Entry: PS00842

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General information about the entry

Entry name [info] XPG_2
Accession [info] PS00842
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); APR-2006 (DATA UPDATE); FEB-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00658

Name and characterization of the entry

Description [info] XPG protein signature 2.
Pattern [info]
[GSN]-[LIVM]-[PERD]-[FYSCV]-[LIVM]-x-A-P-x-E-A-[DE]-[PAS]-[QSE]-[CLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_03 which contains 542'782 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 122 in 122 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 42
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 74.39 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
122 sequences

DIN7_YEAST  (Q12086), ERCC5_HUMAN (P28715), ERCC5_MOUSE (P35689), 
ERCC5_XENLA (P14629), EXO1_ARATH  (Q8L6Z7), EXO1_DANRE  (Q803U7), 
EXO1_DROME  (Q24558), EXO1_HUMAN  (Q9UQ84), EXO1_MOUSE  (Q9QZ11), 
EXO1_SCHPO  (P53695), EXO1_XENLA  (Q9W6K2), EXO1_YEAST  (P39875), 
FEN11_LACBS (B0DSN9), FEN11_ORYSI (B8AW67), FEN11_ORYSJ (Q9SXQ6), 
FEN11_PHYPA (A9S0B8), FEN11_SORBI (C5YUK3), FEN12_LACBS (B0E412), 
FEN12_ORYSI (B8AMS4), FEN12_ORYSJ (Q75LI2), FEN12_PHYPA (A9U328), 
FEN12_SORBI (C5WU23), FEN1A_DANRE (Q6TNU4), FEN1_AEDAE  (Q178M1), 
FEN1_AJECH  (C6HQJ2), FEN1_AJECN  (A6QV55), FEN1_AJEDR  (C5GPA7), 
FEN1_AJEDS  (C5JVG7), FEN1_ANOGA  (Q7Q323), FEN1_ARTOC  (C5FZT5), 
FEN1_ASHGO  (Q75DS8), FEN1_ASPCL  (A1CJ75), FEN1_ASPFC  (B0XZ33), 
FEN1_ASPFN  (B8NV37), FEN1_ASPFU  (Q4WWJ1), FEN1_ASPNC  (A5ABU3), 
FEN1_ASPTN  (Q0CBS0), FEN1_BOVIN  (Q58DH8), FEN1_BRAFL  (C3ZBT0), 
FEN1_BRUMA  (A8QCH0), FEN1_CAEBR  (A8XL25), FEN1_CAEEL  (Q9N3T2), 
FEN1_CANAL  (Q5A6K8), FEN1_CANAW  (C4YLS2), FEN1_CANDC  (B9WLQ5), 
FEN1_CANGA  (Q6FM28), FEN1_CHICK  (Q5ZLN4), FEN1_CHLRE  (A8J2Z9), 
FEN1_CLAL4  (C4YBJ8), FEN1_COPC7  (A8NQC2), FEN1_COPCI  (Q76F73), 
FEN1_CRYNB  (P0CS61), FEN1_CRYNJ  (P0CS60), FEN1_CRYPI  (A3FPN7), 
FEN1_DEBHA  (Q6BLF4), FEN1_DROAN  (B3MDA3), FEN1_DROER  (B3NP61), 
FEN1_DROGR  (B4J6M4), FEN1_DROME  (Q7K7A9), FEN1_DROMO  (B4KNM1), 
FEN1_DROPE  (B4GIM3), FEN1_DROPS  (B5DUR8), FEN1_DROSE  (B4HTA1), 
FEN1_DROSI  (B4QIG6), FEN1_DROVI  (B4LM90), FEN1_DROWI  (B4MR84), 
FEN1_DROYA  (B4P5U9), FEN1_EMENI  (Q5B9L6), FEN1_GLOMM  (D3TQJ5), 
FEN1_HUMAN  (P39748), FEN1_KLULA  (Q6CLH4), FEN1_LACTC  (C5DGG4), 
FEN1_LEIBR  (A4HFE4), FEN1_LEIIN  (A4I2L4), FEN1_LEIMA  (Q4FYU7), 
FEN1_LODEL  (A5E121), FEN1_MACFA  (Q4R5U5), FEN1_MAGO7  (A4QS18), 
FEN1_MAIZE  (B4FHY0), FEN1_MONBE  (A9VB27), FEN1_MOUSE  (P39749), 
FEN1_NAEGR  (D2V434), FEN1_NECH7  (C7Z125), FEN1_NEMVE  (A7RRJ0), 
FEN1_NEOFI  (A1D8A4), FEN1_NEUCR  (A7UW97), FEN1_OSMMO  (C1BM18), 
FEN1_PENCW  (B6HEM2), FEN1_PENMQ  (B6QT52), FEN1_PHANO  (Q0UZR3), 
FEN1_PICGU  (A5DCF5), FEN1_PICPG  (C4QZ20), FEN1_PICST  (A3M056), 
FEN1_PLAKH  (B3L014), FEN1_PLAVS  (A5KAL1), FEN1_PYRTR  (B2VTT3), 
FEN1_RAT    (Q5XIP6), FEN1_SALSA  (B9EMY6), FEN1_SCHJY  (B6JYI7), 
FEN1_SCHPO  (P39750), FEN1_SHEEP  (C8BKD0), FEN1_SORMK  (D1ZT73), 
FEN1_SOYBN  (C6TEX6), FEN1_TALSN  (B8MNF2), FEN1_TETTS  (A4VDN2), 
FEN1_TRIAD  (B3RVF0), FEN1_TRYB2  (Q57WW6), FEN1_TRYB9  (C9ZKW4), 
FEN1_TRYCC  (Q4DKQ5), FEN1_UNCRE  (C4JDR3), FEN1_USTMA  (Q4P1V1), 
FEN1_VANPO  (A7TJ59), FEN1_XIPMA  (Q5I4H3), FEN1_YEAS1  (B3LQY3), 
FEN1_YEAS2  (C7GVJ8), FEN1_YEAS7  (A6ZZK4), FEN1_YEAS8  (C8ZC62), 
FEN1_YEAST  (P26793), FEN1_ZYGRC  (C5DZA9), RAD13_SCHPO (P28706), 
RAD2_YEAST  (P07276), UVH3_ARATH  (Q9ATY5)
» More

UniProtKB/Swiss-Prot
False negative sequences
42 sequences

EXO1_ORYSJ  (Q60GC1), FEN11_PARTE (A0CXT3), FEN12_PARTE (A0CYG2), 
FEN1A_XENLA (P70040), FEN1B_DANRE (B0UXL7), FEN1B_XENLA (P70054), 
FEN1_ANOFI  (C3KJE6), FEN1_ARATH  (O65251), FEN1_BABBO  (A7AX58), 
FEN1_CANTT  (C5M2X8), FEN1_CRYMR  (B6AFP1), FEN1_DICDI  (Q54NU0), 
FEN1_ENCCU  (Q8SS91), FEN1_ENTBH  (B7XHS8), FEN1_ENTDS  (B0EN90), 
FEN1_ENTHI  (C4M6G8), FEN1_GIAIC  (A8B672), FEN1_MICSR  (C1E3X9), 
FEN1_OSTLU  (A4S1G4), FEN1_OSTTA  (Q013G9), FEN1_PHATC  (B7G7Y7), 
FEN1_PHYIT  (D0MY34), FEN1_PLABA  (Q4Z015), FEN1_PLACH  (Q4XXP8), 
FEN1_PLAF7  (Q7K734), FEN1_PLAFA  (Q9GZ01), FEN1_PLAYO  (Q7RME3), 
FEN1_POLPA  (D3BN56), FEN1_THAPS  (B8C6S5), FEN1_THEAN  (Q4UFP0), 
FEN1_THEPA  (Q4N3S6), FEN1_XENTR  (B1H158), FEN1_YARLI  (Q6C116), 
GENL1_ARATH (Q9LPD2), GENL1_ORYSJ (Q64MA3), GENL2_ARATH (Q9M2Z3), 
GENL2_ORYSJ (Q8W5R1), GEN_DROME   (Q9VRJ0), GEN_DROPS   (Q29FC1), 
GEN_HUMAN   (Q17RS7), GEN_MOUSE   (Q8BMI4), VF369_IIV6  (Q91FF5)
» More

PDB
[Detailed view]
7 PDB

1UL1; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB

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