Due to scheduled maintenance work, this service may not be available on Monday January 22nd between 08.00 am and 9.00 am CEST.
To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00846

General information about the entry

Entry name [info] HTH_ARSR_1
Accession [info] PS00846
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED; 01-NOV-1995 DATA UPDATE; 20-DEC-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00661

Name and characterization of the entry

Description [info] Bacterial regulatory proteins, arsR family signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_12 which contains 556'388 sequence entries.

Total number of hits 15 in 15 different sequences
Number of true positive hits 14 in 14 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 36
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 93.33 %
Recall (true positives / (true positives + false negatives)) 28.00 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
14 sequences

ARSR1_ECOLX (P15905    ), ARSR2_ECOLX (P52144    ), ARSR_BACSU  (P45949    ), 
ARSR_ECOLI  (P37309    ), ARSR_STAAU  (P30338    ), ARSR_STAXY  (Q01256    ), 
CADC_BACPE  (P30339    ), CADC_LACLL  (P0A4U3    ), CADC_LISIN  (P0A4U2    ), 
CADC_LISMN  (Q56405    ), CADC_STAAU  (P20047    ), CADF_STAAU  (P37374    ), 
SMTB_SYNE7  (P30340    ), ZIAR_SYNY3  (Q55940    )
» more

False negative sequences
36 sequences

ARSR1_PSEPK (Q88LK1    ), ARSR2_PSEPK (Q88JD1    ), ASER_BACSU  (P96677    ), 
B115_SSV1   (P0C7L5    ), BIGR_AGRFC  (Q8UAA8    ), BIGR_XYLFA  (Q9PFB1    ), 
BIGR_XYLFT  (Q87AD5    ), CMTR_MYCBO  (P67732    ), CMTR_MYCTO  (P9WMI8    ), 
CMTR_MYCTU  (P9WMI9    ), CZRA_BACSU  (O31844    ), HLYU_VIBCH  (P52695    ), 
HTHAR_MYCTU (O53478    ), KMTR_MYCTU  (O53838    ), MERR_STRLI  (P30346    ), 
NMTR_MYCTU  (O69711    ), NOLR_RHIML  (P28267    ), PAGR_BACAN  (O31178    ), 
SDPR_BACSU  (O32242    ), SMTB_MYCTO  (P9WMI4    ), SMTB_MYCTU  (P9WMI5    ), 
Y0081_MYCTO (P9WMI6    ), Y0081_MYCTU (P9WMI7    ), Y1325_METJA (Q58721    ), 
Y1398_METJA (Q58793    ), Y1553_METJA (Q58948    ), Y1563_METJA (Q58958    ), 
Y229_METJA  (Q57682    ), Y361_METJA  (Q57807    ), Y774_METJA  (Q58184    ), 
YBZH_BACSU  (C0H3S9    ), YCEK_BACSU  (O34464    ), YCZG_BACSU  (O31480    ), 
YDFF_BACSU  (P96683    ), YGAV_ECOLI  (P77295    ), YUZN_BACSU  (C0H3Q8    )
» more

False positive sequences
1 sequence

T121B_MOUSE (Q99MX7    )

[Detailed view]

1R1T; 1R23; 1SMT; 1U2W; 3F72

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission