Entry: PS00845

General information about the entry
Entry name CAP_GLY_1
Accession number PS00845
Entry type PATTERN
Date OCT-1993 (CREATED); APR-2006 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00660
Name and characterization of the entry
DescriptionCAP-Gly domain signature.
Pattern [GD]-x(0,10)-[FYWA]-x(0,1)-G-[LIVM]-x(0,2)-[LIVMFYD]-x(0,7)-G-[KN]-[NHW]- x(0,1)-G-[STARCV]-x(0,2)-[GD]-x(0,2)-[LY]-[FC].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 63 hits in 50 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 62 hits in 49 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 98.41 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ALP11_SCHPO (Q10235), BIK1_YEAST  (P11709), CE350_HUMAN (Q5VT06), 
CL190_DROME (Q9VJE5), CLIP1_CHICK (O42184), CLIP1_HUMAN (P30622), 
CLIP1_MOUSE (Q922J3), CLIP2_HUMAN (Q9UDT6), CLIP2_MOUSE (Q9Z0H8), 
CLIP2_RAT   (O55156), CLIP3_HUMAN (Q96DZ5), CLIP3_MOUSE (B9EHT4), 
CLIP3_PONAB (Q5R686), CLIP3_XENLA (Q5U243), CLIP4_HUMAN (Q8N3C7), 
CLIP4_MOUSE (Q8CI96), CLIP4_RAT   (Q66HD5), CYLD_BOVIN  (Q1RMU2), 
CYLD_HUMAN  (Q9NQC7), CYLD_MOUSE  (Q80TQ2), CYLD_PONAB  (Q5RED8), 
CYLD_RAT    (Q66H62), DCTN1_CHICK (P35458), DCTN1_DROME (P13496), 
DCTN1_HUMAN (Q14203), DCTN1_MOUSE (O08788), DCTN1_RAT   (P28023), 
DCTN1_XENLA (Q6PCJ1), DYNA_NEUCR  (Q01397), KI13B_HUMAN (Q9NQT8), 
NIP80_YEAST (P33420), PAC2_YEAST  (P39937), SSM4_SCHPO  (O42667), 
TBCB_BOVIN  (Q5E951), TBCB_CAEEL  (Q20728), TBCB_DICDI  (Q54Z01), 
TBCB_HUMAN  (Q99426), TBCB_MOUSE  (Q9D1E6), TBCB_YEAST  (P53904), 
TBCE_BOVIN  (Q32KS0), TBCE_DANRE  (Q5U378), TBCE_DICDI  (Q55CN0), 
TBCE_HUMAN  (Q15813), TBCE_MOUSE  (Q8CIV8), TBCE_PONAB  (Q5RBD9), 
TBCE_RAT    (Q5FVQ9), TBCE_XENLA  (Q5U508), TIP1_SCHPO  (P79065), 
YM92_CAEEL  (P34531)
False positive hits (sequences which do not belong to the set under consideration):
YETA_BACSU  (O31530)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1LPL; 1TOV; 1TXQ; 1WHG; 1WHH; 1WHK; 1WHM; 2COW; 2COY; 2COZ; 2CP0; 2CP2; 2CP3; 2CP5; 2CP6; 2CP7; 2E3H; 2E3I; 2E4H; 2HKN; 2HKQ; 2HL3; 2HL5; 2HQH; 2QK0; 2Z0W; 3E2U; 3RDV; 3TQ7;

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