
FEN1_UNCRE  (C4JDR3), FEN1_USTMA  (Q4P1V1), FEN1_VANPO  (A7TJ59), 
FEN1_XENTR  (B1H158), FEN1_XIPMA  (Q5I4H3), FEN1_YARLI  (Q6C116), 
FEN1_YEAS1  (B3LQY3), FEN1_YEAS2  (C7GVJ8), FEN1_YEAS7  (A6ZZK4), 
FEN1_YEAS8  (C8ZC62), FEN1_YEAST  (P26793), FEN1_ZYGRC  (C5DZA9), 
FEN_AERPE   (Q9YFY5), FEN_ARCFU   (O29975), FEN_CALMQ   (A8M9L3), 
FEN_CENSY   (A0RU95), FEN_HALS3   (B0R5F5), FEN_HALSA   (Q9HQ27), 
FEN_HALWD   (Q18HK0), FEN_IGNH4   (A8AAC1), FEN_KORCO   (B1L6R9), 
FEN_METAC   (Q8TIY5), FEN_METB6   (A7IA59), FEN_METBF   (Q46D63), 
FEN_METBU   (Q12UT1), FEN_METHJ   (Q2FNC9), FEN_METKA   (Q8TXU4), 
FEN_METLZ   (A2SQC6), FEN_METMA   (Q8PYF6), FEN_METMJ   (A3CWV2), 
FEN_METPE   (B8GIA0), FEN_METS3   (A5UL52), FEN_METST   (Q2NFD4), 
FEN_METTH   (O27670), FEN_METTP   (A0B9M7), FEN_NANEQ   (P61942), 
FEN_NATPD   (Q3IPG8), FEN_NITMS   (A9A4B0), FEN_PICTO   (Q6L2I9), 
FEN_PYRAB   (Q9V0P9), FEN_PYRAE   (Q8ZYN2), FEN_PYRAR   (A4WNC4), 
FEN_PYRCJ   (A3MY15), FEN_PYRFU   (O93634), FEN_PYRHO   (O50123), 
FEN_PYRIL   (A1RSC7), FEN_PYRNV   (B1YC46), FEN_SULAC   (Q4JAN1), 
FEN_SULSO   (Q980U8), FEN_SULTO   (Q976H6), FEN_THEAC   (Q9HJD4), 
FEN_THEGJ   (C5A639), FEN_THEKO   (Q5JGN0), FEN_THEON   (B6YWX4), 
FEN_THEPD   (A1RWY2), FEN_THESM   (C6A1U9), FEN_THEVO   (Q97B98), 
RAD13_SCHPO (P28706), RAD2_YEAST  (P07276), UVH3_ARATH  (Q9ATY5)
» More

UniProtKB/Swiss-Prot
False negative sequences
26 sequences

EXO1_ARATH  (Q8L6Z7), FEN11_PARTE (A0CXT3), FEN12_PARTE (A0CYG2), 
FEN1B_DANRE (B0UXL7), FEN1_BABBO  (A7AX58), FEN1_ENCCU  (Q8SS91), 
FEN1_ENTBH  (B7XHS8), FEN1_GIAIC  (A8B672), FEN1_TETTS  (A4VDN2), 
FEN1_THEAN  (Q4UFP0), FEN1_THEPA  (Q4N3S6), FEN_HALMA   (Q5V5T7), 
FEN_HYPBU   (A2BMI0), FEN_META3   (A6UX46), FEN_METJA   (Q58839), 
FEN_STAMF   (A3DMG2), FEN_UNCMA   (Q0W6I0), GENL1_ARATH (Q9LPD2), 
GENL1_ORYSJ (Q64MA3), GENL2_ARATH (Q9M2Z3), GENL2_ORYSJ (Q8W5R1), 
GEN_DROME   (Q9VRJ0), GEN_DROPS   (Q29FC1), GEN_HUMAN   (Q17RS7), 
GEN_MOUSE   (Q8BMI4), VF369_IIV6  (Q91FF5)
» More


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission