To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00842

General information about the entry

Entry name [info] XPG_2
Accession [info] PS00842
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED; 01-APR-2006 DATA UPDATE; 25-OCT-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00658

Name and characterization of the entry

Description [info] XPG protein signature 2.
Pattern [info]
[GSN]-[LIVM]-[PERD]-[FYSCV]-[LIVM]-x-A-P-x-E-A-[DE]-[PAS]-[QSE]-[CLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_10 which contains 556'006 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 122 in 122 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 42
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 74.39 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
122 sequences

DIN7_YEAST  (Q12086    ), ERCC5_HUMAN (P28715    ), ERCC5_MOUSE (P35689    ), 
ERCC5_XENLA (P14629    ), EXO1_ARATH  (Q8L6Z7    ), EXO1_DANRE  (Q803U7    ), 
EXO1_DROME  (Q24558    ), EXO1_HUMAN  (Q9UQ84    ), EXO1_MOUSE  (Q9QZ11    ), 
EXO1_SCHPO  (P53695    ), EXO1_XENLA  (Q9W6K2    ), EXO1_YEAST  (P39875    ), 
FEN11_LACBS (B0DSN9    ), FEN11_ORYSI (B8AW67    ), FEN11_ORYSJ (Q9SXQ6    ), 
FEN11_PHYPA (A9S0B8    ), FEN11_SORBI (C5YUK3    ), FEN12_LACBS (B0E412    ), 
FEN12_ORYSI (B8AMS4    ), FEN12_ORYSJ (Q75LI2    ), FEN12_PHYPA (A9U328    ), 
FEN12_SORBI (C5WU23    ), FEN1A_DANRE (Q6TNU4    ), FEN1_AEDAE  (Q178M1    ), 
FEN1_AJECH  (C6HQJ2    ), FEN1_AJECN  (A6QV55    ), FEN1_AJEDR  (C5GPA7    ), 
FEN1_ANOGA  (Q7Q323    ), FEN1_ARTOC  (C5FZT5    ), FEN1_ASHGO  (Q75DS8    ), 
FEN1_ASPCL  (A1CJ75    ), FEN1_ASPFC  (B0XZ33    ), FEN1_ASPFN  (B8NV37    ), 
FEN1_ASPFU  (Q4WWJ1    ), FEN1_ASPNC  (A5ABU3    ), FEN1_ASPTN  (Q0CBS0    ), 
FEN1_BLAGS  (C5JVG7    ), FEN1_BOVIN  (Q58DH8    ), FEN1_BRAFL  (C3ZBT0    ), 
FEN1_BRUMA  (A8QCH0    ), FEN1_CAEBR  (A8XL25    ), FEN1_CAEEL  (Q9N3T2    ), 
FEN1_CANAL  (Q5A6K8    ), FEN1_CANAW  (C4YLS2    ), FEN1_CANDC  (B9WLQ5    ), 
FEN1_CANGA  (Q6FM28    ), FEN1_CHICK  (Q5ZLN4    ), FEN1_CHLRE  (A8J2Z9    ), 
FEN1_CLAL4  (C4YBJ8    ), FEN1_COPC7  (A8NQC2    ), FEN1_COPCI  (Q76F73    ), 
FEN1_CRYNB  (P0CS61    ), FEN1_CRYNJ  (P0CS60    ), FEN1_CRYPI  (A3FPN7    ), 
FEN1_DEBHA  (Q6BLF4    ), FEN1_DROAN  (B3MDA3    ), FEN1_DROER  (B3NP61    ), 
FEN1_DROGR  (B4J6M4    ), FEN1_DROME  (Q7K7A9    ), FEN1_DROMO  (B4KNM1    ), 
FEN1_DROPE  (B4GIM3    ), FEN1_DROPS  (B5DUR8    ), FEN1_DROSE  (B4HTA1    ), 
FEN1_DROSI  (B4QIG6    ), FEN1_DROVI  (B4LM90    ), FEN1_DROWI  (B4MR84    ), 
FEN1_DROYA  (B4P5U9    ), FEN1_EMENI  (Q5B9L6    ), FEN1_GLOMM  (D3TQJ5    ), 
FEN1_HUMAN  (P39748    ), FEN1_KLULA  (Q6CLH4    ), FEN1_KOMPG  (C4QZ20    ), 
FEN1_LACTC  (C5DGG4    ), FEN1_LEIBR  (A4HFE4    ), FEN1_LEIIN  (A4I2L4    ), 
FEN1_LEIMA  (Q4FYU7    ), FEN1_LODEL  (A5E121    ), FEN1_MACFA  (Q4R5U5    ), 
FEN1_MAGO7  (A4QS18    ), FEN1_MAIZE  (B4FHY0    ), FEN1_MONBE  (A9VB27    ), 
FEN1_MOUSE  (P39749    ), FEN1_NAEGR  (D2V434    ), FEN1_NECH7  (C7Z125    ), 
FEN1_NEMVE  (A7RRJ0    ), FEN1_NEOFI  (A1D8A4    ), FEN1_NEUCR  (A7UW97    ), 
FEN1_OSMMO  (C1BM18    ), FEN1_PENRW  (B6HEM2    ), FEN1_PHANO  (Q0UZR3    ), 
FEN1_PICGU  (A5DCF5    ), FEN1_PICST  (A3M056    ), FEN1_PLAKH  (B3L014    ), 
FEN1_PLAVS  (A5KAL1    ), FEN1_PYRTR  (B2VTT3    ), FEN1_RAT    (Q5XIP6    ), 
FEN1_SALSA  (B9EMY6    ), FEN1_SCHJY  (B6JYI7    ), FEN1_SCHPO  (P39750    ), 
FEN1_SHEEP  (C8BKD0    ), FEN1_SORMK  (D1ZT73    ), FEN1_SOYBN  (C6TEX6    ), 
FEN1_TALMQ  (B6QT52    ), FEN1_TALSN  (B8MNF2    ), FEN1_TETTS  (A4VDN2    ), 
FEN1_TRIAD  (B3RVF0    ), FEN1_TRYB2  (Q57WW6    ), FEN1_TRYB9  (C9ZKW4    ), 
FEN1_TRYCC  (Q4DKQ5    ), FEN1_UNCRE  (C4JDR3    ), FEN1_USTMA  (Q4P1V1    ), 
FEN1_VANPO  (A7TJ59    ), FEN1_XIPMA  (Q5I4H3    ), FEN1_YEAS1  (B3LQY3    ), 
FEN1_YEAS2  (C7GVJ8    ), FEN1_YEAS7  (A6ZZK4    ), FEN1_YEAS8  (C8ZC62    ), 
FEN1_YEAST  (P26793    ), FEN1_ZYGRC  (C5DZA9    ), RAD13_SCHPO (P28706    ), 
RAD2_YEAST  (P07276    ), UVH3_ARATH  (Q9ATY5    )
» more

UniProtKB/Swiss-Prot
False negative sequences
42 sequences

EXO1_ORYSJ  (Q60GC1    ), FEN11_PARTE (A0CXT3    ), FEN12_PARTE (A0CYG2    ), 
FEN1A_XENLA (P70040    ), FEN1B_DANRE (B0UXL7    ), FEN1B_XENLA (P70054    ), 
FEN1_ANOFI  (C3KJE6    ), FEN1_ARATH  (O65251    ), FEN1_BABBO  (A7AX58    ), 
FEN1_CANTT  (C5M2X8    ), FEN1_CRYMR  (B6AFP1    ), FEN1_DICDI  (Q54NU0    ), 
FEN1_ENCCU  (Q8SS91    ), FEN1_ENTBH  (B7XHS8    ), FEN1_ENTDS  (B0EN90    ), 
FEN1_ENTHI  (C4M6G8    ), FEN1_GIAIC  (A8B672    ), FEN1_MICCC  (C1E3X9    ), 
FEN1_OSTLU  (A4S1G4    ), FEN1_OSTTA  (Q013G9    ), FEN1_PHATC  (B7G7Y7    ), 
FEN1_PHYIT  (D0MY34    ), FEN1_PLABA  (Q4Z015    ), FEN1_PLACH  (Q4XXP8    ), 
FEN1_PLAF7  (Q7K734    ), FEN1_PLAFA  (Q9GZ01    ), FEN1_PLAYO  (Q7RME3    ), 
FEN1_POLPP  (D3BN56    ), FEN1_THAPS  (B8C6S5    ), FEN1_THEAN  (Q4UFP0    ), 
FEN1_THEPA  (Q4N3S6    ), FEN1_XENTR  (B1H158    ), FEN1_YARLI  (Q6C116    ), 
GENL1_ARATH (Q9LPD2    ), GENL1_ORYSJ (Q64MA3    ), GENL2_ARATH (Q9M2Z3    ), 
GENL2_ORYSJ (Q8W5R1    ), GEN_DROME   (Q9VRJ0    ), GEN_DROPS   (Q29FC1    ), 
GEN_HUMAN   (Q17RS7    ), GEN_MOUSE   (Q8BMI4    ), VF369_IIV6  (Q91FF5    )
» more

PDB
[Detailed view]
12 PDB

1UL1; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB; 4Q0R; 4Q0W; 4Q0Z; 4Q10; 5FV7

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission