Entry: PS00842

General information about the entry
Entry name XPG_2
Accession number PS00842
Entry type PATTERN
Date OCT-1993 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00658
Name and characterization of the entry
DescriptionXPG protein signature 2.
Pattern [GSN]-[LIVM]-[PERD]-[FYSCV]-[LIVM]-x-A-P-x-E-A-[DE]-[PAS]-[QSE]-[CLM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 122 hits in 122 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 122 hits in 122 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 42
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 74.39 %
Comments
  • Taxonomic range: Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DIN7_YEAST  (Q12086), ERCC5_HUMAN (P28715), ERCC5_MOUSE (P35689), 
ERCC5_XENLA (P14629), EXO1_ARATH  (Q8L6Z7), EXO1_DANRE  (Q803U7), 
EXO1_DROME  (Q24558), EXO1_HUMAN  (Q9UQ84), EXO1_MOUSE  (Q9QZ11), 
EXO1_SCHPO  (P53695), EXO1_XENLA  (Q9W6K2), EXO1_YEAST  (P39875), 
FEN11_LACBS (B0DSN9), FEN11_ORYSI (B8AW67), FEN11_ORYSJ (Q9SXQ6), 
FEN11_PHYPA (A9S0B8), FEN11_SORBI (C5YUK3), FEN12_LACBS (B0E412), 
FEN12_ORYSI (B8AMS4), FEN12_ORYSJ (Q75LI2), FEN12_PHYPA (A9U328), 
FEN12_SORBI (C5WU23), FEN1A_DANRE (Q6TNU4), FEN1_AEDAE  (Q178M1), 
FEN1_AJECH  (C6HQJ2), FEN1_AJECN  (A6QV55), FEN1_AJEDR  (C5GPA7), 
FEN1_AJEDS  (C5JVG7), FEN1_ANOGA  (Q7Q323), FEN1_ARTOC  (C5FZT5), 
FEN1_ASHGO  (Q75DS8), FEN1_ASPCL  (A1CJ75), FEN1_ASPFC  (B0XZ33), 
FEN1_ASPFN  (B8NV37), FEN1_ASPFU  (Q4WWJ1), FEN1_ASPNC  (A5ABU3), 
FEN1_ASPTN  (Q0CBS0), FEN1_BOVIN  (Q58DH8), FEN1_BRAFL  (C3ZBT0), 
FEN1_BRUMA  (A8QCH0), FEN1_CAEBR  (A8XL25), FEN1_CAEEL  (Q9N3T2), 
FEN1_CANAL  (Q5A6K8), FEN1_CANAW  (C4YLS2), FEN1_CANDC  (B9WLQ5), 
FEN1_CANGA  (Q6FM28), FEN1_CHICK  (Q5ZLN4), FEN1_CHLRE  (A8J2Z9), 
FEN1_CLAL4  (C4YBJ8), FEN1_COPC7  (A8NQC2), FEN1_COPCI  (Q76F73), 
FEN1_CRYNB  (P0CS61), FEN1_CRYNJ  (P0CS60), FEN1_CRYPI  (A3FPN7), 
FEN1_DEBHA  (Q6BLF4), FEN1_DROAN  (B3MDA3), FEN1_DROER  (B3NP61), 
FEN1_DROGR  (B4J6M4), FEN1_DROME  (Q7K7A9), FEN1_DROMO  (B4KNM1), 
FEN1_DROPE  (B4GIM3), FEN1_DROPS  (B5DUR8), FEN1_DROSE  (B4HTA1), 
FEN1_DROSI  (B4QIG6), FEN1_DROVI  (B4LM90), FEN1_DROWI  (B4MR84), 
FEN1_DROYA  (B4P5U9), FEN1_EMENI  (Q5B9L6), FEN1_GLOMM  (D3TQJ5), 
FEN1_HUMAN  (P39748), FEN1_KLULA  (Q6CLH4), FEN1_LACTC  (C5DGG4), 
FEN1_LEIBR  (A4HFE4), FEN1_LEIIN  (A4I2L4), FEN1_LEIMA  (Q4FYU7), 
FEN1_LODEL  (A5E121), FEN1_MACFA  (Q4R5U5), FEN1_MAGO7  (A4QS18), 
FEN1_MAIZE  (B4FHY0), FEN1_MONBE  (A9VB27), FEN1_MOUSE  (P39749), 
FEN1_NAEGR  (D2V434), FEN1_NECH7  (C7Z125), FEN1_NEMVE  (A7RRJ0), 
FEN1_NEOFI  (A1D8A4), FEN1_NEUCR  (A7UW97), FEN1_OSMMO  (C1BM18), 
FEN1_PENCW  (B6HEM2), FEN1_PENMQ  (B6QT52), FEN1_PHANO  (Q0UZR3), 
FEN1_PICGU  (A5DCF5), FEN1_PICPG  (C4QZ20), FEN1_PICST  (A3M056), 
FEN1_PLAKH  (B3L014), FEN1_PLAVS  (A5KAL1), FEN1_PYRTR  (B2VTT3), 
FEN1_RAT    (Q5XIP6), FEN1_SALSA  (B9EMY6), FEN1_SCHJY  (B6JYI7), 
FEN1_SCHPO  (P39750), FEN1_SHEEP  (C8BKD0), FEN1_SORMK  (D1ZT73), 
FEN1_SOYBN  (C6TEX6), FEN1_TALSN  (B8MNF2), FEN1_TETTS  (A4VDN2), 
FEN1_TRIAD  (B3RVF0), FEN1_TRYB2  (Q57WW6), FEN1_TRYB9  (C9ZKW4), 
FEN1_TRYCC  (Q4DKQ5), FEN1_UNCRE  (C4JDR3), FEN1_USTMA  (Q4P1V1), 
FEN1_VANPO  (A7TJ59), FEN1_XIPMA  (Q5I4H3), FEN1_YEAS1  (B3LQY3), 
FEN1_YEAS2  (C7GVJ8), FEN1_YEAS7  (A6ZZK4), FEN1_YEAS8  (C8ZC62), 
FEN1_YEAST  (P26793), FEN1_ZYGRC  (C5DZA9), RAD13_SCHPO (P28706), 
RAD2_YEAST  (P07276), UVH3_ARATH  (Q9ATY5)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
EXO1_ORYSJ  (Q60GC1), FEN11_PARTE (A0CXT3), FEN12_PARTE (A0CYG2), 
FEN1A_XENLA (P70040), FEN1B_DANRE (B0UXL7), FEN1B_XENLA (P70054), 
FEN1_ANOFI  (C3KJE6), FEN1_ARATH  (O65251), FEN1_BABBO  (A7AX58), 
FEN1_CANTT  (C5M2X8), FEN1_CRYMR  (B6AFP1), FEN1_DICDI  (Q54NU0), 
FEN1_ENCCU  (Q8SS91), FEN1_ENTBH  (B7XHS8), FEN1_ENTDS  (B0EN90), 
FEN1_ENTHI  (C4M6G8), FEN1_GIAIC  (A8B672), FEN1_MICSR  (C1E3X9), 
FEN1_OSTLU  (A4S1G4), FEN1_OSTTA  (Q013G9), FEN1_PHATC  (B7G7Y7), 
FEN1_PHYIT  (D0MY34), FEN1_PLABA  (Q4Z015), FEN1_PLACH  (Q4XXP8), 
FEN1_PLAF7  (Q7K734), FEN1_PLAFA  (Q9GZ01), FEN1_PLAYO  (Q7RME3), 
FEN1_POLPA  (D3BN56), FEN1_THAPS  (B8C6S5), FEN1_THEAN  (Q4UFP0), 
FEN1_THEPA  (Q4N3S6), FEN1_XENTR  (B1H158), FEN1_YARLI  (Q6C116), 
GENL1_ARATH (Q9LPD2), GENL1_ORYSJ (Q64MA3), GENL2_ARATH (Q9M2Z3), 
GENL2_ORYSJ (Q8W5R1), GEN_DROME   (Q9VRJ0), GEN_DROPS   (Q29FC1), 
GEN_HUMAN   (Q17RS7), GEN_MOUSE   (Q8BMI4), VF369_IIV6  (Q91FF5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1UL1; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or