Entry: PS00853

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General information about the entry

Entry name [info] BETA_ELIM_LYASE
Accession [info] PS00853
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00667

Name and characterization of the entry

Description [info] Beta-eliminating lyases pyridoxal-phosphate attachment site.
Pattern [info]
[YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 59 in 59 different sequences
Number of true positive hits 59 in 59 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 9
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 86.76 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
59 sequences

BELY_TRIVA  (A2EYC4), TNAA1_SYMTH (P31014), TNAA2_SYMTH (P31015), 
TNAA_AERPE  (Q9YCI2), TNAA_CHRVO  (Q7NYV9), TNAA_CITK8  (A8AKE2), 
TNAA_CLOTE  (Q894M8), TNAA_ECO24  (A7ZTR3), TNAA_ECO27  (B7UMH5), 
TNAA_ECO45  (B7MGC9), TNAA_ECO55  (B7L853), TNAA_ECO57  (Q8XB34), 
TNAA_ECO5E  (B5YXB2), TNAA_ECO7I  (B7NR10), TNAA_ECO81  (B7N212), 
TNAA_ECO8A  (B7M560), TNAA_ECOBW  (C4ZYY6), TNAA_ECODH  (B1X9T7), 
TNAA_ECOHS  (A8A6H0), TNAA_ECOL5  (Q0TB00), TNAA_ECOL6  (Q8FBV2), 
TNAA_ECOLC  (B1IX30), TNAA_ECOLI  (P0A853), TNAA_ECOLU  (B7NF25), 
TNAA_ECOSE  (B6I3U1), TNAA_ECOSM  (B1LL35), TNAA_ENTAE  (Q59342), 
TNAA_ESCF3  (B7LK50), TNAA_HAEI8  (Q4QML4), TNAA_HAEIF  (O07674), 
TNAA_HALS3  (B0R7Q6), TNAA_HALSA  (Q9HMV2), TNAA_HISS1  (Q0I3R5), 
TNAA_HISS2  (B0UTZ3), TNAA_PASMU  (Q9CL27), TNAA_PHOLL  (Q7N8C9), 
TNAA_PROIN  (Q9ZNA8), TNAA_PROVU  (P28796), TNAA_RHOCA  (O30971), 
TNAA_SHIB3  (B2TUR7), TNAA_SHIF8  (Q0SYP7), TNAA_SHIFL  (P0A854), 
TNAA_THETN  (Q8R9K5), TNAA_VIBC3  (A5EYI0), TNAA_VIBCH  (Q9KN05), 
TNAA_VIBCM  (C3LUI5), TNAA_VIBPA  (Q87JQ6), TNAA_VIBVU  (Q8D5Q4), 
TNAA_VIBVY  (Q7MCR1), TNAA_YERE8  (A1JJH3), TPL_CITFR   (P31013), 
TPL_CITIN   (P31012), TPL_CLOTE   (Q897C2), TPL_ENTAG   (P31011), 
TPL_FUSNN   (Q8RHM6), TPL_NOSP7   (B2J908), TPL_PASMU   (Q9CMK9), 
TPL_SYMS1   (O08501), TPL_SYMTH   (Q08897)
» More

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

TNAA_AERHH  (A0KJP3), TNAA_AERS4  (A4SNA7), TNAA_DESVH  (Q729Z3), 
TNAA_DESVV  (A1VC86), TNAA_HYPNA  (Q0C406), TNAA_SALRD  (Q2S1V4), 
TNAA_SHESH  (A8G097), TPL_CLOSW   (D9R201), TPL_INTC7   (E6SFG5)
» More

PDB
[Detailed view]
13 PDB

1C7G; 1TPL; 2C44; 2EZ2; 2OQX; 2V0Y; 2V1P; 2VLF; 2VLH; 2YCN; 2YCP; 2YCT; 2YHK
» More

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