Entry: PS00853

General information about the entry
Entry name BETA_ELIM_LYASE
Accession number PS00853
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00667
Name and characterization of the entry
DescriptionBeta-eliminating lyases pyridoxal-phosphate attachment site.
Pattern [YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 59 hits in 59 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 59 hits in 59 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 9
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 86.76 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 9,pyridoxal_phosphate
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BELY_TRIVA  (A2EYC4), TNAA1_SYMTH (P31014), TNAA2_SYMTH (P31015), 
TNAA_AERPE  (Q9YCI2), TNAA_CHRVO  (Q7NYV9), TNAA_CITK8  (A8AKE2), 
TNAA_CLOTE  (Q894M8), TNAA_ECO24  (A7ZTR3), TNAA_ECO27  (B7UMH5), 
TNAA_ECO45  (B7MGC9), TNAA_ECO55  (B7L853), TNAA_ECO57  (Q8XB34), 
TNAA_ECO5E  (B5YXB2), TNAA_ECO7I  (B7NR10), TNAA_ECO81  (B7N212), 
TNAA_ECO8A  (B7M560), TNAA_ECOBW  (C4ZYY6), TNAA_ECODH  (B1X9T7), 
TNAA_ECOHS  (A8A6H0), TNAA_ECOL5  (Q0TB00), TNAA_ECOL6  (Q8FBV2), 
TNAA_ECOLC  (B1IX30), TNAA_ECOLI  (P0A853), TNAA_ECOLU  (B7NF25), 
TNAA_ECOSE  (B6I3U1), TNAA_ECOSM  (B1LL35), TNAA_ENTAE  (Q59342), 
TNAA_ESCF3  (B7LK50), TNAA_HAEI8  (Q4QML4), TNAA_HAEIF  (O07674), 
TNAA_HAES1  (Q0I3R5), TNAA_HAES2  (B0UTZ3), TNAA_HALS3  (B0R7Q6), 
TNAA_HALSA  (Q9HMV2), TNAA_PASMU  (Q9CL27), TNAA_PHOLL  (Q7N8C9), 
TNAA_PROIN  (Q9ZNA8), TNAA_PROVU  (P28796), TNAA_RHOCA  (O30971), 
TNAA_SHIB3  (B2TUR7), TNAA_SHIF8  (Q0SYP7), TNAA_SHIFL  (P0A854), 
TNAA_THETN  (Q8R9K5), TNAA_VIBC3  (A5EYI0), TNAA_VIBCH  (Q9KN05), 
TNAA_VIBCM  (C3LUI5), TNAA_VIBPA  (Q87JQ6), TNAA_VIBVU  (Q8D5Q4), 
TNAA_VIBVY  (Q7MCR1), TNAA_YERE8  (A1JJH3), TPL_CITFR   (P31013), 
TPL_CLOTE   (Q897C2), TPL_ENTAG   (P31011), TPL_ESCIN   (P31012), 
TPL_FUSNN   (Q8RHM6), TPL_NOSP7   (B2J908), TPL_PASMU   (Q9CMK9), 
TPL_SYMS1   (O08501), TPL_SYMTH   (Q08897)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TNAA_AERHH  (A0KJP3), TNAA_AERS4  (A4SNA7), TNAA_DESVH  (Q729Z3), 
TNAA_DESVV  (A1VC86), TNAA_HYPNA  (Q0C406), TNAA_SALRD  (Q2S1V4), 
TNAA_SHESH  (A8G097), TPL_CLOSW   (D9R201), TPL_INTC7   (E6SFG5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1C7G; 1TPL; 2C44; 2EZ2; 2OQX; 2V0Y; 2V1P; 2VLF; 2VLH; 2YCN; 2YCP; 2YCT; 2YHK;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or