Entry: PS00842

General information about the entry

Entry name [info] XPG_2
Accession [info] PS00842
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); APR-2006 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00658

Name and characterization of the entry

Description [info] XPG protein signature 2.
Pattern [info]
[GSN]-[LIVM]-[PERD]-[FYSCV]-[LIVM]-x-A-P-x-E-A-[DE]-[PAS]-[QSE]-[CLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 122 in 122 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 42
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 74.39 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
122 sequences

DIN7_YEAST  (Q12086    ), ERCC5_HUMAN (P28715    ), ERCC5_MOUSE (P35689    ), 
ERCC5_XENLA (P14629    ), EXO1_ARATH  (Q8L6Z7    ), EXO1_DANRE  (Q803U7    ), 
EXO1_DROME  (Q24558    ), EXO1_HUMAN  (Q9UQ84    ), EXO1_MOUSE  (Q9QZ11    ), 
EXO1_SCHPO  (P53695    ), EXO1_XENLA  (Q9W6K2    ), EXO1_YEAST  (P39875    ), 
FEN11_LACBS (B0DSN9    ), FEN11_ORYSI (B8AW67    ), FEN11_ORYSJ (Q9SXQ6    ), 
FEN11_PHYPA (A9S0B8    ), FEN11_SORBI (C5YUK3    ), FEN12_LACBS (B0E412    ), 
FEN12_ORYSI (B8AMS4    ), FEN12_ORYSJ (Q75LI2    ), FEN12_PHYPA (A9U328    ), 
FEN12_SORBI (C5WU23    ), FEN1A_DANRE (Q6TNU4    ), FEN1_AEDAE  (Q178M1    ), 
FEN1_AJECH  (C6HQJ2    ), FEN1_AJECN  (A6QV55    ), FEN1_AJEDR  (C5GPA7    ), 
FEN1_AJEDS  (C5JVG7    ), FEN1_ANOGA  (Q7Q323    ), FEN1_ARTOC  (C5FZT5    ), 
FEN1_ASHGO  (Q75DS8    ), FEN1_ASPCL  (A1CJ75    ), FEN1_ASPFC  (B0XZ33    ), 
FEN1_ASPFN  (B8NV37    ), FEN1_ASPFU  (Q4WWJ1    ), FEN1_ASPNC  (A5ABU3    ), 
FEN1_ASPTN  (Q0CBS0    ), FEN1_BOVIN  (Q58DH8    ), FEN1_BRAFL  (C3ZBT0    ), 
FEN1_BRUMA  (A8QCH0    ), FEN1_CAEBR  (A8XL25    ), FEN1_CAEEL  (Q9N3T2    ), 
FEN1_CANAL  (Q5A6K8    ), FEN1_CANAW  (C4YLS2    ), FEN1_CANDC  (B9WLQ5    ), 
FEN1_CANGA  (Q6FM28    ), FEN1_CHICK  (Q5ZLN4    ), FEN1_CHLRE  (A8J2Z9    ), 
FEN1_CLAL4  (C4YBJ8    ), FEN1_COPC7  (A8NQC2    ), FEN1_COPCI  (Q76F73    ), 
FEN1_CRYNB  (P0CS61    ), FEN1_CRYNJ  (P0CS60    ), FEN1_CRYPI  (A3FPN7    ), 
FEN1_DEBHA  (Q6BLF4    ), FEN1_DROAN  (B3MDA3    ), FEN1_DROER  (B3NP61    ), 
FEN1_DROGR  (B4J6M4    ), FEN1_DROME  (Q7K7A9    ), FEN1_DROMO  (B4KNM1    ), 
FEN1_DROPE  (B4GIM3    ), FEN1_DROPS  (B5DUR8    ), FEN1_DROSE  (B4HTA1    ), 
FEN1_DROSI  (B4QIG6    ), FEN1_DROVI  (B4LM90    ), FEN1_DROWI  (B4MR84    ), 
FEN1_DROYA  (B4P5U9    ), FEN1_EMENI  (Q5B9L6    ), FEN1_GLOMM  (D3TQJ5    ), 
FEN1_HUMAN  (P39748    ), FEN1_KLULA  (Q6CLH4    ), FEN1_LACTC  (C5DGG4    ), 
FEN1_LEIBR  (A4HFE4    ), FEN1_LEIIN  (A4I2L4    ), FEN1_LEIMA  (Q4FYU7    ), 
FEN1_LODEL  (A5E121    ), FEN1_MACFA  (Q4R5U5    ), FEN1_MAGO7  (A4QS18    ), 
FEN1_MAIZE  (B4FHY0    ), FEN1_MONBE  (A9VB27    ), FEN1_MOUSE  (P39749    ), 
FEN1_NAEGR  (D2V434    ), FEN1_NECH7  (C7Z125    ), FEN1_NEMVE  (A7RRJ0    ), 
FEN1_NEOFI  (A1D8A4    ), FEN1_NEUCR  (A7UW97    ), FEN1_OSMMO  (C1BM18    ), 
FEN1_PENRW  (B6HEM2    ), FEN1_PHANO  (Q0UZR3    ), FEN1_PICGU  (A5DCF5    ), 
FEN1_PICPG  (C4QZ20    ), FEN1_PICST  (A3M056    ), FEN1_PLAKH  (B3L014    ), 
FEN1_PLAVS  (A5KAL1    ), FEN1_PYRTR  (B2VTT3    ), FEN1_RAT    (Q5XIP6    ), 
FEN1_SALSA  (B9EMY6    ), FEN1_SCHJY  (B6JYI7    ), FEN1_SCHPO  (P39750    ), 
FEN1_SHEEP  (C8BKD0    ), FEN1_SORMK  (D1ZT73    ), FEN1_SOYBN  (C6TEX6    ), 
FEN1_TALMQ  (B6QT52    ), FEN1_TALSN  (B8MNF2    ), FEN1_TETTS  (A4VDN2    ), 
FEN1_TRIAD  (B3RVF0    ), FEN1_TRYB2  (Q57WW6    ), FEN1_TRYB9  (C9ZKW4    ), 
FEN1_TRYCC  (Q4DKQ5    ), FEN1_UNCRE  (C4JDR3    ), FEN1_USTMA  (Q4P1V1    ), 
FEN1_VANPO  (A7TJ59    ), FEN1_XIPMA  (Q5I4H3    ), FEN1_YEAS1  (B3LQY3    ), 
FEN1_YEAS2  (C7GVJ8    ), FEN1_YEAS7  (A6ZZK4    ), FEN1_YEAS8  (C8ZC62    ), 
FEN1_YEAST  (P26793    ), FEN1_ZYGRC  (C5DZA9    ), RAD13_SCHPO (P28706    ), 
RAD2_YEAST  (P07276    ), UVH3_ARATH  (Q9ATY5    )
» more

UniProtKB/Swiss-Prot
False negative sequences
42 sequences

EXO1_ORYSJ  (Q60GC1    ), FEN11_PARTE (A0CXT3    ), FEN12_PARTE (A0CYG2    ), 
FEN1A_XENLA (P70040    ), FEN1B_DANRE (B0UXL7    ), FEN1B_XENLA (P70054    ), 
FEN1_ANOFI  (C3KJE6    ), FEN1_ARATH  (O65251    ), FEN1_BABBO  (A7AX58    ), 
FEN1_CANTT  (C5M2X8    ), FEN1_CRYMR  (B6AFP1    ), FEN1_DICDI  (Q54NU0    ), 
FEN1_ENCCU  (Q8SS91    ), FEN1_ENTBH  (B7XHS8    ), FEN1_ENTDS  (B0EN90    ), 
FEN1_ENTHI  (C4M6G8    ), FEN1_GIAIC  (A8B672    ), FEN1_MICCC  (C1E3X9    ), 
FEN1_OSTLU  (A4S1G4    ), FEN1_OSTTA  (Q013G9    ), FEN1_PHATC  (B7G7Y7    ), 
FEN1_PHYIT  (D0MY34    ), FEN1_PLABA  (Q4Z015    ), FEN1_PLACH  (Q4XXP8    ), 
FEN1_PLAF7  (Q7K734    ), FEN1_PLAFA  (Q9GZ01    ), FEN1_PLAYO  (Q7RME3    ), 
FEN1_POLPA  (D3BN56    ), FEN1_THAPS  (B8C6S5    ), FEN1_THEAN  (Q4UFP0    ), 
FEN1_THEPA  (Q4N3S6    ), FEN1_XENTR  (B1H158    ), FEN1_YARLI  (Q6C116    ), 
GENL1_ARATH (Q9LPD2    ), GENL1_ORYSJ (Q64MA3    ), GENL2_ARATH (Q9M2Z3    ), 
GENL2_ORYSJ (Q8W5R1    ), GEN_DROME   (Q9VRJ0    ), GEN_DROPS   (Q29FC1    ), 
GEN_HUMAN   (Q17RS7    ), GEN_MOUSE   (Q8BMI4    ), VF369_IIV6  (Q91FF5    )
» more

PDB
[Detailed view]
11 PDB

1UL1; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB; 4Q0R; 4Q0W; 4Q0Z; 4Q10

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