Due to scheduled maintenance work, this service may not be available on Monday January 22nd between 08.00 am and 9.00 am CEST
To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00853

General information about the entry

Entry name [info] BETA_ELIM_LYASE
Accession [info] PS00853
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED; 01-DEC-2004 DATA UPDATE; 20-DEC-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00667

Name and characterization of the entry

Description [info] Beta-eliminating lyases pyridoxal-phosphate attachment site.
Pattern [info]
[YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_12 which contains 556'388 sequence entries.


Total number of hits 59 in 59 different sequences
Number of true positive hits 59 in 59 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 9
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 86.76 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
59 sequences

BELY_TRIVA  (A2EYC4    ), TNAA1_SYMTH (P31014    ), TNAA2_SYMTH (P31015    ), 
TNAA_AERPE  (Q9YCI2    ), TNAA_CALS4  (Q8R9K5    ), TNAA_CHRVO  (Q7NYV9    ), 
TNAA_CITK8  (A8AKE2    ), TNAA_CLOTE  (Q894M8    ), TNAA_ECO24  (A7ZTR3    ), 
TNAA_ECO27  (B7UMH5    ), TNAA_ECO45  (B7MGC9    ), TNAA_ECO55  (B7L853    ), 
TNAA_ECO57  (Q8XB34    ), TNAA_ECO5E  (B5YXB2    ), TNAA_ECO7I  (B7NR10    ), 
TNAA_ECO81  (B7N212    ), TNAA_ECO8A  (B7M560    ), TNAA_ECOBW  (C4ZYY6    ), 
TNAA_ECODH  (B1X9T7    ), TNAA_ECOHS  (A8A6H0    ), TNAA_ECOL5  (Q0TB00    ), 
TNAA_ECOL6  (Q8FBV2    ), TNAA_ECOLC  (B1IX30    ), TNAA_ECOLI  (P0A853    ), 
TNAA_ECOLU  (B7NF25    ), TNAA_ECOSE  (B6I3U1    ), TNAA_ECOSM  (B1LL35    ), 
TNAA_ESCF3  (B7LK50    ), TNAA_HAEI8  (Q4QML4    ), TNAA_HAEIF  (O07674    ), 
TNAA_HAES1  (Q0I3R5    ), TNAA_HALS3  (B0R7Q6    ), TNAA_HALSA  (Q9HMV2    ), 
TNAA_HISS2  (B0UTZ3    ), TNAA_KLEAE  (Q59342    ), TNAA_PASMU  (Q9CL27    ), 
TNAA_PHOLL  (Q7N8C9    ), TNAA_PROIN  (Q9ZNA8    ), TNAA_PROVU  (P28796    ), 
TNAA_RHOCA  (O30971    ), TNAA_SHIB3  (B2TUR7    ), TNAA_SHIF8  (Q0SYP7    ), 
TNAA_SHIFL  (P0A854    ), TNAA_VIBC3  (A5EYI0    ), TNAA_VIBCH  (Q9KN05    ), 
TNAA_VIBCM  (C3LUI5    ), TNAA_VIBPA  (Q87JQ6    ), TNAA_VIBVU  (Q8D5Q4    ), 
TNAA_VIBVY  (Q7MCR1    ), TNAA_YERE8  (A1JJH3    ), TPL_CITFR   (P31013    ), 
TPL_CITIN   (P31012    ), TPL_CLOTE   (Q897C2    ), TPL_ENTAG   (P31011    ), 
TPL_FUSNN   (Q8RHM6    ), TPL_NOSP7   (B2J908    ), TPL_PASMU   (Q9CMK9    ), 
TPL_SYMS1   (O08501    ), TPL_SYMTH   (Q08897    )
» more

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

TNAA_AERHH  (A0KJP3    ), TNAA_AERS4  (A4SNA7    ), TNAA_DESVH  (Q729Z3    ), 
TNAA_DESVV  (A1VC86    ), TNAA_HYPNA  (Q0C406    ), TNAA_SALRD  (Q2S1V4    ), 
TNAA_SHESH  (A8G097    ), TPL_CLOSW   (D9R201    ), TPL_INTC7   (E6SFG5    )
» more

PDB
[Detailed view]
16 PDB

1C7G; 1TPL; 2C44; 2EZ2; 2OQX; 2V0Y; 2V1P; 2VLF; 2VLH; 2YCN; 2YCP; 2YCT; 2YHK; 4UP2; 4W1Y; 5D8G
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission