Entry: PS00846

General information about the entry
Entry name HTH_ARSR_1
Accession number PS00846
Entry type PATTERN
Date OCT-1993 (CREATED); NOV-1995 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00661
Name and characterization of the entry
DescriptionBacterial regulatory proteins, arsR family signature.
Pattern C-x(2)-D-[LIVM]-x(6)-[ST]-x(4)-S-[HYR]-[HQ].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 15 hits in 15 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 14 hits in 14 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 31
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 93.33 %
  • Recall (true hits / (true hits + false negatives)): 31.11 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria), Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ARSR1_ECOLX (P15905), ARSR2_ECOLX (P52144), ARSR_BACSU  (P45949), 
ARSR_ECOLI  (P37309), ARSR_STAAU  (P30338), ARSR_STAXY  (Q01256), 
CADC_BACPE  (P30339), CADC_LACLL  (P0A4U3), CADC_LISIN  (P0A4U2), 
CADC_LISMN  (Q56405), CADC_STAAU  (P20047), CADF_STAAU  (P37374), 
SMTB_SYNE7  (P30340), ZIAR_SYNY3  (Q55940)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ASER_BACSU  (P96677), B115_SSV1   (P0C7L5), BIGR_AGRT5  (Q8UAA8), 
BIGR_XYLFA  (Q9PFB1), BIGR_XYLFT  (Q87AD5), CMTR_MYCBO  (P67732), 
CMTR_MYCTU  (P67731), CZRA_BACSU  (O31844), HLYU_VIBCH  (P52695), 
HTHAR_MYCTU (O53478), KMTR_MYCTU  (O53838), MERR_STRLI  (P30346), 
NMTR_MYCTU  (O69711), NOLR_RHIML  (P28267), PAGR_BACAN  (O31178), 
SDPR_BACSU  (O32242), SMTB_MYCTU  (O05840), Y0081_MYCTU (O53626), 
Y1325_METJA (Q58721), Y1398_METJA (Q58793), Y1553_METJA (Q58948), 
Y1563_METJA (Q58958), Y229_METJA  (Q57682), Y361_METJA  (Q57807), 
Y774_METJA  (Q58184), YBZH_BACSU  (C0H3S9), YCEK_BACSU  (O34464), 
YCZG_BACSU  (O31480), YDFF_BACSU  (P96683), YGAV_ECOLI  (P77295), 
YUZN_BACSU  (C0H3Q8)
False positive hits (sequences which do not belong to the set under consideration):
CECR6_MOUSE (Q99MX7)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1R1T; 1R23; 1SMT; 1U2W; 3F72;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or